1GIQA

Crystal structure of the enzymatic componet of iota-toxin from clostridium perfringens with nadh
Total Genus 133
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
411
structure length
411
Chain Sequence
IERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLPKNTGMLPYINSNDVKTLIEQDYSIKIDKIVRIVIEGKQYIKAEASIVNSLDFKDDVSKGDLWGKENYSDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDATLIN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords IOTA TOXIN COMPONENT IA
publication title Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin
pubmed doi rcsb
molecule tags Toxin
total genus 133
structure length 411
sequence length 411
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1giqA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1giqA01
2C8EE 4H0XA 1R45A 2WN7A 4XM6A 5H03A 1PWVA 1ZXVA 5D1UA 1GY0A 4PKSA 3BUZA 2BOVB 4FXQA 5BWMB 2WN6A 2C8GA 1OG3A 4XM8A 2WN5A 5GTTA 2WN4A 2C8AA 4TR5A 3U0JA 4FK7A 2A78B 2C8CA 1G24A 3BW8A 4H0VA 1QS2A 4PKUA 1PWPA 4ELNA 5DZQA 4XM7A 4GF1A 1UZIA 1OG4A 1OG1A 1GZFA 1YQYA 1GIRA 4H0YA 4H0TA 2J3ZA 4XSGB 1OJQA 4WF6A 4GY2A 1OJZA 4PKTA 5D1TA 4FMLA 1GXYA 4PKQA 2GWLA 2C89A 2J3XA 1R4BA 4PKRA 1GXZA 2WN8A 3NTSA 1PWUA 4PKVA 2C8FE 1GZEA 5H04A 1QS1A 1PWQA 1J7NA 2GWMA 2C8BX 4DV8A 2C8HA 4H03A 1GIQA 1PWWA 2J3VA 1JKYA 2A9KB 4PKWA 5D1SA 4XSHB 2C8DA
chains in the Genus database with same CATH superfamily
2C8EE 4H0XA 1R45A 2WN7A 4XM6A 5H03A 1PWVA 1ZXVA 5D1UA 1GY0A 4PKSA 3BUZA 2BOVB 4FXQA 5BWMB 2WN6A 2C8GA 1OG3A 4XM8A 2WN5A 5GTTA 2WN4A 2C8AA 4TR5A 3U0JA 4FK7A 2A78B 2C8CA 1G24A 3BW8A 4H0VA 1QS2A 4PKUA 1PWPA 4ELNA 5DZQA 4XM7A 4GF1A 1UZIA 1OG4A 1OG1A 1GZFA 1YQYA 1GIRA 4H0YA 4H0TA 2J3ZA 4XSGB 1OJQA 4WF6A 4GY2A 1OJZA 4PKTA 5D1TA 4FMLA 1GXYA 4PKQA 2GWLA 2C89A 2J3XA 1R4BA 4PKRA 1GXZA 2WN8A 3NTSA 1PWUA 4PKVA 2C8FE 1GZEA 5H04A 1QS1A 1PWQA 1J7NA 2GWMA 2C8BX 4DV8A 2C8HA 4H03A 1GIQA 1PWWA 2J3VA 1JKYA 2A9KB 4PKWA 5D1SA 4XSHB 2C8DA
chains in the Genus database with same CATH topology
2C8EE 4H0XA 1R45A 2WN7A 4XM6A 5H03A 1PWVA 1ZXVA 5D1UA 1GY0A 4PKSA 3BUZA 2BOVB 4FXQA 5BWMB 2WN6A 2C8GA 1OG3A 4XM8A 2WN5A 5GTTA 2WN4A 2C8AA 4TR5A 3U0JA 4FK7A 2A78B 2C8CA 1G24A 3BW8A 4H0VA 1QS2A 4PKUA 1PWPA 4ELNA 5DZQA 4XM7A 4GF1A 1UZIA 1OG4A 1OG1A 1GZFA 1YQYA 1GIRA 4H0YA 4H0TA 2J3ZA 4XSGB 1OJQA 4WF6A 4GY2A 1OJZA 4PKTA 5D1TA 4FMLA 1GXYA 4PKQA 2GWLA 2C89A 2J3XA 1R4BA 4PKRA 1GXZA 2WN8A 3NTSA 1PWUA 4PKVA 2C8FE 1GZEA 5H04A 1QS1A 1PWQA 1J7NA 2GWMA 2C8BX 4DV8A 2C8HA 4H03A 1GIQA 1PWWA 2J3VA 1JKYA 2A9KB 4PKWA 5D1SA 4XSHB 2C8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C8E E;  4H0X A;  1R45 A;  2WN7 A;  4XM6 A;  5H03 A;  1PWV A;  1ZXV A;  5D1U A;  1GY0 A;  4PKS A;  3BUZ A;  2BOV B;  4FXQ A;  5BWM B;  2WN6 A;  2C8G A;  1OG3 A;  4XM8 A;  2WN5 A;  5GTT A;  2WN4 A;  2C8A A;  4TR5 A;  3U0J A;  4FK7 A;  2A78 B;  2C8C A;  1G24 A;  3BW8 A;  4H0V A;  1QS2 A;  4PKU A;  1PWP A;  4ELN A;  5DZQ A;  4XM7 A;  4GF1 A;  1UZI A;  1OG4 A;  1OG1 A;  1GZF A;  1YQY A;  1GIR A;  4H0Y A;  4H0T A;  2J3Z A;  4XSG B;  1OJQ A;  4WF6 A;  4GY2 A;  1OJZ A;  4PKT A;  5D1T A;  4FML A;  1GXY A;  4PKQ A;  2GWL A;  2C89 A;  2J3X A;  1R4B A;  4PKR A;  1GXZ A;  2WN8 A;  3NTS A;  1PWU A;  4PKV A;  2C8F E;  1GZE A;  5H04 A;  1QS1 A;  1PWQ A;  1J7N A;  2GWM A;  2C8B X;  4DV8 A;  2C8H A;  4H03 A;  1GIQ A;  1PWW A;  2J3V A;  1JKY A;  2A9K B;  4PKW A;  5D1S A;  4XSH B;  2C8D A; 
#chains in the Genus database with same CATH topology
 2C8E E;  4H0X A;  1R45 A;  2WN7 A;  4XM6 A;  5H03 A;  1PWV A;  1ZXV A;  5D1U A;  1GY0 A;  4PKS A;  3BUZ A;  2BOV B;  4FXQ A;  5BWM B;  2WN6 A;  2C8G A;  1OG3 A;  4XM8 A;  2WN5 A;  5GTT A;  2WN4 A;  2C8A A;  4TR5 A;  3U0J A;  4FK7 A;  2A78 B;  2C8C A;  1G24 A;  3BW8 A;  4H0V A;  1QS2 A;  4PKU A;  1PWP A;  4ELN A;  5DZQ A;  4XM7 A;  4GF1 A;  1UZI A;  1OG4 A;  1OG1 A;  1GZF A;  1YQY A;  1GIR A;  4H0Y A;  4H0T A;  2J3Z A;  4XSG B;  1OJQ A;  4WF6 A;  4GY2 A;  1OJZ A;  4PKT A;  5D1T A;  4FML A;  1GXY A;  4PKQ A;  2GWL A;  2C89 A;  2J3X A;  1R4B A;  4PKR A;  1GXZ A;  2WN8 A;  3NTS A;  1PWU A;  4PKV A;  2C8F E;  1GZE A;  5H04 A;  1QS1 A;  1PWQ A;  1J7N A;  2GWM A;  2C8B X;  4DV8 A;  2C8H A;  4H03 A;  1GIQ A;  1PWW A;  2J3V A;  1JKY A;  2A9K B;  4PKW A;  5D1S A;  4XSH B;  2C8D A; 
#chains in the Genus database with same CATH homology
 2C8E E;  4H0X A;  1R45 A;  2WN7 A;  4XM6 A;  5H03 A;  1PWV A;  1ZXV A;  5D1U A;  1GY0 A;  4PKS A;  3BUZ A;  2BOV B;  4FXQ A;  5BWM B;  2WN6 A;  2C8G A;  1OG3 A;  4XM8 A;  2WN5 A;  5GTT A;  2WN4 A;  2C8A A;  4TR5 A;  3U0J A;  4FK7 A;  2A78 B;  2C8C A;  1G24 A;  3BW8 A;  4H0V A;  1QS2 A;  4PKU A;  1PWP A;  4ELN A;  5DZQ A;  4XM7 A;  4GF1 A;  1UZI A;  1OG4 A;  1OG1 A;  1GZF A;  1YQY A;  1GIR A;  4H0Y A;  4H0T A;  2J3Z A;  4XSG B;  1OJQ A;  4WF6 A;  4GY2 A;  1OJZ A;  4PKT A;  5D1T A;  4FML A;  1GXY A;  4PKQ A;  2GWL A;  2C89 A;  2J3X A;  1R4B A;  4PKR A;  1GXZ A;  2WN8 A;  3NTS A;  1PWU A;  4PKV A;  2C8F E;  1GZE A;  5H04 A;  1QS1 A;  1PWQ A;  1J7N A;  2GWM A;  2C8B X;  4DV8 A;  2C8H A;  4H03 A;  1GIQ A;  1PWW A;  2J3V A;  1JKY A;  2A9K B;  4PKW A;  5D1S A;  4XSH B;  2C8D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...