1GD5A

Solution structure of the px domain from human p47phox nadph oxidase
Total Genus 29
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
130
structure length
130
Chain Sequence
GSMGDTFIRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDLKLP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Protein binding
molecule keywords NEUTROPHIL CYTOSOL FACTOR 1
publication title Solution structure of the PX domain, a target of the SH3 domain.
pubmed doi rcsb
source organism Homo sapiens
total genus 29
structure length 130
sequence length 130
ec nomenclature
pdb deposition date 2000-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 1gd5A00
1XTEA 2YPSA 4IKDA 1OCUA 2IWLX 2RAJA 4IKBA 4P2JA 4PQPA 4BGJA 1GD5A 1H6HA 2V6VA 4PZGA 1OCSA 4AKVA 2REAA 2L73A 3DYTA 2DYBA 4HASA 1XTNA 2REDA 4P2IA 2WWEA 1O7KA 3IQ2A 2I4KA 2CZOA 4IKBB 3HPCX 2RAKA 2CSKA 4AZ9A 3FOGA 3HPBA 3LUIA 2RAIA 2V14A 4ON3A 1KMDA 1KQ6A 4OXWA 3P0CA 4PQOA 2AR5A 2ETTA
chains in the Genus database with same CATH superfamily
1XTEA 2YPSA 4IKDA 1OCUA 2IWLX 2RAJA 4IKBA 4P2JA 4PQPA 4BGJA 1GD5A 1H6HA 2V6VA 4PZGA 1OCSA 4AKVA 2REAA 2L73A 3DYTA 2DYBA 4HASA 1XTNA 2REDA 4P2IA 2WWEA 1O7KA 3IQ2A 2I4KA 2CZOA 4IKBB 3HPCX 2RAKA 2CSKA 4AZ9A 3FOGA 3HPBA 3LUIA 2RAIA 2V14A 4ON3A 1KMDA 1KQ6A 4OXWA 3P0CA 4PQOA 2AR5A 2ETTA
chains in the Genus database with same CATH topology
1XTEA 2YPSA 4IKDA 1OCUA 2IWLX 2RAJA 4IKBA 4P2JA 4PQPA 4BGJA 1GD5A 1H6HA 2V6VA 4PZGA 1OCSA 4AKVA 2REAA 2L73A 3DYTA 2DYBA 4HASA 1XTNA 2REDA 4P2IA 2WWEA 1O7KA 3IQ2A 2I4KA 2CZOA 4IKBB 3HPCX 2RAKA 2CSKA 4AZ9A 3FOGA 3HPBA 3LUIA 2RAIA 2V14A 4ON3A 1KMDA 1KQ6A 4OXWA 3P0CA 4PQOA 2AR5A 2ETTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XTE A;  2YPS A;  4IKD A;  1OCU A;  2IWL X;  2RAJ A;  4IKB A;  4P2J A;  4PQP A;  4BGJ A;  1GD5 A;  1H6H A;  2V6V A;  4PZG A;  1OCS A;  4AKV A;  2REA A;  2L73 A;  3DYT A;  2DYB A;  4HAS A;  1XTN A;  2RED A;  4P2I A;  2WWE A;  1O7K A;  3IQ2 A;  2I4K A;  2CZO A;  4IKB B;  3HPC X;  2RAK A;  2CSK A;  4AZ9 A;  3FOG A;  3HPB A;  3LUI A;  2RAI A;  2V14 A;  4ON3 A;  1KMD A;  1KQ6 A;  4OXW A;  3P0C A;  4PQO A;  2AR5 A;  2ETT A; 
#chains in the Genus database with same CATH topology
 1XTE A;  2YPS A;  4IKD A;  1OCU A;  2IWL X;  2RAJ A;  4IKB A;  4P2J A;  4PQP A;  4BGJ A;  1GD5 A;  1H6H A;  2V6V A;  4PZG A;  1OCS A;  4AKV A;  2REA A;  2L73 A;  3DYT A;  2DYB A;  4HAS A;  1XTN A;  2RED A;  4P2I A;  2WWE A;  1O7K A;  3IQ2 A;  2I4K A;  2CZO A;  4IKB B;  3HPC X;  2RAK A;  2CSK A;  4AZ9 A;  3FOG A;  3HPB A;  3LUI A;  2RAI A;  2V14 A;  4ON3 A;  1KMD A;  1KQ6 A;  4OXW A;  3P0C A;  4PQO A;  2AR5 A;  2ETT A; 
#chains in the Genus database with same CATH homology
 1XTE A;  2YPS A;  4IKD A;  1OCU A;  2IWL X;  2RAJ A;  4IKB A;  4P2J A;  4PQP A;  4BGJ A;  1GD5 A;  1H6H A;  2V6V A;  4PZG A;  1OCS A;  4AKV A;  2REA A;  2L73 A;  3DYT A;  2DYB A;  4HAS A;  1XTN A;  2RED A;  4P2I A;  2WWE A;  1O7K A;  3IQ2 A;  2I4K A;  2CZO A;  4IKB B;  3HPC X;  2RAK A;  2CSK A;  4AZ9 A;  3FOG A;  3HPB A;  3LUI A;  2RAI A;  2V14 A;  4ON3 A;  1KMD A;  1KQ6 A;  4OXW A;  3P0C A;  4PQO A;  2AR5 A;  2ETT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...