1GFPA

Ompf porin (mutant r42c)
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
340
structure length
340
Chain Sequence
AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYACLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transmembrane protein
molecule keywords MATRIX PORIN OUTER MEMBRANE PROTEIN F
publication title Structural and functional characterization of OmpF porin mutants selected for larger pore size. I. Crystallographic analysis.
pubmed doi rcsb
source organism Escherichia coli
total genus 107
structure length 340
sequence length 340
ec nomenclature
pdb deposition date 1996-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1gfpA00
4D64A 4D5UA 5DL5A 4KRAA 5FVNA 5JDPA 5PRNA 4LSHA 3T24A 3SYSA 4RJWA 3VY9X 3K19A 2O4VA 4FSOA 2ZLDA 2PRNA 4C69X 2ODJA 3SY9A 2Y0KA 3UPGA 3UU2A 1HXTA 1HXUA 1BH3A 1GFMA 1PRNA 1GFQA 1PHOA 5DL6A 2Y0HA 4FOZA 4GCQA 6PRNA 1OSMA 4KR8A 3A2SX 3T0SA 4AUIA 3O0EA 3VZWX 2XE3A 1GFOA 2QTKA 1HXXA 4JFBA 4FSPA 1OPFA 2OMFA 3EMNX 3HWBA 2XE5A 1GFNA 5DL7A 1GFPA 2ZFGA 4KR4A 3SZDA 3SYBA 3NSGA 3HW9A 2XE2A 4GCSA 3POUA 2Y2XA 2J4UP 4FT6A 2FGRA 2K4TA 3PRNA 3PORA 3FYXA 1BT9A 2XG6A 4FMSA 4LSFA 4RJXA 3SY7A 1H6S1 3POXA 4FRTA 3SZVA 1MPFA 3JTYA 3VZUX 4GCPA 4LSEA 3WI5A 3WI4A 7PRNA 2J1NA 4FRXA 3POQA 2PORA 3VZTX 2FGQX 8PRNA 4D65A 4BUMX 5DL8A 3VY8X 2XE1A 2Y0LA 4LSIA 1E54A 3T20A
chains in the Genus database with same CATH superfamily
4C4VB 4D64A 2R4NA 2KXPB 2R89A 3BS0A 3PGUA 4D5UA 3AA6A 3GP6A 1T1LA 2XTQA 5E79O 5DL5A 4KRAA 5FVNA 3AAAA 5JDPA 3LK42 3JCUO 1P4TA 1ZHWA 3PGRA 5KAIO 5PRNA 4LSHA 3T24A 2X9KA 3SYSA 4UB6O 2M06A 3AA7A 4FUVA 4FZNA 4FZLA 4RJWA 5D5DA 5KAFO 3VY9X 2F1CX 3NJTA 3PQUA 3K19A 4K3CA 5G38A 2O4VA 4FSOA 3AA1A 2ZLDA 4Z3TA 3DWNA 2PRNA 2AXTO 4PUXA 4B61A 2K0LA 1ZHTA 1QJPA 4C69X 4XNLA 3LK41 4GF4A 3LK2A 2Y7SA 2ODJA 3SY9A 2Y0KA 3UPGA 4N59A 3AA0A 4C4VA 3UU2A 3PGSA 1HXTA 5G26A 3BRYA 1HXUA 1Q9GA 1BH3A 1GFMA 2YPVA 3V8UA 5ADXK 1PRNA 1Q9FA 3PF1A 1GFQA 1PHOA 3KVDD 3A0HO 5B5EO 5DL6A 2WJQA 2Y0HA 4FOZA 4GCQA 4E1TA 6PRNA 4AYMC 2R4OA 1MM5A 1OSMA 2IWVA 1G90A 1YS5A 4UB8O 4FESA 4AYID 4KR8A 2KZ7A 4AZLA 3A2SX 4N74A 5G3AA 3T0SA 4AUIA 2YNKA 3O0EA 3AAEB 3VZWX 2XE3A 5GTHO 1GFOA 2W81C 2MHLA 3QRCA 1IZNB 4O49A 4O3WA 2LHFA 4JCHA 4AYNA 3HOEA 2QTKA 2X27X 4G75A 1T16A 4N58A 2F1VA 1HXXA 4RLCA 4JFBA 5IYUA 2KXPA 2JQYA 2XTRA 3BRZA 4FSPA 1OPFA 2OMFA 2ERVA 3EMNX 3G7GA 3HWBA 2M07A 2MNHA 4QQ1A 3SZVA 4AKRB 2XE5A 1GFNA 3DZMA 3PQSA 5DL7A 1ZHXA 4K3BA 1THQA 2F1TA 4E1SA 2N2MA 1QJ8A 1GFPA 2R8AA 2N2LA 2ZFGA 4KR4A 5ADXL 2IWWA 3C5OA 1ZHZA 3SZDA 3SYBA 5T5FA 3NSGA 4O4XA 3HW9A 4AYEC 2XE2A 4CTDA 3LK3B 3AAEA 4C00A 4GCSA 3AA1B 3DA3A 4RL9A 2R4LA 1ORMA 3POUA 2GE4A 4F4BA 2Y2XA 4O3XB 5TISO 2J4UP 4FT6A 4G76A 2FGRA 2K4TA 3AA0B 2JMMA 3HOLA 3PRNA 5H2FO 5B66O 1QJ9A 2R88A 2KDYA 3PORA 4AKRA 3FYXA 4RLBA 4O4UA 1BT9A 2XG6A 3DA4A 4FQEA 4N75A 5G39A 2W80C 3RBHA 4FMSA 3TZGA 4AKMA 3AA6B 5GV0A 2WJRA 4LSFA 4RJXA 3SY7A 1H6S1 3POXA 3QRAA 4FRTA 1MPFA 3AAAB 3JTYA 4FZMA 4U9CA 4GCPA 3VZUX 4LSEA 4IL6O 3UAQA 3WI5A 3WI4A 1MM4A 3DWOX 5AFUK 7PRNA 2J1NA 3WU2O 4FRXA 3LK3A 5EE2A 3AA7B 3POQA 2PORA 2KZ7B 3VZTX 5AFUL 4AFKA 2FGQX 3VE1A 1S5LO 4PJ0O 3VE2A 8PRNA 2WVPA 2KC0A 4D65A 4BUMX 5DL8A 3KZIO 1BXWA 4PR7A 3VY8X 1IZNA 2XMXA 2XE1A 2Y0LA 5GTIO 4LSIA 2R4PA 3A0BO 2LFUA 1E54A 1ZHYA 3LK2B 4O3YA 4O3ZA 4XNKA 4GHBA 4AYDC 3T20A
chains in the Genus database with same CATH topology
4D64A 2KXPB 4D5UA 3AA6A 3GP6A 2XTQA 5DL5A 4KRAA 5FVNA 3AAAA 5JDPA 3LK42 1P4TA 1ZHWA 5PRNA 4LSHA 3T24A 3SYSA 2M06A 3AA7A 4FUVA 4FZNA 4FZLA 4RJWA 5D5DA 3VY9X 3PQUA 3K19A 2O4VA 4FSOA 3AA1A 2ZLDA 4Z3TA 2PRNA 4PUXA 4B61A 2K0LA 1ZHTA 1QJPA 4C69X 4XNLA 3LK41 4GF4A 3LK2A 2Y7SA 2ODJA 3SY9A 2Y0KA 3UPGA 4N59A 3AA0A 3UU2A 1HXTA 5G26A 1HXUA 1Q9GA 1BH3A 1GFMA 2YPVA 3V8UA 5ADXK 1PRNA 1Q9FA 1GFQA 1PHOA 3KVDD 5DL6A 2Y0HA 4FOZA 4GCQA 4E1TA 6PRNA 4AYMC 1MM5A 1OSMA 1G90A 1YS5A 4AYID 4FESA 4KR8A 2KZ7A 4AZLA 3A2SX 3T0SA 4AUIA 2YNKA 3O0EA 3AAEB 3VZWX 2XE3A 1GFOA 2W81C 2MHLA 3QRCA 1IZNB 4O49A 4O3WA 2LHFA 4JCHA 4AYNA 3HOEA 2QTKA 2X27X 4G75A 4N58A 2F1VA 1HXXA 4RLCA 4JFBA 5IYUA 2KXPA 2XTRA 4FSPA 1OPFA 2OMFA 2ERVA 3EMNX 3G7GA 3HWBA 2M07A 2MNHA 4QQ1A 3SZVA 4AKRB 2XE5A 1GFNA 3PQSA 5DL7A 4E1SA 1ZHXA 1THQA 2F1TA 2N2MA 1QJ8A 1GFPA 2ZFGA 2N2LA 4KR4A 5ADXL 3C5OA 1ZHZA 3SZDA 3SYBA 5T5FA 3NSGA 4O4XA 3HW9A 4AYEC 2XE2A 3LK3B 3AAEA 4GCSA 3AA1B 3DA3A 4RL9A 1ORMA 3POUA 2GE4A 4F4BA 2Y2XA 4O3XB 2J4UP 4FT6A 4G76A 2FGRA 2K4TA 3AA0B 2JMMA 3HOLA 3PRNA 1QJ9A 2KDYA 3PORA 4AKRA 3FYXA 4RLBA 4O4UA 1BT9A 2XG6A 3DA4A 3TZGA 3RBHA 2W80C 4FMSA 4AKMA 3AA6B 5GV0A 4LSFA 4RJXA 3SY7A 1H6S1 3POXA 3QRAA 4FRTA 1MPFA 3AAAB 3JTYA 4FZMA 4U9CA 4GCPA 3VZUX 4LSEA 3UAQA 3WI5A 3WI4A 5AFUK 1MM4A 7PRNA 2J1NA 4FRXA 3LK3A 5EE2A 3AA7B 3POQA 2PORA 2KZ7B 3VZTX 5AFUL 4AFKA 2FGQX 3VE1A 3VE2A 8PRNA 2KC0A 4D65A 4BUMX 5DL8A 3VY8X 1BXWA 1IZNA 2XMXA 2XE1A 2Y0LA 4LSIA 2LFUA 1E54A 1ZHYA 3LK2B 4O3YA 4O3ZA 4XNKA 4GHBA 4AYDC 3T20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D64 A;  4D5U A;  5DL5 A;  4KRA A;  5FVN A;  5JDP A;  5PRN A;  4LSH A;  3T24 A;  3SYS A;  4RJW A;  3VY9 X;  3K19 A;  2O4V A;  4FSO A;  2ZLD A;  2PRN A;  4C69 X;  2ODJ A;  3SY9 A;  2Y0K A;  3UPG A;  3UU2 A;  1HXT A;  1HXU A;  1BH3 A;  1GFM A;  1PRN A;  1GFQ A;  1PHO A;  5DL6 A;  2Y0H A;  4FOZ A;  4GCQ A;  6PRN A;  1OSM A;  4KR8 A;  3A2S X;  3T0S A;  4AUI A;  3O0E A;  3VZW X;  2XE3 A;  1GFO A;  2QTK A;  1HXX A;  4JFB A;  4FSP A;  1OPF A;  2OMF A;  3EMN X;  3HWB A;  2XE5 A;  1GFN A;  5DL7 A;  1GFP A;  2ZFG A;  4KR4 A;  3SZD A;  3SYB A;  3NSG A;  3HW9 A;  2XE2 A;  4GCS A;  3POU A;  2Y2X A;  2J4U P;  4FT6 A;  2FGR A;  2K4T A;  3PRN A;  3POR A;  3FYX A;  1BT9 A;  2XG6 A;  4FMS A;  4LSF A;  4RJX A;  3SY7 A;  1H6S 1;  3POX A;  4FRT A;  3SZV A;  1MPF A;  3JTY A;  3VZU X;  4GCP A;  4LSE A;  3WI5 A;  3WI4 A;  7PRN A;  2J1N A;  4FRX A;  3POQ A;  2POR A;  3VZT X;  2FGQ X;  8PRN A;  4D65 A;  4BUM X;  5DL8 A;  3VY8 X;  2XE1 A;  2Y0L A;  4LSI A;  1E54 A;  3T20 A; 
#chains in the Genus database with same CATH topology
 4C4V B;  4D64 A;  2R4N A;  2KXP B;  2R89 A;  3BS0 A;  3PGU A;  4D5U A;  3AA6 A;  3GP6 A;  1T1L A;  2XTQ A;  5E79 O;  5DL5 A;  4KRA A;  5FVN A;  3AAA A;  5JDP A;  3LK4 2;  3JCU O;  1P4T A;  1ZHW A;  3PGR A;  5KAI O;  5PRN A;  4LSH A;  3T24 A;  2X9K A;  3SYS A;  4UB6 O;  2M06 A;  3AA7 A;  4FUV A;  4FZN A;  4FZL A;  4RJW A;  5D5D A;  5KAF O;  3VY9 X;  2F1C X;  3NJT A;  3PQU A;  3K19 A;  4K3C A;  5G38 A;  2O4V A;  4FSO A;  3AA1 A;  2ZLD A;  4Z3T A;  3DWN A;  2PRN A;  2AXT O;  4PUX A;  4B61 A;  2K0L A;  1ZHT A;  1QJP A;  4C69 X;  4XNL A;  3LK4 1;  4GF4 A;  3LK2 A;  2Y7S A;  2ODJ A;  3SY9 A;  2Y0K A;  3UPG A;  4N59 A;  3AA0 A;  4C4V A;  3UU2 A;  3PGS A;  1HXT A;  5G26 A;  3BRY A;  1HXU A;  1Q9G A;  1BH3 A;  1GFM A;  2YPV A;  3V8U A;  5ADX K;  1PRN A;  1Q9F A;  3PF1 A;  1GFQ A;  1PHO A;  3KVD D;  3A0H O;  5B5E O;  5DL6 A;  2WJQ A;  2Y0H A;  4FOZ A;  4GCQ A;  4E1T A;  6PRN A;  4AYM C;  2R4O A;  1MM5 A;  1OSM A;  2IWV A;  1G90 A;  1YS5 A;  4UB8 O;  4FES A;  4AYI D;  4KR8 A;  2KZ7 A;  4AZL A;  3A2S X;  4N74 A;  5G3A A;  3T0S A;  4AUI A;  2YNK A;  3O0E A;  3AAE B;  3VZW X;  2XE3 A;  5GTH O;  1GFO A;  2W81 C;  2MHL A;  3QRC A;  1IZN B;  4O49 A;  4O3W A;  2LHF A;  4JCH A;  4AYN A;  3HOE A;  2QTK A;  2X27 X;  4G75 A;  1T16 A;  4N58 A;  2F1V A;  1HXX A;  4RLC A;  4JFB A;  5IYU A;  2KXP A;  2JQY A;  2XTR A;  3BRZ A;  4FSP A;  1OPF A;  2OMF A;  2ERV A;  3EMN X;  3G7G A;  3HWB A;  2M07 A;  2MNH A;  4QQ1 A;  3SZV A;  4AKR B;  2XE5 A;  1GFN A;  3DZM A;  3PQS A;  5DL7 A;  1ZHX A;  4K3B A;  1THQ A;  2F1T A;  4E1S A;  2N2M A;  1QJ8 A;  1GFP A;  2R8A A;  2N2L A;  2ZFG A;  4KR4 A;  5ADX L;  2IWW A;  3C5O A;  1ZHZ A;  3SZD A;  3SYB A;  5T5F A;  3NSG A;  4O4X A;  3HW9 A;  4AYE C;  2XE2 A;  4CTD A;  3LK3 B;  3AAE A;  4C00 A;  4GCS A;  3AA1 B;  3DA3 A;  4RL9 A;  2R4L A;  1ORM A;  3POU A;  2GE4 A;  4F4B A;  2Y2X A;  4O3X B;  5TIS O;  2J4U P;  4FT6 A;  4G76 A;  2FGR A;  2K4T A;  3AA0 B;  2JMM A;  3HOL A;  3PRN A;  5H2F O;  5B66 O;  1QJ9 A;  2R88 A;  2KDY A;  3POR A;  4AKR A;  3FYX A;  4RLB A;  4O4U A;  1BT9 A;  2XG6 A;  3DA4 A;  4FQE A;  4N75 A;  5G39 A;  2W80 C;  3RBH A;  4FMS A;  3TZG A;  4AKM A;  3AA6 B;  5GV0 A;  2WJR A;  4LSF A;  4RJX A;  3SY7 A;  1H6S 1;  3POX A;  3QRA A;  4FRT A;  1MPF A;  3AAA B;  3JTY A;  4FZM A;  4U9C A;  4GCP A;  3VZU X;  4LSE A;  4IL6 O;  3UAQ A;  3WI5 A;  3WI4 A;  1MM4 A;  3DWO X;  5AFU K;  7PRN A;  2J1N A;  3WU2 O;  4FRX A;  3LK3 A;  5EE2 A;  3AA7 B;  3POQ A;  2POR A;  2KZ7 B;  3VZT X;  5AFU L;  4AFK A;  2FGQ X;  3VE1 A;  1S5L O;  4PJ0 O;  3VE2 A;  8PRN A;  2WVP A;  2KC0 A;  4D65 A;  4BUM X;  5DL8 A;  3KZI O;  1BXW A;  4PR7 A;  3VY8 X;  1IZN A;  2XMX A;  2XE1 A;  2Y0L A;  5GTI O;  4LSI A;  2R4P A;  3A0B O;  2LFU A;  1E54 A;  1ZHY A;  3LK2 B;  4O3Y A;  4O3Z A;  4XNK A;  4GHB A;  4AYD C;  3T20 A; 
#chains in the Genus database with same CATH homology
 4D64 A;  2KXP B;  4D5U A;  3AA6 A;  3GP6 A;  2XTQ A;  5DL5 A;  4KRA A;  5FVN A;  3AAA A;  5JDP A;  3LK4 2;  1P4T A;  1ZHW A;  5PRN A;  4LSH A;  3T24 A;  3SYS A;  2M06 A;  3AA7 A;  4FUV A;  4FZN A;  4FZL A;  4RJW A;  5D5D A;  3VY9 X;  3PQU A;  3K19 A;  2O4V A;  4FSO A;  3AA1 A;  2ZLD A;  4Z3T A;  2PRN A;  4PUX A;  4B61 A;  2K0L A;  1ZHT A;  1QJP A;  4C69 X;  4XNL A;  3LK4 1;  4GF4 A;  3LK2 A;  2Y7S A;  2ODJ A;  3SY9 A;  2Y0K A;  3UPG A;  4N59 A;  3AA0 A;  3UU2 A;  1HXT A;  5G26 A;  1HXU A;  1Q9G A;  1BH3 A;  1GFM A;  2YPV A;  3V8U A;  5ADX K;  1PRN A;  1Q9F A;  1GFQ A;  1PHO A;  3KVD D;  5DL6 A;  2Y0H A;  4FOZ A;  4GCQ A;  4E1T A;  6PRN A;  4AYM C;  1MM5 A;  1OSM A;  1G90 A;  1YS5 A;  4AYI D;  4FES A;  4KR8 A;  2KZ7 A;  4AZL A;  3A2S X;  3T0S A;  4AUI A;  2YNK A;  3O0E A;  3AAE B;  3VZW X;  2XE3 A;  1GFO A;  2W81 C;  2MHL A;  3QRC A;  1IZN B;  4O49 A;  4O3W A;  2LHF A;  4JCH A;  4AYN A;  3HOE A;  2QTK A;  2X27 X;  4G75 A;  4N58 A;  2F1V A;  1HXX A;  4RLC A;  4JFB A;  5IYU A;  2KXP A;  2XTR A;  4FSP A;  1OPF A;  2OMF A;  2ERV A;  3EMN X;  3G7G A;  3HWB A;  2M07 A;  2MNH A;  4QQ1 A;  3SZV A;  4AKR B;  2XE5 A;  1GFN A;  3PQS A;  5DL7 A;  4E1S A;  1ZHX A;  1THQ A;  2F1T A;  2N2M A;  1QJ8 A;  1GFP A;  2ZFG A;  2N2L A;  4KR4 A;  5ADX L;  3C5O A;  1ZHZ A;  3SZD A;  3SYB A;  5T5F A;  3NSG A;  4O4X A;  3HW9 A;  4AYE C;  2XE2 A;  3LK3 B;  3AAE A;  4GCS A;  3AA1 B;  3DA3 A;  4RL9 A;  1ORM A;  3POU A;  2GE4 A;  4F4B A;  2Y2X A;  4O3X B;  2J4U P;  4FT6 A;  4G76 A;  2FGR A;  2K4T A;  3AA0 B;  2JMM A;  3HOL A;  3PRN A;  1QJ9 A;  2KDY A;  3POR A;  4AKR A;  3FYX A;  4RLB A;  4O4U A;  1BT9 A;  2XG6 A;  3DA4 A;  3TZG A;  3RBH A;  2W80 C;  4FMS A;  4AKM A;  3AA6 B;  5GV0 A;  4LSF A;  4RJX A;  3SY7 A;  1H6S 1;  3POX A;  3QRA A;  4FRT A;  1MPF A;  3AAA B;  3JTY A;  4FZM A;  4U9C A;  4GCP A;  3VZU X;  4LSE A;  3UAQ A;  3WI5 A;  3WI4 A;  5AFU K;  1MM4 A;  7PRN A;  2J1N A;  4FRX A;  3LK3 A;  5EE2 A;  3AA7 B;  3POQ A;  2POR A;  2KZ7 B;  3VZT X;  5AFU L;  4AFK A;  2FGQ X;  3VE1 A;  3VE2 A;  8PRN A;  2KC0 A;  4D65 A;  4BUM X;  5DL8 A;  3VY8 X;  1BXW A;  1IZN A;  2XMX A;  2XE1 A;  2Y0L A;  4LSI A;  2LFU A;  1E54 A;  1ZHY A;  3LK2 B;  4O3Y A;  4O3Z A;  4XNK A;  4GHB A;  4AYD C;  3T20 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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