1GD5A

Solution structure of the px domain from human p47phox nadph oxidase
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
130
structure length
130
Chain Sequence
GSMGDTFIRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDLKLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords NEUTROPHIL CYTOSOL FACTOR 1
publication title Solution structure of the PX domain, a target of the SH3 domain.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Protein binding
total genus 29
structure length 130
sequence length 130
ec nomenclature
pdb deposition date 2000-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 1gd5A00
2YPSA 3FOGA 4HASA 2L73A 4IKDA 4AKVA 3P0CA 4P2IA 4P2JA 4PQPA 1KMDA 3IQ2A 1XTNA 3HPBA 2AR5A 2REAA 2WWEA 3DYTA 4IKBB 4PZGA 1KQ6A 2I4KA 2CZOA 4PQOA 1XTEA 1GD5A 4ON3A 4IKBA 4OXWA 2CSKA 2RAJA 3HPCX 1O7KA 4BGJA 2IWLX 4AZ9A 2REDA 2RAIA 2V6VA 3LUIA 1OCUA 1H6HA 2ETTA 2V14A 1OCSA 2RAKA 2DYBA
chains in the Genus database with same CATH superfamily
2YPSA 3FOGA 4HASA 2L73A 4IKDA 4AKVA 3P0CA 4P2IA 4P2JA 4PQPA 1KMDA 3IQ2A 1XTNA 3HPBA 2AR5A 2REAA 2WWEA 3DYTA 4IKBB 4PZGA 1KQ6A 2I4KA 2CZOA 4PQOA 1XTEA 1GD5A 4ON3A 4IKBA 4OXWA 2CSKA 2RAJA 3HPCX 1O7KA 4BGJA 2IWLX 4AZ9A 2REDA 2RAIA 2V6VA 3LUIA 1OCUA 1H6HA 2ETTA 2V14A 1OCSA 2RAKA 2DYBA
chains in the Genus database with same CATH topology
2YPSA 3FOGA 4HASA 2L73A 4IKDA 4AKVA 3P0CA 4P2IA 4P2JA 4PQPA 1KMDA 3IQ2A 1XTNA 3HPBA 2AR5A 2REAA 2WWEA 3DYTA 4IKBB 4PZGA 1KQ6A 2I4KA 2CZOA 4PQOA 1XTEA 1GD5A 4ON3A 4IKBA 4OXWA 2CSKA 2RAJA 3HPCX 1O7KA 4BGJA 2IWLX 4AZ9A 2REDA 2RAIA 2V6VA 3LUIA 1OCUA 1H6HA 2ETTA 2V14A 1OCSA 2RAKA 2DYBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YPS A;  3FOG A;  4HAS A;  2L73 A;  4IKD A;  4AKV A;  3P0C A;  4P2I A;  4P2J A;  4PQP A;  1KMD A;  3IQ2 A;  1XTN A;  3HPB A;  2AR5 A;  2REA A;  2WWE A;  3DYT A;  4IKB B;  4PZG A;  1KQ6 A;  2I4K A;  2CZO A;  4PQO A;  1XTE A;  1GD5 A;  4ON3 A;  4IKB A;  4OXW A;  2CSK A;  2RAJ A;  3HPC X;  1O7K A;  4BGJ A;  2IWL X;  4AZ9 A;  2RED A;  2RAI A;  2V6V A;  3LUI A;  1OCU A;  1H6H A;  2ETT A;  2V14 A;  1OCS A;  2RAK A;  2DYB A; 
#chains in the Genus database with same CATH topology
 2YPS A;  3FOG A;  4HAS A;  2L73 A;  4IKD A;  4AKV A;  3P0C A;  4P2I A;  4P2J A;  4PQP A;  1KMD A;  3IQ2 A;  1XTN A;  3HPB A;  2AR5 A;  2REA A;  2WWE A;  3DYT A;  4IKB B;  4PZG A;  1KQ6 A;  2I4K A;  2CZO A;  4PQO A;  1XTE A;  1GD5 A;  4ON3 A;  4IKB A;  4OXW A;  2CSK A;  2RAJ A;  3HPC X;  1O7K A;  4BGJ A;  2IWL X;  4AZ9 A;  2RED A;  2RAI A;  2V6V A;  3LUI A;  1OCU A;  1H6H A;  2ETT A;  2V14 A;  1OCS A;  2RAK A;  2DYB A; 
#chains in the Genus database with same CATH homology
 2YPS A;  3FOG A;  4HAS A;  2L73 A;  4IKD A;  4AKV A;  3P0C A;  4P2I A;  4P2J A;  4PQP A;  1KMD A;  3IQ2 A;  1XTN A;  3HPB A;  2AR5 A;  2REA A;  2WWE A;  3DYT A;  4IKB B;  4PZG A;  1KQ6 A;  2I4K A;  2CZO A;  4PQO A;  1XTE A;  1GD5 A;  4ON3 A;  4IKB A;  4OXW A;  2CSK A;  2RAJ A;  3HPC X;  1O7K A;  4BGJ A;  2IWL X;  4AZ9 A;  2RED A;  2RAI A;  2V6V A;  3LUI A;  1OCU A;  1H6H A;  2ETT A;  2V14 A;  1OCS A;  2RAK A;  2DYB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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