1GHDA

Crystal structure of the glutaryl-7-aminocephalosporanic acid acylase by mad phasing
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
153
structure length
153
Chain Sequence
QAPIAAYKPRSNEILWDGYGVPHIYGVDAPSAFYGYGWAQARSHGDNILRLYGEARGKGAEYWGPDYEQTTVWLLTNGVPERAQQWYAQQSPDFRANLDAFAAGINAYAQQNPDDISPDVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Affinity alkylation of the Trp-B4 residue of the beta -subunit of the glutaryl 7-aminocephalosporanic acid acylase of Pseudomonas sp. 130.
pubmed doi rcsb
molecule tags Hydrolase
source organism Pseudomonas sp. 130
molecule keywords GLUTARYL-7-AMINOCEPHALOSPORANIC ACID ACYLASE
total genus 48
structure length 153
sequence length 153
ec nomenclature ec 3.5.1.-:
pdb deposition date 2000-12-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 1ghdA00
4PELA 1K5QA 1FXHA 1CP9A 1GK1A 4M1JA 2WYBA 4E56A 2ADVA 1JVZA 1PNLA 3JTQA 1GHDA 4YFBA 4HSRA 3SRBA 4YF9A 4WKTA 4WKVA 4E55A 1K5SA 4K2FA 3ML0A 3L94A 1FXVA 2WYEA 2WYCA 1H2GA 1KEHA 1GM9A 1K7DA 1KECA 2AE4A 1GKFA 1JW0A 1AI5A 1JX9A 1GK0A 4WKSA 4WKUA 1FM2A 2AE3A 3SRAA 1GM8A 3L91A 3S8RA 4E57A 1PNMA 1AJPA 2AE5A 2WYDA 1AI6A 1AI4A 4YFAA 3K3WA 4BTHA 1AJNA 1GK9A 1OR0A 1AI7A 1PNKA 4PEMA 3SRCA 1GM7A 4K2GA 1E3AA 3JTRA 1AJQA 4HSTA
chains in the Genus database with same CATH superfamily
4PELA 1K5QA 1FXHA 1CP9A 1GK1A 4M1JA 2WYBA 4E56A 2ADVA 1JVZA 1PNLA 3JTQA 1GHDA 4YFBA 4HSRA 3SRBA 4YF9A 4BWCA 4WKTA 4WKVA 4E55A 1K5SA 4K2FA 3ML0A 3L94A 1FXVA 2WYEA 3FGRA 2WYCA 1H2GA 1KEHA 1GM9A 1K7DA 1KECA 2AE4A 1GKFA 1JW0A 1AI5A 1JX9A 3FGTA 1GK0A 4WKSA 4WKUA 1FM2A 2AE3A 3SRAA 1GM8A 3L91A 3S8RA 4E57A 1PNMA 1AJPA 2AE5A 2WYDA 1AI6A 1AI4A 4YFAA 3K3WA 4BTHA 1AJNA 1GK9A 1OR0A 1AI7A 1PNKA 4PEMA 3SRCA 1GM7A 4K2GA 1E3AA 3JTRA 1AJQA 4HSTA
chains in the Genus database with same CATH topology
4PELA 1K5QA 1FXHA 1CP9A 1GK1A 4M1JA 2WYBA 4E56A 2ADVA 1JVZA 1PNLA 3JTQA 1GHDA 4YFBA 4HSRA 3SRBA 4YF9A 4WKTA 4WKVA 4E55A 1K5SA 4K2FA 3ML0A 3L94A 1FXVA 2WYEA 2WYCA 1H2GA 1KEHA 1GM9A 1K7DA 1KECA 2AE4A 1GKFA 1JW0A 1AI5A 1JX9A 1GK0A 4WKSA 4WKUA 1FM2A 2AE3A 3SRAA 1GM8A 3L91A 3S8RA 4E57A 1PNMA 1AJPA 2AE5A 2WYDA 1AI6A 1AI4A 4YFAA 3K3WA 4BTHA 1AJNA 1GK9A 1OR0A 1AI7A 1PNKA 4PEMA 3SRCA 1GM7A 4K2GA 1E3AA 3JTRA 1AJQA 4HSTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PEL A;  1K5Q A;  1FXH A;  1CP9 A;  1GK1 A;  4M1J A;  2WYB A;  4E56 A;  2ADV A;  1JVZ A;  1PNL A;  3JTQ A;  1GHD A;  4YFB A;  4HSR A;  3SRB A;  4YF9 A;  4WKT A;  4WKV A;  4E55 A;  1K5S A;  4K2F A;  3ML0 A;  3L94 A;  1FXV A;  2WYE A;  2WYC A;  1H2G A;  1KEH A;  1GM9 A;  1K7D A;  1KEC A;  2AE4 A;  1GKF A;  1JW0 A;  1AI5 A;  1JX9 A;  1GK0 A;  4WKS A;  4WKU A;  1FM2 A;  2AE3 A;  3SRA A;  1GM8 A;  3L91 A;  3S8R A;  4E57 A;  1PNM A;  1AJP A;  2AE5 A;  2WYD A;  1AI6 A;  1AI4 A;  4YFA A;  3K3W A;  4BTH A;  1AJN A;  1GK9 A;  1OR0 A;  1AI7 A;  1PNK A;  4PEM A;  3SRC A;  1GM7 A;  4K2G A;  1E3A A;  3JTR A;  1AJQ A;  4HST A; 
#chains in the Genus database with same CATH topology
 4PEL A;  1K5Q A;  1FXH A;  1CP9 A;  1GK1 A;  4M1J A;  2WYB A;  4E56 A;  2ADV A;  1JVZ A;  1PNL A;  3JTQ A;  1GHD A;  4YFB A;  4HSR A;  3SRB A;  4YF9 A;  4BWC A;  4WKT A;  4WKV A;  4E55 A;  1K5S A;  4K2F A;  3ML0 A;  3L94 A;  1FXV A;  2WYE A;  3FGR A;  2WYC A;  1H2G A;  1KEH A;  1GM9 A;  1K7D A;  1KEC A;  2AE4 A;  1GKF A;  1JW0 A;  1AI5 A;  1JX9 A;  3FGT A;  1GK0 A;  4WKS A;  4WKU A;  1FM2 A;  2AE3 A;  3SRA A;  1GM8 A;  3L91 A;  3S8R A;  4E57 A;  1PNM A;  1AJP A;  2AE5 A;  2WYD A;  1AI6 A;  1AI4 A;  4YFA A;  3K3W A;  4BTH A;  1AJN A;  1GK9 A;  1OR0 A;  1AI7 A;  1PNK A;  4PEM A;  3SRC A;  1GM7 A;  4K2G A;  1E3A A;  3JTR A;  1AJQ A;  4HST A; 
#chains in the Genus database with same CATH homology
 4PEL A;  1K5Q A;  1FXH A;  1CP9 A;  1GK1 A;  4M1J A;  2WYB A;  4E56 A;  2ADV A;  1JVZ A;  1PNL A;  3JTQ A;  1GHD A;  4YFB A;  4HSR A;  3SRB A;  4YF9 A;  4WKT A;  4WKV A;  4E55 A;  1K5S A;  4K2F A;  3ML0 A;  3L94 A;  1FXV A;  2WYE A;  2WYC A;  1H2G A;  1KEH A;  1GM9 A;  1K7D A;  1KEC A;  2AE4 A;  1GKF A;  1JW0 A;  1AI5 A;  1JX9 A;  1GK0 A;  4WKS A;  4WKU A;  1FM2 A;  2AE3 A;  3SRA A;  1GM8 A;  3L91 A;  3S8R A;  4E57 A;  1PNM A;  1AJP A;  2AE5 A;  2WYD A;  1AI6 A;  1AI4 A;  4YFA A;  3K3W A;  4BTH A;  1AJN A;  1GK9 A;  1OR0 A;  1AI7 A;  1PNK A;  4PEM A;  3SRC A;  1GM7 A;  4K2G A;  1E3A A;  3JTR A;  1AJQ A;  4HST A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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