1G9ZA

Laglidadg homing endonuclease i-crei / dna product complex with magnesium
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*A)-3'
publication title The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites.
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 47
structure length 152
sequence length 152
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2000-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1g9zA00
4AAFA 1T9JA 4AAGA 2I3QA 3HYIA 2CW8A 2O7MA 3MISA 5A72A 3C0XA 2CW7A 4AQUA 1DQ3A 1R7MA 5A77A 5AKFA 1EF0A 1MOWA 3MIPA 2VBLA 3QQYA 4UN7A 3OORA 5A0WA 1U0CA 2VBJA 1JVAA 2FLDA 2VS8A 3MXBA 4AADA 1G9ZA 3UVFA 4UN8A 2VBJB 1DFAA 1LWTA 5AK9A 3FD2A 4Z1XA 3HYJA 2EX5A 4AQXA 5A78A 4YHXA 5E5OA 1N3EA 5AKNA 4AAEA 2XE0A 4D6NA 2I3PA 1BP7A 5A0MA 1B24A 4UNCA 4AABA 4UNAA 1LWSA 2VBLB 4Z1ZA 1UM2A 2QOJZ 5A0MB 2VBNA 2VS7A 4Z20A 1M5XA 4UN9G 2VBOA 3MXBB 4EFJA 3MXAA 3KO2A 2DCHX 2VBNB 1G9YA 2AB5A 1VDEA 1N3FA 5E63A 4UNBA 3OOLA 3R7PA 1U0DA 4YITA 4UN7G 4UT0A 2XE0B 1T9IA 5A74A 5AKMA 4YISA 1P8KZ 4UN9A 4LOXA 3EH8A 5E5SA 3E54A 4UN8G 3C0WA 4D6OA 1AF5A 5E67A 3MX9A 4LQ0A 2VBOB
chains in the Genus database with same CATH superfamily
4AAFA 1T9JA 4AAGA 2I3QA 3HYIA 2CW8A 2O7MA 3MISA 5A72A 3C0XA 2CW7A 4AQUA 1DQ3A 1R7MA 5A77A 5AKFA 1EF0A 1MOWA 3MIPA 2VBLA 2F4LA 3QQYA 4UN7A 3OORA 5A0WA 1U0CA 2VBJA 1JVAA 2FLDA 2VS8A 3MXBA 4AADA 1G9ZA 3UVFA 4UN8A 2VBJB 1DFAA 1LWTA 5AK9A 3FD2A 4Z1XA 3HYJA 2EX5A 4AQXA 5A78A 4YHXA 5E5OA 1N3EA 5AKNA 4AAEA 2XE0A 4D6NA 2I3PA 1BP7A 5A0MA 1B24A 4UNCA 4AABA 4UNAA 1LWSA 2VBLB 4Z1ZA 1UM2A 2QOJZ 5A0MB 2VBNA 2VS7A 4Z20A 1M5XA 4UN9G 2VBOA 3MXBB 4EFJA 3MXAA 3KO2A 2DCHX 2VBNB 1G9YA 2AB5A 1VDEA 1N3FA 5E63A 4UNBA 3OOLA 3R7PA 4KZSA 1U0DA 4YITA 4UN7G 4UT0A 2XE0B 1T9IA 5A74A 5AKMA 4YISA 1P8KZ 4UN9A 4LOXA 3EH8A 5E5SA 3E54A 4UN8G 3C0WA 4D6OA 1AF5A 5E67A 3MX9A 4LQ0A 2VBOB
chains in the Genus database with same CATH topology
4AAFA 1T9JA 4AAGA 2I3QA 3HYIA 2CW8A 2O7MA 3MISA 5A72A 3C0XA 2CW7A 4AQUA 1DQ3A 1R7MA 5A77A 5AKFA 1EF0A 1MOWA 3MIPA 2VBLA 3QQYA 4UN7A 3OORA 5A0WA 1U0CA 2VBJA 1JVAA 2FLDA 2VS8A 3MXBA 4AADA 1G9ZA 3UVFA 4UN8A 2VBJB 1DFAA 1LWTA 5AK9A 3FD2A 4Z1XA 3HYJA 2EX5A 4AQXA 5A78A 4YHXA 5E5OA 1N3EA 5AKNA 4AAEA 2XE0A 4D6NA 2I3PA 1BP7A 5A0MA 1B24A 4UNCA 4AABA 4UNAA 1LWSA 2VBLB 4Z1ZA 1UM2A 2QOJZ 5A0MB 2VBNA 2VS7A 4Z20A 1M5XA 4UN9G 2VBOA 3MXBB 4EFJA 3MXAA 3KO2A 2DCHX 2VBNB 1G9YA 2AB5A 1VDEA 1N3FA 5E63A 4UNBA 3OOLA 3R7PA 1U0DA 4YITA 4UN7G 4UT0A 2XE0B 1T9IA 5A74A 5AKMA 4YISA 1P8KZ 4UN9A 4LOXA 3EH8A 5E5SA 3E54A 4UN8G 3C0WA 4D6OA 1AF5A 5E67A 3MX9A 4LQ0A 2VBOB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AAF A;  1T9J A;  4AAG A;  2I3Q A;  3HYI A;  2CW8 A;  2O7M A;  3MIS A;  5A72 A;  3C0X A;  2CW7 A;  4AQU A;  1DQ3 A;  1R7M A;  5A77 A;  5AKF A;  1EF0 A;  1MOW A;  3MIP A;  2VBL A;  3QQY A;  4UN7 A;  3OOR A;  5A0W A;  1U0C A;  2VBJ A;  1JVA A;  2FLD A;  2VS8 A;  3MXB A;  4AAD A;  1G9Z A;  3UVF A;  4UN8 A;  2VBJ B;  1DFA A;  1LWT A;  5AK9 A;  3FD2 A;  4Z1X A;  3HYJ A;  2EX5 A;  4AQX A;  5A78 A;  4YHX A;  5E5O A;  1N3E A;  5AKN A;  4AAE A;  2XE0 A;  4D6N A;  2I3P A;  1BP7 A;  5A0M A;  1B24 A;  4UNC A;  4AAB A;  4UNA A;  1LWS A;  2VBL B;  4Z1Z A;  1UM2 A;  2QOJ Z;  5A0M B;  2VBN A;  2VS7 A;  4Z20 A;  1M5X A;  4UN9 G;  2VBO A;  3MXB B;  4EFJ A;  3MXA A;  3KO2 A;  2DCH X;  2VBN B;  1G9Y A;  2AB5 A;  1VDE A;  1N3F A;  5E63 A;  4UNB A;  3OOL A;  3R7P A;  1U0D A;  4YIT A;  4UN7 G;  4UT0 A;  2XE0 B;  1T9I A;  5A74 A;  5AKM A;  4YIS A;  1P8K Z;  4UN9 A;  4LOX A;  3EH8 A;  5E5S A;  3E54 A;  4UN8 G;  3C0W A;  4D6O A;  1AF5 A;  5E67 A;  3MX9 A;  4LQ0 A;  2VBO B; 
#chains in the Genus database with same CATH topology
 4AAF A;  1T9J A;  4AAG A;  2I3Q A;  3HYI A;  2CW8 A;  2O7M A;  3MIS A;  5A72 A;  3C0X A;  2CW7 A;  4AQU A;  1DQ3 A;  1R7M A;  5A77 A;  5AKF A;  1EF0 A;  1MOW A;  3MIP A;  2VBL A;  2F4L A;  3QQY A;  4UN7 A;  3OOR A;  5A0W A;  1U0C A;  2VBJ A;  1JVA A;  2FLD A;  2VS8 A;  3MXB A;  4AAD A;  1G9Z A;  3UVF A;  4UN8 A;  2VBJ B;  1DFA A;  1LWT A;  5AK9 A;  3FD2 A;  4Z1X A;  3HYJ A;  2EX5 A;  4AQX A;  5A78 A;  4YHX A;  5E5O A;  1N3E A;  5AKN A;  4AAE A;  2XE0 A;  4D6N A;  2I3P A;  1BP7 A;  5A0M A;  1B24 A;  4UNC A;  4AAB A;  4UNA A;  1LWS A;  2VBL B;  4Z1Z A;  1UM2 A;  2QOJ Z;  5A0M B;  2VBN A;  2VS7 A;  4Z20 A;  1M5X A;  4UN9 G;  2VBO A;  3MXB B;  4EFJ A;  3MXA A;  3KO2 A;  2DCH X;  2VBN B;  1G9Y A;  2AB5 A;  1VDE A;  1N3F A;  5E63 A;  4UNB A;  3OOL A;  3R7P A;  4KZS A;  1U0D A;  4YIT A;  4UN7 G;  4UT0 A;  2XE0 B;  1T9I A;  5A74 A;  5AKM A;  4YIS A;  1P8K Z;  4UN9 A;  4LOX A;  3EH8 A;  5E5S A;  3E54 A;  4UN8 G;  3C0W A;  4D6O A;  1AF5 A;  5E67 A;  3MX9 A;  4LQ0 A;  2VBO B; 
#chains in the Genus database with same CATH homology
 4AAF A;  1T9J A;  4AAG A;  2I3Q A;  3HYI A;  2CW8 A;  2O7M A;  3MIS A;  5A72 A;  3C0X A;  2CW7 A;  4AQU A;  1DQ3 A;  1R7M A;  5A77 A;  5AKF A;  1EF0 A;  1MOW A;  3MIP A;  2VBL A;  3QQY A;  4UN7 A;  3OOR A;  5A0W A;  1U0C A;  2VBJ A;  1JVA A;  2FLD A;  2VS8 A;  3MXB A;  4AAD A;  1G9Z A;  3UVF A;  4UN8 A;  2VBJ B;  1DFA A;  1LWT A;  5AK9 A;  3FD2 A;  4Z1X A;  3HYJ A;  2EX5 A;  4AQX A;  5A78 A;  4YHX A;  5E5O A;  1N3E A;  5AKN A;  4AAE A;  2XE0 A;  4D6N A;  2I3P A;  1BP7 A;  5A0M A;  1B24 A;  4UNC A;  4AAB A;  4UNA A;  1LWS A;  2VBL B;  4Z1Z A;  1UM2 A;  2QOJ Z;  5A0M B;  2VBN A;  2VS7 A;  4Z20 A;  1M5X A;  4UN9 G;  2VBO A;  3MXB B;  4EFJ A;  3MXA A;  3KO2 A;  2DCH X;  2VBN B;  1G9Y A;  2AB5 A;  1VDE A;  1N3F A;  5E63 A;  4UNB A;  3OOL A;  3R7P A;  1U0D A;  4YIT A;  4UN7 G;  4UT0 A;  2XE0 B;  1T9I A;  5A74 A;  5AKM A;  4YIS A;  1P8K Z;  4UN9 A;  4LOX A;  3EH8 A;  5E5S A;  3E54 A;  4UN8 G;  3C0W A;  4D6O A;  1AF5 A;  5E67 A;  3MX9 A;  4LQ0 A;  2VBO B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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