1G77A

X-ray structure of escherichia coli pyridoxine 5`-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 a resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
199
structure length
199
Chain Sequence
GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords PYRIDOXINE 5`-PHOSPHATE OXIDASE
total genus 50
structure length 199
sequence length 199
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2000-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1g77A00
2QCKA 3A20A 3IN6A 3FGEA 2FHQA 2D38A 3ZOGA 3B5MA 2ED4A 1WLKA 1Y30A 2NR4A 4HMWA 3U34A 1W3QA 3NFWA 3R5YA 3VY5A 3ZOHA 2ECRA 2HTIA 3R5LA 1WGBA 1AXJA 2D37A 4QVBA 5CHEC 3KYFA 1USCA 2RE7A 3E4VA 3TGVA 3CB0A 4L82A 2VPAA 3U35A 3GASA 4HMTA 3FKHA 1RZ1A 1VL7A 1G76A 4HMVA 3K87A 4IRAA 2I51A 4HMUA 1W3PA 1G79A 3AWHA 1WV4A 4XHYA 1EJEA 1T9MA 4YWNA 3K86A 2E83A 2HQ9A 4YBNA 3EC6A 3VYAA 2I02A 1I0SA 2OL5A 3HMZA 4HMXA 3ZOFA 2D5MA 1G77A 3KYGA 1RZ0A 2PTFA 4N7RC 1USFA 2HQ7A 2OU5A 2ASFA 1NRGA 1YOAA 2FG9A 3SWJA 3A6RA 1XHNA 2D36A 1XXOA 2R6VA 3R5RA 3DB0A 1W9AA 3ZOCA 1WLIA 2X1KA 2HTDA 4HX6A 2GJGA 2A2JA 3R5PA 3DMBA 3VY2A 2R0XA 2HHZA 2ECUA 1CI0A 2X1JA 4R82A 2Q9KA 3A6QA 3AMFA 1RFEA 1JNWA 3F7EA 2IMLA 1W3OA 3R5ZA 4Y9IA 3R5WA 4Z85A 5JABA 4XJ2A 3RH7A 5CHOA 1DNLA 4F07A 2ARZA 5BNCA 3CP3A 1W3RA 3HY8A 1FLMA 3BNKA 3U5WA 3BA3A 3BPKA 2IABA 1TY9A 2RDEA 2AQ6A 3K88A 4HMSA 1I0RA 4ZKYA 3H96A 2IG6A 2FURA 5ESCA 3U0IA 3ZODA 3DNHA 1YLNA 3ZOEA 2QEAA 1G78A 3PFTA
chains in the Genus database with same CATH superfamily
2QCKA 3A20A 3IN6A 3FGEA 2FHQA 2D38A 3ZOGA 3B5MA 2ED4A 1WLKA 1Y30A 3V4HA 2NR4A 4HMWA 3U34A 1W3QA 3NFWA 3R5YA 3VY5A 3ZOHA 2ECRA 4HKHA 2HTIA 3R5LA 1WGBA 1AXJA 2D37A 4MTKA 4QVBA 5CHEC 3KYFA 1USCA 2RE7A 1Y12A 3E4VA 3TGVA 3CB0A 4L82A 2VPAA 3U35A 3GASA 2P5ZX 4HMTA 3FKHA 1RZ1A 1VL7A 1G76A 4HMVA 3K87A 4IRAA 2I51A 4HMUA 1W3PA 1G79A 3AWHA 1WV4A 4XHYA 1EJEA 1T9MA 4YWNA 3K86A 2E83A 2HQ9A 4YBNA 3EC6A 4W64A 3VYAA 2I02A 1I0SA 2OL5A 3HMZA 4HMXA 3ZOFA 2D5MA 1G77A 3KYGA 1RZ0A 2K4QA 2PTFA 3HE1A 4N7RC 1USFA 2HQ7A 2OU5A 2ASFA 1NRGA 1YOAA 2FG9A 3SWJA 3A6RA 1XHNA 2D36A 1XXOA 2R6VA 3R5RA 3DB0A 1W9AA 3ZOCA 1WLIA 2X1KA 2HTDA 4HX6A 2GJGA 2A2JA 3R5PA 3DMBA 3VY2A 2R0XA 2HHZA 2ECUA 1CI0A 2X1JA 4R82A 2Q9KA 3A6QA 3AMFA 1RFEA 2L1TA 1JNWA 3F7EA 2IMLA 1W3OA 4UHVA 3R5ZA 4Y9IA 3R5WA 4Z85A 5JABA 4XJ2A 3RH7A 5CHOA 1DNLA 4F07A 2ARZA 5BNCA 3CP3A 1W3RA 3HY8A 1FLMA 3BNKA 3U5WA 3BA3A 3BPKA 2IABA 1TY9A 2RDEA 2AQ6A 3K88A 2GUJA 4HMSA 1I0RA 4ZKYA 3H96A 2IG6A 3EAAA 2FURA 5ESCA 4TV4A 3ZODA 3U0IA 3DNHA 1YLNA 3ZOEA 2QEAA 1G78A 3PFTA
chains in the Genus database with same CATH topology
2QCKA 3A20A 3IN6A 3FGEA 2FHQA 2D38A 3ZOGA 3B5MA 2ED4A 1WLKA 1Y30A 2NR4A 4HMWA 3U34A 1W3QA 3NFWA 3R5YA 3VY5A 3ZOHA 2ECRA 2HTIA 3R5LA 1WGBA 1AXJA 2D37A 4QVBA 5CHEC 3KYFA 1USCA 2RE7A 3E4VA 3TGVA 3CB0A 4L82A 2VPAA 3U35A 3GASA 4HMTA 3FKHA 1RZ1A 1VL7A 1G76A 4HMVA 3K87A 4IRAA 2I51A 4HMUA 1W3PA 1G79A 3AWHA 1WV4A 4XHYA 1EJEA 1T9MA 4YWNA 3K86A 2E83A 2HQ9A 4YBNA 3EC6A 3VYAA 2I02A 1I0SA 2OL5A 3HMZA 4HMXA 3ZOFA 2D5MA 1G77A 3KYGA 1RZ0A 2PTFA 4N7RC 1USFA 2HQ7A 2OU5A 2ASFA 1NRGA 1YOAA 2FG9A 3SWJA 3A6RA 1XHNA 2D36A 1XXOA 2R6VA 3R5RA 3DB0A 1W9AA 3ZOCA 1WLIA 2X1KA 2HTDA 4HX6A 2GJGA 2A2JA 3R5PA 3DMBA 3VY2A 2R0XA 2HHZA 2ECUA 1CI0A 2X1JA 4R82A 2Q9KA 3A6QA 3AMFA 1RFEA 1JNWA 3F7EA 2IMLA 1W3OA 3R5ZA 4Y9IA 3R5WA 4Z85A 5JABA 4XJ2A 3RH7A 5CHOA 1DNLA 4F07A 2ARZA 5BNCA 3CP3A 1W3RA 3HY8A 1FLMA 3BNKA 3U5WA 3BA3A 3BPKA 2IABA 1TY9A 2RDEA 2AQ6A 3K88A 4HMSA 1I0RA 4ZKYA 3H96A 2IG6A 2FURA 5ESCA 3U0IA 3ZODA 3DNHA 1YLNA 3ZOEA 2QEAA 1G78A 3PFTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QCK A;  3A20 A;  3IN6 A;  3FGE A;  2FHQ A;  2D38 A;  3ZOG A;  3B5M A;  2ED4 A;  1WLK A;  1Y30 A;  2NR4 A;  4HMW A;  3U34 A;  1W3Q A;  3NFW A;  3R5Y A;  3VY5 A;  3ZOH A;  2ECR A;  2HTI A;  3R5L A;  1WGB A;  1AXJ A;  2D37 A;  4QVB A;  5CHE C;  3KYF A;  1USC A;  2RE7 A;  3E4V A;  3TGV A;  3CB0 A;  4L82 A;  2VPA A;  3U35 A;  3GAS A;  4HMT A;  3FKH A;  1RZ1 A;  1VL7 A;  1G76 A;  4HMV A;  3K87 A;  4IRA A;  2I51 A;  4HMU A;  1W3P A;  1G79 A;  3AWH A;  1WV4 A;  4XHY A;  1EJE A;  1T9M A;  4YWN A;  3K86 A;  2E83 A;  2HQ9 A;  4YBN A;  3EC6 A;  3VYA A;  2I02 A;  1I0S A;  2OL5 A;  3HMZ A;  4HMX A;  3ZOF A;  2D5M A;  1G77 A;  3KYG A;  1RZ0 A;  2PTF A;  4N7R C;  1USF A;  2HQ7 A;  2OU5 A;  2ASF A;  1NRG A;  1YOA A;  2FG9 A;  3SWJ A;  3A6R A;  1XHN A;  2D36 A;  1XXO A;  2R6V A;  3R5R A;  3DB0 A;  1W9A A;  3ZOC A;  1WLI A;  2X1K A;  2HTD A;  4HX6 A;  2GJG A;  2A2J A;  3R5P A;  3DMB A;  3VY2 A;  2R0X A;  2HHZ A;  2ECU A;  1CI0 A;  2X1J A;  4R82 A;  2Q9K A;  3A6Q A;  3AMF A;  1RFE A;  1JNW A;  3F7E A;  2IML A;  1W3O A;  3R5Z A;  4Y9I A;  3R5W A;  4Z85 A;  5JAB A;  4XJ2 A;  3RH7 A;  5CHO A;  1DNL A;  4F07 A;  2ARZ A;  5BNC A;  3CP3 A;  1W3R A;  3HY8 A;  1FLM A;  3BNK A;  3U5W A;  3BA3 A;  3BPK A;  2IAB A;  1TY9 A;  2RDE A;  2AQ6 A;  3K88 A;  4HMS A;  1I0R A;  4ZKY A;  3H96 A;  2IG6 A;  2FUR A;  5ESC A;  3U0I A;  3ZOD A;  3DNH A;  1YLN A;  3ZOE A;  2QEA A;  1G78 A;  3PFT A; 
#chains in the Genus database with same CATH topology
 2QCK A;  3A20 A;  3IN6 A;  3FGE A;  2FHQ A;  2D38 A;  3ZOG A;  3B5M A;  2ED4 A;  1WLK A;  1Y30 A;  3V4H A;  2NR4 A;  4HMW A;  3U34 A;  1W3Q A;  3NFW A;  3R5Y A;  3VY5 A;  3ZOH A;  2ECR A;  4HKH A;  2HTI A;  3R5L A;  1WGB A;  1AXJ A;  2D37 A;  4MTK A;  4QVB A;  5CHE C;  3KYF A;  1USC A;  2RE7 A;  1Y12 A;  3E4V A;  3TGV A;  3CB0 A;  4L82 A;  2VPA A;  3U35 A;  3GAS A;  2P5Z X;  4HMT A;  3FKH A;  1RZ1 A;  1VL7 A;  1G76 A;  4HMV A;  3K87 A;  4IRA A;  2I51 A;  4HMU A;  1W3P A;  1G79 A;  3AWH A;  1WV4 A;  4XHY A;  1EJE A;  1T9M A;  4YWN A;  3K86 A;  2E83 A;  2HQ9 A;  4YBN A;  3EC6 A;  4W64 A;  3VYA A;  2I02 A;  1I0S A;  2OL5 A;  3HMZ A;  4HMX A;  3ZOF A;  2D5M A;  1G77 A;  3KYG A;  1RZ0 A;  2K4Q A;  2PTF A;  3HE1 A;  4N7R C;  1USF A;  2HQ7 A;  2OU5 A;  2ASF A;  1NRG A;  1YOA A;  2FG9 A;  3SWJ A;  3A6R A;  1XHN A;  2D36 A;  1XXO A;  2R6V A;  3R5R A;  3DB0 A;  1W9A A;  3ZOC A;  1WLI A;  2X1K A;  2HTD A;  4HX6 A;  2GJG A;  2A2J A;  3R5P A;  3DMB A;  3VY2 A;  2R0X A;  2HHZ A;  2ECU A;  1CI0 A;  2X1J A;  4R82 A;  2Q9K A;  3A6Q A;  3AMF A;  1RFE A;  2L1T A;  1JNW A;  3F7E A;  2IML A;  1W3O A;  4UHV A;  3R5Z A;  4Y9I A;  3R5W A;  4Z85 A;  5JAB A;  4XJ2 A;  3RH7 A;  5CHO A;  1DNL A;  4F07 A;  2ARZ A;  5BNC A;  3CP3 A;  1W3R A;  3HY8 A;  1FLM A;  3BNK A;  3U5W A;  3BA3 A;  3BPK A;  2IAB A;  1TY9 A;  2RDE A;  2AQ6 A;  3K88 A;  2GUJ A;  4HMS A;  1I0R A;  4ZKY A;  3H96 A;  2IG6 A;  3EAA A;  2FUR A;  5ESC A;  4TV4 A;  3ZOD A;  3U0I A;  3DNH A;  1YLN A;  3ZOE A;  2QEA A;  1G78 A;  3PFT A; 
#chains in the Genus database with same CATH homology
 2QCK A;  3A20 A;  3IN6 A;  3FGE A;  2FHQ A;  2D38 A;  3ZOG A;  3B5M A;  2ED4 A;  1WLK A;  1Y30 A;  2NR4 A;  4HMW A;  3U34 A;  1W3Q A;  3NFW A;  3R5Y A;  3VY5 A;  3ZOH A;  2ECR A;  2HTI A;  3R5L A;  1WGB A;  1AXJ A;  2D37 A;  4QVB A;  5CHE C;  3KYF A;  1USC A;  2RE7 A;  3E4V A;  3TGV A;  3CB0 A;  4L82 A;  2VPA A;  3U35 A;  3GAS A;  4HMT A;  3FKH A;  1RZ1 A;  1VL7 A;  1G76 A;  4HMV A;  3K87 A;  4IRA A;  2I51 A;  4HMU A;  1W3P A;  1G79 A;  3AWH A;  1WV4 A;  4XHY A;  1EJE A;  1T9M A;  4YWN A;  3K86 A;  2E83 A;  2HQ9 A;  4YBN A;  3EC6 A;  3VYA A;  2I02 A;  1I0S A;  2OL5 A;  3HMZ A;  4HMX A;  3ZOF A;  2D5M A;  1G77 A;  3KYG A;  1RZ0 A;  2PTF A;  4N7R C;  1USF A;  2HQ7 A;  2OU5 A;  2ASF A;  1NRG A;  1YOA A;  2FG9 A;  3SWJ A;  3A6R A;  1XHN A;  2D36 A;  1XXO A;  2R6V A;  3R5R A;  3DB0 A;  1W9A A;  3ZOC A;  1WLI A;  2X1K A;  2HTD A;  4HX6 A;  2GJG A;  2A2J A;  3R5P A;  3DMB A;  3VY2 A;  2R0X A;  2HHZ A;  2ECU A;  1CI0 A;  2X1J A;  4R82 A;  2Q9K A;  3A6Q A;  3AMF A;  1RFE A;  1JNW A;  3F7E A;  2IML A;  1W3O A;  3R5Z A;  4Y9I A;  3R5W A;  4Z85 A;  5JAB A;  4XJ2 A;  3RH7 A;  5CHO A;  1DNL A;  4F07 A;  2ARZ A;  5BNC A;  3CP3 A;  1W3R A;  3HY8 A;  1FLM A;  3BNK A;  3U5W A;  3BA3 A;  3BPK A;  2IAB A;  1TY9 A;  2RDE A;  2AQ6 A;  3K88 A;  4HMS A;  1I0R A;  4ZKY A;  3H96 A;  2IG6 A;  2FUR A;  5ESC A;  3U0I A;  3ZOD A;  3DNH A;  1YLN A;  3ZOE A;  2QEA A;  1G78 A;  3PFT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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