1GENA

C-terminal domain of gelatinase a
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
200
structure length
200
Chain Sequence
LGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase (metalloprotease)
molecule keywords GELATINASE A
publication title Crystal structure of the haemopexin-like C-terminal domain of gelatinase A.
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 200
sequence length 200
ec nomenclature ec 3.4.24.24: Gelatinase A.
pdb deposition date 1995-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00045 Hemopexin Hemopexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 1genA00
4FVLA 3S18A 1PEXA 1FBLA 1GENA 4AUOA 1CK7A 4G0DA 3C7XA 1SU3A 2JXYA 3V6NA 2MQSA 4RT6B 3LP9A 4YEHA 3OYOA 3BA0A 1HXNA 4OEIA 1ITVA 4FU4A 4HSDA 1QJSA 4LL2A 1GXDA 1QHUA 1RTGA 2CLTA
chains in the Genus database with same CATH superfamily
4FVLA 3S18A 1PEXA 1FBLA 1GENA 4AUOA 1CK7A 4G0DA 3C7XA 1SU3A 2JXYA 3V6NA 2MQSA 4RT6B 3LP9A 4YEHA 3OYOA 3BA0A 1HXNA 4OEIA 1ITVA 4FU4A 4HSDA 1QJSA 4LL2A 1GXDA 1QHUA 1RTGA 2CLTA
chains in the Genus database with same CATH topology
4FVLA 3S18A 1PEXA 1FBLA 1GENA 4AUOA 1CK7A 4G0DA 3C7XA 1SU3A 2JXYA 3V6NA 2MQSA 4RT6B 3LP9A 4YEHA 3OYOA 3BA0A 1HXNA 4OEIA 1ITVA 4FU4A 4HSDA 1QJSA 4LL2A 1GXDA 1QHUA 1RTGA 2CLTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FVL A;  3S18 A;  1PEX A;  1FBL A;  1GEN A;  4AUO A;  1CK7 A;  4G0D A;  3C7X A;  1SU3 A;  2JXY A;  3V6N A;  2MQS A;  4RT6 B;  3LP9 A;  4YEH A;  3OYO A;  3BA0 A;  1HXN A;  4OEI A;  1ITV A;  4FU4 A;  4HSD A;  1QJS A;  4LL2 A;  1GXD A;  1QHU A;  1RTG A;  2CLT A; 
#chains in the Genus database with same CATH topology
 4FVL A;  3S18 A;  1PEX A;  1FBL A;  1GEN A;  4AUO A;  1CK7 A;  4G0D A;  3C7X A;  1SU3 A;  2JXY A;  3V6N A;  2MQS A;  4RT6 B;  3LP9 A;  4YEH A;  3OYO A;  3BA0 A;  1HXN A;  4OEI A;  1ITV A;  4FU4 A;  4HSD A;  1QJS A;  4LL2 A;  1GXD A;  1QHU A;  1RTG A;  2CLT A; 
#chains in the Genus database with same CATH homology
 4FVL A;  3S18 A;  1PEX A;  1FBL A;  1GEN A;  4AUO A;  1CK7 A;  4G0D A;  3C7X A;  1SU3 A;  2JXY A;  3V6N A;  2MQS A;  4RT6 B;  3LP9 A;  4YEH A;  3OYO A;  3BA0 A;  1HXN A;  4OEI A;  1ITV A;  4FU4 A;  4HSD A;  1QJS A;  4LL2 A;  1GXD A;  1QHU A;  1RTG A;  2CLT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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