1G77A

X-ray structure of escherichia coli pyridoxine 5`-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 a resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
199
structure length
199
Chain Sequence
GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords PYRIDOXINE 5`-PHOSPHATE OXIDASE
publication title X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution.
pubmed doi rcsb
source organism Escherichia coli
total genus 50
structure length 199
sequence length 199
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2000-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1g77A00
1WV4A 5CHEC 1G77A 2OU5A 2QEAA 1DNLA 1G79A 1T9MA 1YLNA 2HHZA 3TGVA 2D38A 4HMSA 3U0IA 2ED4A 1JNWA 1EJEA 2ASFA 3R5PA 4HMWA 2ARZA 4QVBA 3R5ZA 1USFA 2X1JA 2I51A 4XJ2A 3BA3A 1CI0A 3ZOCA 2QCKA 3BNKA 4HMXA 3FGEA 3VY2A 1AXJA 3ZOEA 2R0XA 3U35A 5JABA 3AMFA 3A20A 3GASA 3IN6A 2I02A 3E4VA 1W3PA 3DNHA 1W3QA 1RZ0A 4HMVA 3KYFA 1I0RA 3AWHA 3R5YA 2R6VA 2ECRA 1W9AA 5CHOA 1WLIA 3ZOFA 1XXOA 3KYGA 1G78A 2E83A 2HQ9A 2AQ6A 2D36A 3VYAA 3ZOGA 3K86A 1WLKA 2ECUA 2OL5A 1I0SA 1WGBA 2IG6A 2GJGA 1G76A 2D5MA 1TY9A 4YWNA 1Y30A 1YOAA 4L82A 3CP3A 3U34A 2HTDA 3F7EA 2RDEA 2FHQA 3R5WA 3K87A 1FLMA 4F07A 1RFEA 3A6RA 1RZ1A 3HMZA 1USCA 4HMUA 1W3OA 2HTIA 3SWJA 4HX6A 4HMTA 4IRAA 4Z85A 3ZODA 3HY8A 3PFTA 2HQ7A 1W3RA 3FKHA 2FG9A 2X1KA 2NR4A 2RE7A 2A2JA 3DMBA 1NRGA 3NFWA 3R5RA 3ZOHA 4R82A 3U5WA 2IMLA 3B5MA 2FURA 3A6QA 4XHYA 1VL7A 1XHNA 4Y9IA 2PTFA 2IABA 3RH7A 3DB0A 4ZKYA 3VY5A 2Q9KA 3R5LA 4YBNA 4N7RC 2D37A 3EC6A 3H96A 3CB0A 2VPAA 3BPKA 5ESCA 5BNCA 3K88A
chains in the Genus database with same CATH superfamily
1WV4A 5CHEC 3V4HA 1G77A 2OU5A 2QEAA 1DNLA 1G79A 5BNCA 1T9MA 1YLNA 2HHZA 3TGVA 2D38A 4HMSA 3U0IA 2ED4A 4W64A 1JNWA 1EJEA 2ASFA 3R5PA 4HMWA 2ARZA 4QVBA 3R5ZA 1USFA 2X1JA 2I51A 4XJ2A 3BA3A 1CI0A 3ZOCA 2QCKA 3BNKA 4HMXA 3FGEA 3VY2A 1AXJA 3ZOEA 2R0XA 3U35A 5JABA 3AMFA 3A20A 3GASA 3IN6A 2I02A 3E4VA 1W3PA 3DNHA 1W3QA 1RZ0A 4HMVA 3KYFA 1I0RA 3AWHA 3R5YA 2R6VA 2ECRA 1W9AA 5CHOA 1WLIA 3ZOFA 1XXOA 3KYGA 1G78A 2E83A 2HQ9A 2AQ6A 2D36A 3VYAA 3ZOGA 3K86A 1WLKA 2ECUA 2OL5A 1I0SA 1WGBA 2IG6A 2GJGA 4TV4A 1G76A 2D5MA 1TY9A 4YWNA 1Y30A 1YOAA 4L82A 3CP3A 3U34A 2HTDA 3F7EA 2RDEA 2FHQA 2L1TA 3R5WA 3K87A 1FLMA 4F07A 1RFEA 3A6RA 2K4QA 1RZ1A 3HMZA 1USCA 4HMUA 1Y12A 1W3OA 2HTIA 3SWJA 4HX6A 4HMTA 4IRAA 4Z85A 3ZODA 3HY8A 3PFTA 2HQ7A 1W3RA 3FKHA 2FG9A 2X1KA 2NR4A 2RE7A 2A2JA 3DMBA 1NRGA 3NFWA 3R5RA 4UHVA 3ZOHA 4R82A 3U5WA 2IMLA 3B5MA 2FURA 3A6QA 4XHYA 3EAAA 1VL7A 2P5ZX 1XHNA 4Y9IA 2PTFA 2GUJA 2IABA 3RH7A 3DB0A 4ZKYA 3VY5A 2Q9KA 3R5LA 4YBNA 4N7RC 2D37A 3EC6A 3HE1A 3H96A 3CB0A 2VPAA 3BPKA 5ESCA 4MTKA 3K88A 4HKHA
chains in the Genus database with same CATH topology
1WV4A 5CHEC 1G77A 2OU5A 2QEAA 1DNLA 1G79A 1T9MA 1YLNA 2HHZA 3TGVA 2D38A 4HMSA 3U0IA 2ED4A 1JNWA 1EJEA 2ASFA 3R5PA 4HMWA 2ARZA 4QVBA 3R5ZA 1USFA 2X1JA 2I51A 4XJ2A 3BA3A 1CI0A 3ZOCA 2QCKA 3BNKA 4HMXA 3FGEA 3VY2A 1AXJA 3ZOEA 2R0XA 3U35A 5JABA 3AMFA 3A20A 3GASA 3IN6A 2I02A 3E4VA 1W3PA 3DNHA 1W3QA 1RZ0A 4HMVA 3KYFA 1I0RA 3AWHA 3R5YA 2R6VA 2ECRA 1W9AA 5CHOA 1WLIA 3ZOFA 1XXOA 3KYGA 1G78A 2E83A 2HQ9A 2AQ6A 2D36A 3VYAA 3ZOGA 3K86A 1WLKA 2ECUA 2OL5A 1I0SA 1WGBA 2IG6A 2GJGA 1G76A 2D5MA 1TY9A 4YWNA 1Y30A 1YOAA 4L82A 3CP3A 3U34A 2HTDA 3F7EA 2RDEA 2FHQA 3R5WA 3K87A 1FLMA 4F07A 1RFEA 3A6RA 1RZ1A 3HMZA 1USCA 4HMUA 1W3OA 2HTIA 3SWJA 4HX6A 4HMTA 4IRAA 4Z85A 3ZODA 3HY8A 3PFTA 2HQ7A 1W3RA 3FKHA 2FG9A 2X1KA 2NR4A 2RE7A 2A2JA 3DMBA 1NRGA 3NFWA 3R5RA 3ZOHA 4R82A 3U5WA 2IMLA 3B5MA 2FURA 3A6QA 4XHYA 1VL7A 1XHNA 4Y9IA 2PTFA 2IABA 3RH7A 3DB0A 4ZKYA 3VY5A 2Q9KA 3R5LA 4YBNA 4N7RC 2D37A 3EC6A 3H96A 3CB0A 2VPAA 3BPKA 5ESCA 5BNCA 3K88A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WV4 A;  5CHE C;  1G77 A;  2OU5 A;  2QEA A;  1DNL A;  1G79 A;  1T9M A;  1YLN A;  2HHZ A;  3TGV A;  2D38 A;  4HMS A;  3U0I A;  2ED4 A;  1JNW A;  1EJE A;  2ASF A;  3R5P A;  4HMW A;  2ARZ A;  4QVB A;  3R5Z A;  1USF A;  2X1J A;  2I51 A;  4XJ2 A;  3BA3 A;  1CI0 A;  3ZOC A;  2QCK A;  3BNK A;  4HMX A;  3FGE A;  3VY2 A;  1AXJ A;  3ZOE A;  2R0X A;  3U35 A;  5JAB A;  3AMF A;  3A20 A;  3GAS A;  3IN6 A;  2I02 A;  3E4V A;  1W3P A;  3DNH A;  1W3Q A;  1RZ0 A;  4HMV A;  3KYF A;  1I0R A;  3AWH A;  3R5Y A;  2R6V A;  2ECR A;  1W9A A;  5CHO A;  1WLI A;  3ZOF A;  1XXO A;  3KYG A;  1G78 A;  2E83 A;  2HQ9 A;  2AQ6 A;  2D36 A;  3VYA A;  3ZOG A;  3K86 A;  1WLK A;  2ECU A;  2OL5 A;  1I0S A;  1WGB A;  2IG6 A;  2GJG A;  1G76 A;  2D5M A;  1TY9 A;  4YWN A;  1Y30 A;  1YOA A;  4L82 A;  3CP3 A;  3U34 A;  2HTD A;  3F7E A;  2RDE A;  2FHQ A;  3R5W A;  3K87 A;  1FLM A;  4F07 A;  1RFE A;  3A6R A;  1RZ1 A;  3HMZ A;  1USC A;  4HMU A;  1W3O A;  2HTI A;  3SWJ A;  4HX6 A;  4HMT A;  4IRA A;  4Z85 A;  3ZOD A;  3HY8 A;  3PFT A;  2HQ7 A;  1W3R A;  3FKH A;  2FG9 A;  2X1K A;  2NR4 A;  2RE7 A;  2A2J A;  3DMB A;  1NRG A;  3NFW A;  3R5R A;  3ZOH A;  4R82 A;  3U5W A;  2IML A;  3B5M A;  2FUR A;  3A6Q A;  4XHY A;  1VL7 A;  1XHN A;  4Y9I A;  2PTF A;  2IAB A;  3RH7 A;  3DB0 A;  4ZKY A;  3VY5 A;  2Q9K A;  3R5L A;  4YBN A;  4N7R C;  2D37 A;  3EC6 A;  3H96 A;  3CB0 A;  2VPA A;  3BPK A;  5ESC A;  5BNC A;  3K88 A; 
#chains in the Genus database with same CATH topology
 1WV4 A;  5CHE C;  3V4H A;  1G77 A;  2OU5 A;  2QEA A;  1DNL A;  1G79 A;  5BNC A;  1T9M A;  1YLN A;  2HHZ A;  3TGV A;  2D38 A;  4HMS A;  3U0I A;  2ED4 A;  4W64 A;  1JNW A;  1EJE A;  2ASF A;  3R5P A;  4HMW A;  2ARZ A;  4QVB A;  3R5Z A;  1USF A;  2X1J A;  2I51 A;  4XJ2 A;  3BA3 A;  1CI0 A;  3ZOC A;  2QCK A;  3BNK A;  4HMX A;  3FGE A;  3VY2 A;  1AXJ A;  3ZOE A;  2R0X A;  3U35 A;  5JAB A;  3AMF A;  3A20 A;  3GAS A;  3IN6 A;  2I02 A;  3E4V A;  1W3P A;  3DNH A;  1W3Q A;  1RZ0 A;  4HMV A;  3KYF A;  1I0R A;  3AWH A;  3R5Y A;  2R6V A;  2ECR A;  1W9A A;  5CHO A;  1WLI A;  3ZOF A;  1XXO A;  3KYG A;  1G78 A;  2E83 A;  2HQ9 A;  2AQ6 A;  2D36 A;  3VYA A;  3ZOG A;  3K86 A;  1WLK A;  2ECU A;  2OL5 A;  1I0S A;  1WGB A;  2IG6 A;  2GJG A;  4TV4 A;  1G76 A;  2D5M A;  1TY9 A;  4YWN A;  1Y30 A;  1YOA A;  4L82 A;  3CP3 A;  3U34 A;  2HTD A;  3F7E A;  2RDE A;  2FHQ A;  2L1T A;  3R5W A;  3K87 A;  1FLM A;  4F07 A;  1RFE A;  3A6R A;  2K4Q A;  1RZ1 A;  3HMZ A;  1USC A;  4HMU A;  1Y12 A;  1W3O A;  2HTI A;  3SWJ A;  4HX6 A;  4HMT A;  4IRA A;  4Z85 A;  3ZOD A;  3HY8 A;  3PFT A;  2HQ7 A;  1W3R A;  3FKH A;  2FG9 A;  2X1K A;  2NR4 A;  2RE7 A;  2A2J A;  3DMB A;  1NRG A;  3NFW A;  3R5R A;  4UHV A;  3ZOH A;  4R82 A;  3U5W A;  2IML A;  3B5M A;  2FUR A;  3A6Q A;  4XHY A;  3EAA A;  1VL7 A;  2P5Z X;  1XHN A;  4Y9I A;  2PTF A;  2GUJ A;  2IAB A;  3RH7 A;  3DB0 A;  4ZKY A;  3VY5 A;  2Q9K A;  3R5L A;  4YBN A;  4N7R C;  2D37 A;  3EC6 A;  3HE1 A;  3H96 A;  3CB0 A;  2VPA A;  3BPK A;  5ESC A;  4MTK A;  3K88 A;  4HKH A; 
#chains in the Genus database with same CATH homology
 1WV4 A;  5CHE C;  1G77 A;  2OU5 A;  2QEA A;  1DNL A;  1G79 A;  1T9M A;  1YLN A;  2HHZ A;  3TGV A;  2D38 A;  4HMS A;  3U0I A;  2ED4 A;  1JNW A;  1EJE A;  2ASF A;  3R5P A;  4HMW A;  2ARZ A;  4QVB A;  3R5Z A;  1USF A;  2X1J A;  2I51 A;  4XJ2 A;  3BA3 A;  1CI0 A;  3ZOC A;  2QCK A;  3BNK A;  4HMX A;  3FGE A;  3VY2 A;  1AXJ A;  3ZOE A;  2R0X A;  3U35 A;  5JAB A;  3AMF A;  3A20 A;  3GAS A;  3IN6 A;  2I02 A;  3E4V A;  1W3P A;  3DNH A;  1W3Q A;  1RZ0 A;  4HMV A;  3KYF A;  1I0R A;  3AWH A;  3R5Y A;  2R6V A;  2ECR A;  1W9A A;  5CHO A;  1WLI A;  3ZOF A;  1XXO A;  3KYG A;  1G78 A;  2E83 A;  2HQ9 A;  2AQ6 A;  2D36 A;  3VYA A;  3ZOG A;  3K86 A;  1WLK A;  2ECU A;  2OL5 A;  1I0S A;  1WGB A;  2IG6 A;  2GJG A;  1G76 A;  2D5M A;  1TY9 A;  4YWN A;  1Y30 A;  1YOA A;  4L82 A;  3CP3 A;  3U34 A;  2HTD A;  3F7E A;  2RDE A;  2FHQ A;  3R5W A;  3K87 A;  1FLM A;  4F07 A;  1RFE A;  3A6R A;  1RZ1 A;  3HMZ A;  1USC A;  4HMU A;  1W3O A;  2HTI A;  3SWJ A;  4HX6 A;  4HMT A;  4IRA A;  4Z85 A;  3ZOD A;  3HY8 A;  3PFT A;  2HQ7 A;  1W3R A;  3FKH A;  2FG9 A;  2X1K A;  2NR4 A;  2RE7 A;  2A2J A;  3DMB A;  1NRG A;  3NFW A;  3R5R A;  3ZOH A;  4R82 A;  3U5W A;  2IML A;  3B5M A;  2FUR A;  3A6Q A;  4XHY A;  1VL7 A;  1XHN A;  4Y9I A;  2PTF A;  2IAB A;  3RH7 A;  3DB0 A;  4ZKY A;  3VY5 A;  2Q9K A;  3R5L A;  4YBN A;  4N7R C;  2D37 A;  3EC6 A;  3H96 A;  3CB0 A;  2VPA A;  3BPK A;  5ESC A;  5BNC A;  3K88 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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