1GIQA

Crystal structure of the enzymatic componet of iota-toxin from clostridium perfringens with nadh
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
411
structure length
411
Chain Sequence
IERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLPKNTGMLPYINSNDVKTLIEQDYSIKIDKIVRIVIEGKQYIKAEASIVNSLDFKDDVSKGDLWGKENYSDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDATLIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
publication title Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin
pubmed doi rcsb
molecule keywords IOTA TOXIN COMPONENT IA
total genus 133
structure length 411
sequence length 411
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1giqA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1giqA01
4ELNA 4XM6A 2C8CA 1PWUA 2WN7A 1G24A 2C8GA 4FXQA 3BUZA 4WF6A 5D1SA 5DZQA 5BWMB 1UZIA 2J3VA 2WN5A 5H04A 4GY2A 4XM8A 4H03A 5D1TA 4PKVA 1J7NA 1GIQA 4XSGB 4PKWA 4FMLA 3U0JA 2GWLA 1YQYA 2C89A 2WN4A 4FK7A 2C8FE 1PWPA 1PWWA 5D1UA 1OJZA 1GXZA 5H03A 1GZEA 1QS1A 2GWMA 1OG1A 2C8EE 3BW8A 2BOVB 4H0TA 4DV8A 3NTSA 1R4BA 4TR5A 4XSHB 5GTTA 2J3ZA 1PWVA 2A78B 2C8BX 4PKRA 1OG3A 1ZXVA 2J3XA 4PKUA 4XM7A 2C8AA 1GXYA 1QS2A 2A9KB 1OG4A 2WN6A 1JKYA 4PKSA 2WN8A 1GY0A 1GIRA 1R45A 4GF1A 4H0VA 4H0XA 4PKQA 1GZFA 4PKTA 1PWQA 2C8DA 4H0YA 2C8HA 1OJQA
chains in the Genus database with same CATH superfamily
4ELNA 4XM6A 2C8CA 1PWUA 2WN7A 1G24A 2C8GA 4FXQA 3BUZA 4WF6A 5D1SA 5DZQA 5BWMB 1UZIA 2J3VA 2WN5A 5H04A 4GY2A 4XM8A 4H03A 5D1TA 4PKVA 1J7NA 1GIQA 4XSGB 4PKWA 4FMLA 3U0JA 2GWLA 1YQYA 2C89A 2WN4A 4FK7A 2C8FE 1PWPA 1PWWA 5D1UA 1OJZA 1GXZA 5H03A 1GZEA 1QS1A 2GWMA 1OG1A 2C8EE 3BW8A 2BOVB 4H0TA 4DV8A 3NTSA 1R4BA 4TR5A 4XSHB 5GTTA 2J3ZA 1PWVA 2A78B 2C8BX 4PKRA 1OG3A 1ZXVA 2J3XA 4PKUA 4XM7A 2C8AA 1GXYA 1QS2A 2A9KB 1OG4A 2WN6A 1JKYA 4PKSA 2WN8A 1GY0A 1GIRA 1R45A 4GF1A 4H0VA 4H0XA 4PKQA 1GZFA 4PKTA 1PWQA 2C8DA 4H0YA 2C8HA 1OJQA
chains in the Genus database with same CATH topology
4ELNA 4XM6A 2C8CA 1PWUA 2WN7A 1G24A 2C8GA 4FXQA 3BUZA 4WF6A 5D1SA 5DZQA 5BWMB 1UZIA 2J3VA 2WN5A 5H04A 4GY2A 4XM8A 4H03A 5D1TA 4PKVA 1J7NA 1GIQA 4XSGB 4PKWA 4FMLA 3U0JA 2GWLA 1YQYA 2C89A 2WN4A 4FK7A 2C8FE 1PWPA 1PWWA 5D1UA 1OJZA 1GXZA 5H03A 1GZEA 1QS1A 2GWMA 1OG1A 2C8EE 3BW8A 2BOVB 4H0TA 4DV8A 3NTSA 1R4BA 4TR5A 4XSHB 5GTTA 2J3ZA 1PWVA 2A78B 2C8BX 4PKRA 1OG3A 1ZXVA 2J3XA 4PKUA 4XM7A 2C8AA 1GXYA 1QS2A 2A9KB 1OG4A 2WN6A 1JKYA 4PKSA 2WN8A 1GY0A 1GIRA 1R45A 4GF1A 4H0VA 4H0XA 4PKQA 1GZFA 4PKTA 1PWQA 2C8DA 4H0YA 2C8HA 1OJQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ELN A;  4XM6 A;  2C8C A;  1PWU A;  2WN7 A;  1G24 A;  2C8G A;  4FXQ A;  3BUZ A;  4WF6 A;  5D1S A;  5DZQ A;  5BWM B;  1UZI A;  2J3V A;  2WN5 A;  5H04 A;  4GY2 A;  4XM8 A;  4H03 A;  5D1T A;  4PKV A;  1J7N A;  1GIQ A;  4XSG B;  4PKW A;  4FML A;  3U0J A;  2GWL A;  1YQY A;  2C89 A;  2WN4 A;  4FK7 A;  2C8F E;  1PWP A;  1PWW A;  5D1U A;  1OJZ A;  1GXZ A;  5H03 A;  1GZE A;  1QS1 A;  2GWM A;  1OG1 A;  2C8E E;  3BW8 A;  2BOV B;  4H0T A;  4DV8 A;  3NTS A;  1R4B A;  4TR5 A;  4XSH B;  5GTT A;  2J3Z A;  1PWV A;  2A78 B;  2C8B X;  4PKR A;  1OG3 A;  1ZXV A;  2J3X A;  4PKU A;  4XM7 A;  2C8A A;  1GXY A;  1QS2 A;  2A9K B;  1OG4 A;  2WN6 A;  1JKY A;  4PKS A;  2WN8 A;  1GY0 A;  1GIR A;  1R45 A;  4GF1 A;  4H0V A;  4H0X A;  4PKQ A;  1GZF A;  4PKT A;  1PWQ A;  2C8D A;  4H0Y A;  2C8H A;  1OJQ A; 
#chains in the Genus database with same CATH topology
 4ELN A;  4XM6 A;  2C8C A;  1PWU A;  2WN7 A;  1G24 A;  2C8G A;  4FXQ A;  3BUZ A;  4WF6 A;  5D1S A;  5DZQ A;  5BWM B;  1UZI A;  2J3V A;  2WN5 A;  5H04 A;  4GY2 A;  4XM8 A;  4H03 A;  5D1T A;  4PKV A;  1J7N A;  1GIQ A;  4XSG B;  4PKW A;  4FML A;  3U0J A;  2GWL A;  1YQY A;  2C89 A;  2WN4 A;  4FK7 A;  2C8F E;  1PWP A;  1PWW A;  5D1U A;  1OJZ A;  1GXZ A;  5H03 A;  1GZE A;  1QS1 A;  2GWM A;  1OG1 A;  2C8E E;  3BW8 A;  2BOV B;  4H0T A;  4DV8 A;  3NTS A;  1R4B A;  4TR5 A;  4XSH B;  5GTT A;  2J3Z A;  1PWV A;  2A78 B;  2C8B X;  4PKR A;  1OG3 A;  1ZXV A;  2J3X A;  4PKU A;  4XM7 A;  2C8A A;  1GXY A;  1QS2 A;  2A9K B;  1OG4 A;  2WN6 A;  1JKY A;  4PKS A;  2WN8 A;  1GY0 A;  1GIR A;  1R45 A;  4GF1 A;  4H0V A;  4H0X A;  4PKQ A;  1GZF A;  4PKT A;  1PWQ A;  2C8D A;  4H0Y A;  2C8H A;  1OJQ A; 
#chains in the Genus database with same CATH homology
 4ELN A;  4XM6 A;  2C8C A;  1PWU A;  2WN7 A;  1G24 A;  2C8G A;  4FXQ A;  3BUZ A;  4WF6 A;  5D1S A;  5DZQ A;  5BWM B;  1UZI A;  2J3V A;  2WN5 A;  5H04 A;  4GY2 A;  4XM8 A;  4H03 A;  5D1T A;  4PKV A;  1J7N A;  1GIQ A;  4XSG B;  4PKW A;  4FML A;  3U0J A;  2GWL A;  1YQY A;  2C89 A;  2WN4 A;  4FK7 A;  2C8F E;  1PWP A;  1PWW A;  5D1U A;  1OJZ A;  1GXZ A;  5H03 A;  1GZE A;  1QS1 A;  2GWM A;  1OG1 A;  2C8E E;  3BW8 A;  2BOV B;  4H0T A;  4DV8 A;  3NTS A;  1R4B A;  4TR5 A;  4XSH B;  5GTT A;  2J3Z A;  1PWV A;  2A78 B;  2C8B X;  4PKR A;  1OG3 A;  1ZXV A;  2J3X A;  4PKU A;  4XM7 A;  2C8A A;  1GXY A;  1QS2 A;  2A9K B;  1OG4 A;  2WN6 A;  1JKY A;  4PKS A;  2WN8 A;  1GY0 A;  1GIR A;  1R45 A;  4GF1 A;  4H0V A;  4H0X A;  4PKQ A;  1GZF A;  4PKT A;  1PWQ A;  2C8D A;  4H0Y A;  2C8H A;  1OJQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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