1GIQA

Crystal structure of the enzymatic componet of iota-toxin from clostridium perfringens with nadh
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
411
structure length
411
Chain Sequence
IERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLPKNTGMLPYINSNDVKTLIEQDYSIKIDKIVRIVIEGKQYIKAEASIVNSLDFKDDVSKGDLWGKENYSDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDATLIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin
pubmed doi rcsb
molecule keywords IOTA TOXIN COMPONENT IA
molecule tags Toxin
total genus 133
structure length 411
sequence length 411
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1giqA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1giqA01
1J7NA 1OJQA 1OJZA 1GIQA 5BWMB 1PWPA 1JKYA 3BW8A 4PKRA 2C8HA 4PKSA 4PKWA 1OG4A 1UZIA 1GZEA 4DV8A 1G24A 3BUZA 2GWMA 4H0YA 5H03A 2C89A 2WN7A 4H03A 1YQYA 4PKVA 1OG1A 1OG3A 4PKUA 2A78B 4GY2A 1GY0A 2WN5A 5DZQA 2C8GA 1PWUA 1R45A 2WN6A 1R4BA 4XM6A 4FXQA 2C8BX 1PWQA 2C8DA 4H0VA 2C8FE 4XSHB 2J3XA 5H04A 4XM8A 5D1TA 1ZXVA 1PWVA 5GTTA 1GZFA 2BOVB 1PWWA 1GXYA 2A9KB 4ELNA 2WN8A 2J3ZA 4TR5A 5D1SA 2C8AA 3NTSA 1GXZA 4FMLA 4PKTA 4FK7A 4GF1A 1QS2A 4XM7A 4WF6A 1QS1A 2C8CA 4H0TA 2WN4A 4PKQA 2J3VA 2C8EE 3U0JA 4XSGB 1GIRA 4H0XA 5D1UA 2GWLA
chains in the Genus database with same CATH superfamily
1J7NA 1OJQA 1OJZA 1GIQA 5BWMB 1PWPA 1JKYA 3BW8A 4PKRA 2C8HA 4PKSA 4PKWA 1OG4A 1UZIA 1GZEA 4DV8A 1G24A 3BUZA 2GWMA 4H0YA 5H03A 2C89A 2WN7A 4H03A 1YQYA 4PKVA 1OG1A 1OG3A 4PKUA 2A78B 4GY2A 1GY0A 2WN5A 5DZQA 2C8GA 1PWUA 1R45A 2WN6A 1R4BA 4XM6A 4FXQA 2C8BX 1PWQA 2C8DA 4H0VA 2C8FE 4XSHB 2J3XA 5H04A 4XM8A 5D1TA 1ZXVA 1PWVA 5GTTA 1GZFA 2BOVB 1PWWA 1GXYA 2A9KB 4ELNA 2WN8A 2J3ZA 4TR5A 5D1SA 2C8AA 3NTSA 1GXZA 4FMLA 4PKTA 4FK7A 4GF1A 1QS2A 4XM7A 4WF6A 1QS1A 2C8CA 4H0TA 2WN4A 4PKQA 2J3VA 2C8EE 3U0JA 4XSGB 1GIRA 4H0XA 5D1UA 2GWLA
chains in the Genus database with same CATH topology
1J7NA 1OJQA 1OJZA 1GIQA 5BWMB 1PWPA 1JKYA 3BW8A 4PKRA 2C8HA 4PKSA 4PKWA 1OG4A 1UZIA 1GZEA 4DV8A 1G24A 3BUZA 2GWMA 4H0YA 5H03A 2C89A 2WN7A 4H03A 1YQYA 4PKVA 1OG1A 1OG3A 4PKUA 2A78B 4GY2A 1GY0A 2WN5A 5DZQA 2C8GA 1PWUA 1R45A 2WN6A 1R4BA 4XM6A 4FXQA 2C8BX 1PWQA 2C8DA 4H0VA 2C8FE 4XSHB 2J3XA 5H04A 4XM8A 5D1TA 1ZXVA 1PWVA 5GTTA 1GZFA 2BOVB 1PWWA 1GXYA 2A9KB 4ELNA 2WN8A 2J3ZA 4TR5A 5D1SA 2C8AA 3NTSA 1GXZA 4FMLA 4PKTA 4FK7A 4GF1A 1QS2A 4XM7A 4WF6A 1QS1A 2C8CA 4H0TA 2WN4A 4PKQA 2J3VA 2C8EE 3U0JA 4XSGB 1GIRA 4H0XA 5D1UA 2GWLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J7N A;  1OJQ A;  1OJZ A;  1GIQ A;  5BWM B;  1PWP A;  1JKY A;  3BW8 A;  4PKR A;  2C8H A;  4PKS A;  4PKW A;  1OG4 A;  1UZI A;  1GZE A;  4DV8 A;  1G24 A;  3BUZ A;  2GWM A;  4H0Y A;  5H03 A;  2C89 A;  2WN7 A;  4H03 A;  1YQY A;  4PKV A;  1OG1 A;  1OG3 A;  4PKU A;  2A78 B;  4GY2 A;  1GY0 A;  2WN5 A;  5DZQ A;  2C8G A;  1PWU A;  1R45 A;  2WN6 A;  1R4B A;  4XM6 A;  4FXQ A;  2C8B X;  1PWQ A;  2C8D A;  4H0V A;  2C8F E;  4XSH B;  2J3X A;  5H04 A;  4XM8 A;  5D1T A;  1ZXV A;  1PWV A;  5GTT A;  1GZF A;  2BOV B;  1PWW A;  1GXY A;  2A9K B;  4ELN A;  2WN8 A;  2J3Z A;  4TR5 A;  5D1S A;  2C8A A;  3NTS A;  1GXZ A;  4FML A;  4PKT A;  4FK7 A;  4GF1 A;  1QS2 A;  4XM7 A;  4WF6 A;  1QS1 A;  2C8C A;  4H0T A;  2WN4 A;  4PKQ A;  2J3V A;  2C8E E;  3U0J A;  4XSG B;  1GIR A;  4H0X A;  5D1U A;  2GWL A; 
#chains in the Genus database with same CATH topology
 1J7N A;  1OJQ A;  1OJZ A;  1GIQ A;  5BWM B;  1PWP A;  1JKY A;  3BW8 A;  4PKR A;  2C8H A;  4PKS A;  4PKW A;  1OG4 A;  1UZI A;  1GZE A;  4DV8 A;  1G24 A;  3BUZ A;  2GWM A;  4H0Y A;  5H03 A;  2C89 A;  2WN7 A;  4H03 A;  1YQY A;  4PKV A;  1OG1 A;  1OG3 A;  4PKU A;  2A78 B;  4GY2 A;  1GY0 A;  2WN5 A;  5DZQ A;  2C8G A;  1PWU A;  1R45 A;  2WN6 A;  1R4B A;  4XM6 A;  4FXQ A;  2C8B X;  1PWQ A;  2C8D A;  4H0V A;  2C8F E;  4XSH B;  2J3X A;  5H04 A;  4XM8 A;  5D1T A;  1ZXV A;  1PWV A;  5GTT A;  1GZF A;  2BOV B;  1PWW A;  1GXY A;  2A9K B;  4ELN A;  2WN8 A;  2J3Z A;  4TR5 A;  5D1S A;  2C8A A;  3NTS A;  1GXZ A;  4FML A;  4PKT A;  4FK7 A;  4GF1 A;  1QS2 A;  4XM7 A;  4WF6 A;  1QS1 A;  2C8C A;  4H0T A;  2WN4 A;  4PKQ A;  2J3V A;  2C8E E;  3U0J A;  4XSG B;  1GIR A;  4H0X A;  5D1U A;  2GWL A; 
#chains in the Genus database with same CATH homology
 1J7N A;  1OJQ A;  1OJZ A;  1GIQ A;  5BWM B;  1PWP A;  1JKY A;  3BW8 A;  4PKR A;  2C8H A;  4PKS A;  4PKW A;  1OG4 A;  1UZI A;  1GZE A;  4DV8 A;  1G24 A;  3BUZ A;  2GWM A;  4H0Y A;  5H03 A;  2C89 A;  2WN7 A;  4H03 A;  1YQY A;  4PKV A;  1OG1 A;  1OG3 A;  4PKU A;  2A78 B;  4GY2 A;  1GY0 A;  2WN5 A;  5DZQ A;  2C8G A;  1PWU A;  1R45 A;  2WN6 A;  1R4B A;  4XM6 A;  4FXQ A;  2C8B X;  1PWQ A;  2C8D A;  4H0V A;  2C8F E;  4XSH B;  2J3X A;  5H04 A;  4XM8 A;  5D1T A;  1ZXV A;  1PWV A;  5GTT A;  1GZF A;  2BOV B;  1PWW A;  1GXY A;  2A9K B;  4ELN A;  2WN8 A;  2J3Z A;  4TR5 A;  5D1S A;  2C8A A;  3NTS A;  1GXZ A;  4FML A;  4PKT A;  4FK7 A;  4GF1 A;  1QS2 A;  4XM7 A;  4WF6 A;  1QS1 A;  2C8C A;  4H0T A;  2WN4 A;  4PKQ A;  2J3V A;  2C8E E;  3U0J A;  4XSG B;  1GIR A;  4H0X A;  5D1U A;  2GWL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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