1G6TA

Structure of epsp synthase liganded with shikimate-3-phosphate
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
427
structure length
427
Chain Sequence
MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords EPSP SYNTHASE
publication title Interaction of the herbicide glyphosate with its target enzyme 5-enolpyruvylshikimate 3-phosphate synthase in atomic detail.
pubmed doi rcsb
source organism Escherichia coli
total genus 158
structure length 427
sequence length 427
ec nomenclature ec 2.5.1.19: 3-phosphoshikimate 1-carboxyvinyltransferase.
pdb deposition date 2000-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 1g6tA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 1g6tA01
1MI4A 1YBGA 2RL1A 3SWAA 2O0BA 3SG1A 2BJBA 2Z2CA 3V5VA 2O0XA 3NVSA 3VCYA 2YVWA 3SWIA 4FQDA 3TI2A 4N3PA 1RYWA 2QFQA 2PQ9A 2PQBA 3RMTA 3SWEA 3TR1A 3R38A 5BUFA 3SWGA 3KR6A 2O0ZA 3SWQA 1X8RA 2AA9A 3ROIA 2GGDA 1EJCA 4E7BA 3ZH3A 3SLHA 5BS5A 3V4TA 2PQCA 3SWDA 4E7GA 1Q3GA 2RL2A 1EJDA 1UAEA 3FK0A 2GG6A 4GFPA 3LTHA 1P89A 2QFUA 3ZH4A 1RF4A 4E7FA 3SU9A 1RF5A 2QFSA 3KQAA 1RF6A 5U4HA 4EIIA 2GGAA 4ZNDA 3FJZA 4E7DA 3KQJA 4E7CA 2O0EA 5BQ2A 1P88A 2AAYA 2GG4A 2O15A 1G6TA 1Q36A 4E7EA 1G6SA 3SPBA 2PQDA 2QFTA 3FJXA 1NAWA 4EGRA 1A2NA 1X8TA 2O0DA 1DLGA 1EYNA 3ISSA 3FK1A 4R7UA 3UPKA
chains in the Genus database with same CATH superfamily
1MI4A 1YBGA 2RL1A 3SWAA 4CLQA 2O0BA 3TUTA 3SG1A 2BJBA 3KGDA 2Z2CA 3V5VA 1QMIA 2O0XA 3NVSA 3VCYA 2YVWA 3SWIA 4FQDA 3TI2A 4N3PA 1RYWA 2QFQA 2PQ9A 2PQBA 3RMTA 3TUXA 3SWEA 3TR1A 3R38A 5BUFA 3SWGA 3KR6A 2O0ZA 3SWQA 1X8RA 2AA9A 3ROIA 2GGDA 1EJCA 4E7BA 3ZH3A 3SLHA 5BS5A 3V4TA 2PQCA 3SWDA 4E7GA 1Q3GA 2RL2A 3TV1A 1EJDA 1UAEA 3FK0A 2GG6A 4GFPA 3LTHA 1P89A 3PQVA 2QFUA 3ZH4A 1RF4A 4E7FA 3TW3A 3SU9A 1RF5A 2QFSA 3KQAA 1RF6A 5U4HA 4EIIA 2GGAA 4ZNDA 3FJZA 4E7DA 3KQJA 4E7CA 2O0EA 5BQ2A 1P88A 2AAYA 2GG4A 4O89A 2O15A 1G6TA 1Q36A 4E7EA 1G6SA 3SPBA 2PQDA 4O8JA 2QFTA 3FJXA 1QMHA 1NAWA 4EGRA 1A2NA 1X8TA 2O0DA 1DLGA 1EYNA 3ISSA 3FK1A 4R7UA 3UPKA
chains in the Genus database with same CATH topology
1MI4A 1YBGA 2RL1A 3SWAA 2O0BA 3SG1A 2BJBA 2Z2CA 3V5VA 2O0XA 3NVSA 3VCYA 2YVWA 3SWIA 4FQDA 3TI2A 4N3PA 1RYWA 2QFQA 2PQ9A 2PQBA 3RMTA 3SWEA 3TR1A 3R38A 5BUFA 3SWGA 3KR6A 2O0ZA 3SWQA 1X8RA 2AA9A 3ROIA 2GGDA 1EJCA 4E7BA 3ZH3A 3SLHA 5BS5A 3V4TA 2PQCA 3SWDA 4E7GA 1Q3GA 2RL2A 1EJDA 1UAEA 3FK0A 2GG6A 4GFPA 3LTHA 1P89A 2QFUA 3ZH4A 1RF4A 4E7FA 3SU9A 1RF5A 2QFSA 3KQAA 1RF6A 5U4HA 4EIIA 2GGAA 4ZNDA 3FJZA 4E7DA 3KQJA 4E7CA 2O0EA 5BQ2A 1P88A 2AAYA 2GG4A 2O15A 1G6TA 1Q36A 4E7EA 1G6SA 3SPBA 2PQDA 2QFTA 3FJXA 1NAWA 4EGRA 1A2NA 1X8TA 2O0DA 1DLGA 1EYNA 3ISSA 3FK1A 4R7UA 3UPKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MI4 A;  1YBG A;  2RL1 A;  3SWA A;  2O0B A;  3SG1 A;  2BJB A;  2Z2C A;  3V5V A;  2O0X A;  3NVS A;  3VCY A;  2YVW A;  3SWI A;  4FQD A;  3TI2 A;  4N3P A;  1RYW A;  2QFQ A;  2PQ9 A;  2PQB A;  3RMT A;  3SWE A;  3TR1 A;  3R38 A;  5BUF A;  3SWG A;  3KR6 A;  2O0Z A;  3SWQ A;  1X8R A;  2AA9 A;  3ROI A;  2GGD A;  1EJC A;  4E7B A;  3ZH3 A;  3SLH A;  5BS5 A;  3V4T A;  2PQC A;  3SWD A;  4E7G A;  1Q3G A;  2RL2 A;  1EJD A;  1UAE A;  3FK0 A;  2GG6 A;  4GFP A;  3LTH A;  1P89 A;  2QFU A;  3ZH4 A;  1RF4 A;  4E7F A;  3SU9 A;  1RF5 A;  2QFS A;  3KQA A;  1RF6 A;  5U4H A;  4EII A;  2GGA A;  4ZND A;  3FJZ A;  4E7D A;  3KQJ A;  4E7C A;  2O0E A;  5BQ2 A;  1P88 A;  2AAY A;  2GG4 A;  2O15 A;  1G6T A;  1Q36 A;  4E7E A;  1G6S A;  3SPB A;  2PQD A;  2QFT A;  3FJX A;  1NAW A;  4EGR A;  1A2N A;  1X8T A;  2O0D A;  1DLG A;  1EYN A;  3ISS A;  3FK1 A;  4R7U A;  3UPK A; 
#chains in the Genus database with same CATH topology
 1MI4 A;  1YBG A;  2RL1 A;  3SWA A;  4CLQ A;  2O0B A;  3TUT A;  3SG1 A;  2BJB A;  3KGD A;  2Z2C A;  3V5V A;  1QMI A;  2O0X A;  3NVS A;  3VCY A;  2YVW A;  3SWI A;  4FQD A;  3TI2 A;  4N3P A;  1RYW A;  2QFQ A;  2PQ9 A;  2PQB A;  3RMT A;  3TUX A;  3SWE A;  3TR1 A;  3R38 A;  5BUF A;  3SWG A;  3KR6 A;  2O0Z A;  3SWQ A;  1X8R A;  2AA9 A;  3ROI A;  2GGD A;  1EJC A;  4E7B A;  3ZH3 A;  3SLH A;  5BS5 A;  3V4T A;  2PQC A;  3SWD A;  4E7G A;  1Q3G A;  2RL2 A;  3TV1 A;  1EJD A;  1UAE A;  3FK0 A;  2GG6 A;  4GFP A;  3LTH A;  1P89 A;  3PQV A;  2QFU A;  3ZH4 A;  1RF4 A;  4E7F A;  3TW3 A;  3SU9 A;  1RF5 A;  2QFS A;  3KQA A;  1RF6 A;  5U4H A;  4EII A;  2GGA A;  4ZND A;  3FJZ A;  4E7D A;  3KQJ A;  4E7C A;  2O0E A;  5BQ2 A;  1P88 A;  2AAY A;  2GG4 A;  4O89 A;  2O15 A;  1G6T A;  1Q36 A;  4E7E A;  1G6S A;  3SPB A;  2PQD A;  4O8J A;  2QFT A;  3FJX A;  1QMH A;  1NAW A;  4EGR A;  1A2N A;  1X8T A;  2O0D A;  1DLG A;  1EYN A;  3ISS A;  3FK1 A;  4R7U A;  3UPK A; 
#chains in the Genus database with same CATH homology
 1MI4 A;  1YBG A;  2RL1 A;  3SWA A;  2O0B A;  3SG1 A;  2BJB A;  2Z2C A;  3V5V A;  2O0X A;  3NVS A;  3VCY A;  2YVW A;  3SWI A;  4FQD A;  3TI2 A;  4N3P A;  1RYW A;  2QFQ A;  2PQ9 A;  2PQB A;  3RMT A;  3SWE A;  3TR1 A;  3R38 A;  5BUF A;  3SWG A;  3KR6 A;  2O0Z A;  3SWQ A;  1X8R A;  2AA9 A;  3ROI A;  2GGD A;  1EJC A;  4E7B A;  3ZH3 A;  3SLH A;  5BS5 A;  3V4T A;  2PQC A;  3SWD A;  4E7G A;  1Q3G A;  2RL2 A;  1EJD A;  1UAE A;  3FK0 A;  2GG6 A;  4GFP A;  3LTH A;  1P89 A;  2QFU A;  3ZH4 A;  1RF4 A;  4E7F A;  3SU9 A;  1RF5 A;  2QFS A;  3KQA A;  1RF6 A;  5U4H A;  4EII A;  2GGA A;  4ZND A;  3FJZ A;  4E7D A;  3KQJ A;  4E7C A;  2O0E A;  5BQ2 A;  1P88 A;  2AAY A;  2GG4 A;  2O15 A;  1G6T A;  1Q36 A;  4E7E A;  1G6S A;  3SPB A;  2PQD A;  2QFT A;  3FJX A;  1NAW A;  4EGR A;  1A2N A;  1X8T A;  2O0D A;  1DLG A;  1EYN A;  3ISS A;  3FK1 A;  4R7U A;  3UPK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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