1G7DA

Nmr structure of erp29 c-domain
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
106
structure length
106
Chain Sequence
PGCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGEDFPASELARISKLIENKMSEGKKEELQRSLNILTAFRKKGAEKEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone
molecule keywords ENDOPLASMIC RETICULUM PROTEIN ERP29
publication title Thioredoxin fold as homodimerization module in the putative chaperone ERp29: NMR structures of the domains and experimental model of the 51 kDa dimer.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 41
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2000-11-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07749 ERp29 Endoplasmic reticulum protein ERp29, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1150.12 Mainly Alpha Up-down Bundle Endoplasmic reticulum protein erp29 Endoplasmic reticulum resident protein 29, C-terminal domain 1g7dA00
2M66A 2C0FA 2C0EA 2QC7A 2C1YA 1G7DA 1OVNA 2C0GA
chains in the Genus database with same CATH superfamily
2M66A 2C0FA 2C0EA 2QC7A 2C1YA 1G7DA 1OVNA 2C0GA
chains in the Genus database with same CATH topology
2M66A 2C0FA 2C0EA 2QC7A 2C1YA 1G7DA 1OVNA 2C0GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M66 A;  2C0F A;  2C0E A;  2QC7 A;  2C1Y A;  1G7D A;  1OVN A;  2C0G A; 
#chains in the Genus database with same CATH topology
 2M66 A;  2C0F A;  2C0E A;  2QC7 A;  2C1Y A;  1G7D A;  1OVN A;  2C0G A; 
#chains in the Genus database with same CATH homology
 2M66 A;  2C0F A;  2C0E A;  2QC7 A;  2C1Y A;  1G7D A;  1OVN A;  2C0G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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