1G79A

X-ray structure of escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
199
structure length
199
Chain Sequence
GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords PYRIDOXINE 5'-PHOSPHATE OXIDASE
publication title X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution.
pubmed doi rcsb
source organism Escherichia coli
total genus 54
structure length 199
sequence length 199
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2000-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1g79A00
2HHZA 2R0XA 3E4VA 4HMXA 3VY5A 4YWNA 2QEAA 4QVBA 3CP3A 4XHYA 3AMFA 1YLNA 3R5LA 5CHOA 3DNHA 3KYGA 4ZKYA 1W3RA 4HX6A 1EJEA 3U35A 1NRGA 2AQ6A 2I51A 2GJGA 2OL5A 4HMUA 3BA3A 3ZOFA 2OU5A 2FHQA 5CHEC 4HMVA 4HMTA 2IABA 2RDEA 3PFTA 4R82A 3VYAA 1W9AA 3HY8A 1RFEA 3DB0A 3R5WA 1XXOA 3A6QA 2NR4A 2D37A 3K86A 4IRAA 3U5WA 3U0IA 2R6VA 1DNLA 2ARZA 5ESCA 3ZOEA 3B5MA 1T9MA 2RE7A 3BNKA 3R5ZA 2QCKA 3RH7A 3U34A 2ECRA 2IMLA 4HMSA 1W3OA 1G79A 1TY9A 3K88A 3IN6A 2HQ9A 1WV4A 1YOAA 3HMZA 2FURA 2ED4A 2IG6A 3H96A 2ASFA 4YBNA 1WGBA 2FG9A 2D38A 3CB0A 3F7EA 2VPAA 2HTDA 1RZ0A 2HTIA 4N7RC 1RZ1A 1G78A 3R5YA 1I0RA 4F07A 1W3QA 3A20A 3VY2A 3A6RA 1WLKA 4XJ2A 3R5RA 2E83A 3R5PA 5JABA 1USFA 3AWHA 3TGVA 3EC6A 3FGEA 3SWJA 2Q9KA 2D36A 3DMBA 3BPKA 1USCA 3GASA 3K87A 2I02A 4Z85A 2X1JA 2A2JA 1VL7A 1AXJA 3KYFA 5BNCA 1JNWA 1W3PA 1XHNA 1I0SA 2X1KA 3NFWA 3ZOHA 1G77A 1FLMA 1G76A 1Y30A 3ZOCA 4L82A 2HQ7A 2ECUA 2PTFA 4HMWA 3ZOGA 3FKHA 4Y9IA 2D5MA 1CI0A 1WLIA 3ZODA
chains in the Genus database with same CATH superfamily
2HHZA 2R0XA 3E4VA 4HMXA 3VY5A 4YWNA 2QEAA 4QVBA 3CP3A 4XHYA 3AMFA 1YLNA 3R5LA 5CHOA 3DNHA 3KYGA 4ZKYA 1W3RA 4HX6A 1EJEA 3U35A 1NRGA 2AQ6A 2I51A 3EAAA 2GJGA 2OL5A 4HMUA 3BA3A 3ZOFA 2OU5A 2FHQA 5CHEC 4HMVA 4HMTA 2IABA 2RDEA 3PFTA 3HE1A 4R82A 3VYAA 1W9AA 3HY8A 1RFEA 3DB0A 3R5WA 3V4HA 1XXOA 3A6QA 2NR4A 2L1TA 4MTKA 2D37A 3K86A 4IRAA 3U5WA 3U0IA 2R6VA 1DNLA 2ARZA 5ESCA 3ZOEA 3B5MA 1T9MA 2RE7A 3BNKA 3R5ZA 2QCKA 3RH7A 3U34A 2ECRA 2IMLA 4HMSA 1W3OA 1G79A 1TY9A 3K88A 4W64A 3IN6A 2HQ9A 1WV4A 2GUJA 1YOAA 3HMZA 2FURA 2ED4A 2IG6A 3H96A 2ASFA 4YBNA 1WGBA 2FG9A 2D38A 3CB0A 4UHVA 3F7EA 2VPAA 2HTDA 1RZ0A 2HTIA 4N7RC 1RZ1A 1G78A 3R5YA 1I0RA 4F07A 1W3QA 3A20A 3VY2A 3A6RA 1Y12A 1WLKA 4XJ2A 3R5RA 2E83A 3R5PA 5JABA 1USFA 3AWHA 3TGVA 3EC6A 3FGEA 3SWJA 2Q9KA 2D36A 3DMBA 3BPKA 1USCA 3GASA 3K87A 4HKHA 2I02A 4Z85A 2X1JA 2A2JA 1VL7A 1AXJA 3KYFA 5BNCA 1JNWA 1W3PA 1XHNA 1I0SA 2X1KA 3NFWA 3ZOHA 4TV4A 1G77A 1FLMA 1G76A 1Y30A 3ZOCA 4L82A 2HQ7A 2ECUA 2PTFA 4HMWA 3ZOGA 3FKHA 2K4QA 4Y9IA 2D5MA 1CI0A 1WLIA 2P5ZX 3ZODA
chains in the Genus database with same CATH topology
2HHZA 2R0XA 3E4VA 4HMXA 3VY5A 4YWNA 2QEAA 4QVBA 3CP3A 4XHYA 3AMFA 1YLNA 3R5LA 5CHOA 3DNHA 3KYGA 4ZKYA 1W3RA 4HX6A 1EJEA 3U35A 1NRGA 2AQ6A 2I51A 2GJGA 2OL5A 4HMUA 3BA3A 3ZOFA 2OU5A 2FHQA 5CHEC 4HMVA 4HMTA 2IABA 2RDEA 3PFTA 4R82A 3VYAA 1W9AA 3HY8A 1RFEA 3DB0A 3R5WA 1XXOA 3A6QA 2NR4A 2D37A 3K86A 4IRAA 3U5WA 3U0IA 2R6VA 1DNLA 2ARZA 5ESCA 3ZOEA 3B5MA 1T9MA 2RE7A 3BNKA 3R5ZA 2QCKA 3RH7A 3U34A 2ECRA 2IMLA 4HMSA 1W3OA 1G79A 1TY9A 3K88A 3IN6A 2HQ9A 1WV4A 1YOAA 3HMZA 2FURA 2ED4A 2IG6A 3H96A 2ASFA 4YBNA 1WGBA 2FG9A 2D38A 3CB0A 3F7EA 2VPAA 2HTDA 1RZ0A 2HTIA 4N7RC 1RZ1A 1G78A 3R5YA 1I0RA 4F07A 1W3QA 3A20A 3VY2A 3A6RA 1WLKA 4XJ2A 3R5RA 2E83A 3R5PA 5JABA 1USFA 3AWHA 3TGVA 3EC6A 3FGEA 3SWJA 2Q9KA 2D36A 3DMBA 3BPKA 1USCA 3GASA 3K87A 2I02A 4Z85A 2X1JA 2A2JA 1VL7A 1AXJA 3KYFA 5BNCA 1JNWA 1W3PA 1XHNA 1I0SA 2X1KA 3NFWA 3ZOHA 1G77A 1FLMA 1G76A 1Y30A 3ZOCA 4L82A 2HQ7A 2ECUA 2PTFA 4HMWA 3ZOGA 3FKHA 4Y9IA 2D5MA 1CI0A 1WLIA 3ZODA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HHZ A;  2R0X A;  3E4V A;  4HMX A;  3VY5 A;  4YWN A;  2QEA A;  4QVB A;  3CP3 A;  4XHY A;  3AMF A;  1YLN A;  3R5L A;  5CHO A;  3DNH A;  3KYG A;  4ZKY A;  1W3R A;  4HX6 A;  1EJE A;  3U35 A;  1NRG A;  2AQ6 A;  2I51 A;  2GJG A;  2OL5 A;  4HMU A;  3BA3 A;  3ZOF A;  2OU5 A;  2FHQ A;  5CHE C;  4HMV A;  4HMT A;  2IAB A;  2RDE A;  3PFT A;  4R82 A;  3VYA A;  1W9A A;  3HY8 A;  1RFE A;  3DB0 A;  3R5W A;  1XXO A;  3A6Q A;  2NR4 A;  2D37 A;  3K86 A;  4IRA A;  3U5W A;  3U0I A;  2R6V A;  1DNL A;  2ARZ A;  5ESC A;  3ZOE A;  3B5M A;  1T9M A;  2RE7 A;  3BNK A;  3R5Z A;  2QCK A;  3RH7 A;  3U34 A;  2ECR A;  2IML A;  4HMS A;  1W3O A;  1G79 A;  1TY9 A;  3K88 A;  3IN6 A;  2HQ9 A;  1WV4 A;  1YOA A;  3HMZ A;  2FUR A;  2ED4 A;  2IG6 A;  3H96 A;  2ASF A;  4YBN A;  1WGB A;  2FG9 A;  2D38 A;  3CB0 A;  3F7E A;  2VPA A;  2HTD A;  1RZ0 A;  2HTI A;  4N7R C;  1RZ1 A;  1G78 A;  3R5Y A;  1I0R A;  4F07 A;  1W3Q A;  3A20 A;  3VY2 A;  3A6R A;  1WLK A;  4XJ2 A;  3R5R A;  2E83 A;  3R5P A;  5JAB A;  1USF A;  3AWH A;  3TGV A;  3EC6 A;  3FGE A;  3SWJ A;  2Q9K A;  2D36 A;  3DMB A;  3BPK A;  1USC A;  3GAS A;  3K87 A;  2I02 A;  4Z85 A;  2X1J A;  2A2J A;  1VL7 A;  1AXJ A;  3KYF A;  5BNC A;  1JNW A;  1W3P A;  1XHN A;  1I0S A;  2X1K A;  3NFW A;  3ZOH A;  1G77 A;  1FLM A;  1G76 A;  1Y30 A;  3ZOC A;  4L82 A;  2HQ7 A;  2ECU A;  2PTF A;  4HMW A;  3ZOG A;  3FKH A;  4Y9I A;  2D5M A;  1CI0 A;  1WLI A;  3ZOD A; 
#chains in the Genus database with same CATH topology
 2HHZ A;  2R0X A;  3E4V A;  4HMX A;  3VY5 A;  4YWN A;  2QEA A;  4QVB A;  3CP3 A;  4XHY A;  3AMF A;  1YLN A;  3R5L A;  5CHO A;  3DNH A;  3KYG A;  4ZKY A;  1W3R A;  4HX6 A;  1EJE A;  3U35 A;  1NRG A;  2AQ6 A;  2I51 A;  3EAA A;  2GJG A;  2OL5 A;  4HMU A;  3BA3 A;  3ZOF A;  2OU5 A;  2FHQ A;  5CHE C;  4HMV A;  4HMT A;  2IAB A;  2RDE A;  3PFT A;  3HE1 A;  4R82 A;  3VYA A;  1W9A A;  3HY8 A;  1RFE A;  3DB0 A;  3R5W A;  3V4H A;  1XXO A;  3A6Q A;  2NR4 A;  2L1T A;  4MTK A;  2D37 A;  3K86 A;  4IRA A;  3U5W A;  3U0I A;  2R6V A;  1DNL A;  2ARZ A;  5ESC A;  3ZOE A;  3B5M A;  1T9M A;  2RE7 A;  3BNK A;  3R5Z A;  2QCK A;  3RH7 A;  3U34 A;  2ECR A;  2IML A;  4HMS A;  1W3O A;  1G79 A;  1TY9 A;  3K88 A;  4W64 A;  3IN6 A;  2HQ9 A;  1WV4 A;  2GUJ A;  1YOA A;  3HMZ A;  2FUR A;  2ED4 A;  2IG6 A;  3H96 A;  2ASF A;  4YBN A;  1WGB A;  2FG9 A;  2D38 A;  3CB0 A;  4UHV A;  3F7E A;  2VPA A;  2HTD A;  1RZ0 A;  2HTI A;  4N7R C;  1RZ1 A;  1G78 A;  3R5Y A;  1I0R A;  4F07 A;  1W3Q A;  3A20 A;  3VY2 A;  3A6R A;  1Y12 A;  1WLK A;  4XJ2 A;  3R5R A;  2E83 A;  3R5P A;  5JAB A;  1USF A;  3AWH A;  3TGV A;  3EC6 A;  3FGE A;  3SWJ A;  2Q9K A;  2D36 A;  3DMB A;  3BPK A;  1USC A;  3GAS A;  3K87 A;  4HKH A;  2I02 A;  4Z85 A;  2X1J A;  2A2J A;  1VL7 A;  1AXJ A;  3KYF A;  5BNC A;  1JNW A;  1W3P A;  1XHN A;  1I0S A;  2X1K A;  3NFW A;  3ZOH A;  4TV4 A;  1G77 A;  1FLM A;  1G76 A;  1Y30 A;  3ZOC A;  4L82 A;  2HQ7 A;  2ECU A;  2PTF A;  4HMW A;  3ZOG A;  3FKH A;  2K4Q A;  4Y9I A;  2D5M A;  1CI0 A;  1WLI A;  2P5Z X;  3ZOD A; 
#chains in the Genus database with same CATH homology
 2HHZ A;  2R0X A;  3E4V A;  4HMX A;  3VY5 A;  4YWN A;  2QEA A;  4QVB A;  3CP3 A;  4XHY A;  3AMF A;  1YLN A;  3R5L A;  5CHO A;  3DNH A;  3KYG A;  4ZKY A;  1W3R A;  4HX6 A;  1EJE A;  3U35 A;  1NRG A;  2AQ6 A;  2I51 A;  2GJG A;  2OL5 A;  4HMU A;  3BA3 A;  3ZOF A;  2OU5 A;  2FHQ A;  5CHE C;  4HMV A;  4HMT A;  2IAB A;  2RDE A;  3PFT A;  4R82 A;  3VYA A;  1W9A A;  3HY8 A;  1RFE A;  3DB0 A;  3R5W A;  1XXO A;  3A6Q A;  2NR4 A;  2D37 A;  3K86 A;  4IRA A;  3U5W A;  3U0I A;  2R6V A;  1DNL A;  2ARZ A;  5ESC A;  3ZOE A;  3B5M A;  1T9M A;  2RE7 A;  3BNK A;  3R5Z A;  2QCK A;  3RH7 A;  3U34 A;  2ECR A;  2IML A;  4HMS A;  1W3O A;  1G79 A;  1TY9 A;  3K88 A;  3IN6 A;  2HQ9 A;  1WV4 A;  1YOA A;  3HMZ A;  2FUR A;  2ED4 A;  2IG6 A;  3H96 A;  2ASF A;  4YBN A;  1WGB A;  2FG9 A;  2D38 A;  3CB0 A;  3F7E A;  2VPA A;  2HTD A;  1RZ0 A;  2HTI A;  4N7R C;  1RZ1 A;  1G78 A;  3R5Y A;  1I0R A;  4F07 A;  1W3Q A;  3A20 A;  3VY2 A;  3A6R A;  1WLK A;  4XJ2 A;  3R5R A;  2E83 A;  3R5P A;  5JAB A;  1USF A;  3AWH A;  3TGV A;  3EC6 A;  3FGE A;  3SWJ A;  2Q9K A;  2D36 A;  3DMB A;  3BPK A;  1USC A;  3GAS A;  3K87 A;  2I02 A;  4Z85 A;  2X1J A;  2A2J A;  1VL7 A;  1AXJ A;  3KYF A;  5BNC A;  1JNW A;  1W3P A;  1XHN A;  1I0S A;  2X1K A;  3NFW A;  3ZOH A;  1G77 A;  1FLM A;  1G76 A;  1Y30 A;  3ZOC A;  4L82 A;  2HQ7 A;  2ECU A;  2PTF A;  4HMW A;  3ZOG A;  3FKH A;  4Y9I A;  2D5M A;  1CI0 A;  1WLI A;  3ZOD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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