1GJHA

Human bcl-2, isoform 2
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
164
structure length
164
Chain Sequence
HAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords PROTEIN (APOPTOSIS REGULATOR BCL-2 WITH PUTATIVE FLEXIBLE LO
publication title Solution structure of the antiapoptotic protein bcl-2.
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 164
sequence length 164
ec nomenclature
pdb deposition date 2001-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
A PF02180 BH4 Bcl-2 homology region 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 1gjhA00
2JCNA 4BPJA 2VOHA 3BL2A 3IIHA 1R2IA 5FC4A 1AF3A 2PQKA 1GJHA 4ZIFA 1YSIA 2NLAA 1Q59A 4MI8A 2RODA 1YSGA 2K7WA 1MK3A 5C6HA 2XA0A 3D7VA 4BDUA 4S0PA 4ZBFA 4G35A 2VM6A 3QBRA 4YJ4A 1YSWA 1MAZA 4WMRA 4BPIA 3WIYA 2MEJA 1R2GA 3MQPA 4ZEQA 2O2FA 4ZIGA 2W3LA 4U2UA 1R2EA 1ZY3A 3IO9A 1BXLA 2ME8A 1OHUA 3ILCA 4ZBIA 4ZIEA 3IHEA 3IHCA 3KZ0A 2V6QA 2IMSA 2IMTA 5KTGA 4ZIHA 3KJ2A 2VOGA 4QVXA 1YSNA 2NL9A 5IF4A 3IHDA 4BD2A 1G5JA 1R2HA 3KJ1A 4U2VA 1F16A 2O2NA 2WH6A 2BZWA 3DVUA 2LR1A 4OQ5A 5FMIA 2VOFA 1R2DA 1LXLA 1WSXA 2B48A 2O21A 4S0OA 4B4SA 4HW2A 1PQ1A 3PK1A 1K3KA 5IEZA 3I1HA 1O0LA 2A5YA 4BD6A 2MHSA 2KUAA 1PQ0A 4HW3A 2JM6B 2O2MA 3IIGA 2VOIA 5FDOA 4K5BC 2YV6A 5C3FA 2KBWA 4QNQA 1TY4A 2M5BA 2O22A 4BD8A 4YK9A 4ZIIA 1G5MA 2BIDA 4BD7A 5JSBA 2XPXA 3CVAX 5FDRA 4OYDA 3MK8A 3WIXA 4OQ6A 3KJ0A 5KU9A 2ABOA 4HW4A 2ROCA 1DDBA
chains in the Genus database with same CATH superfamily
2JCNA 2VVYA 4BPJA 2VOHA 3BL2A 3IIHA 1R2IA 5FC4A 1AF3A 2PQKA 1GJHA 2VVXA 4ZIFA 1YSIA 2I39A 2NLAA 1Q59A 4MI8A 2RODA 1YSGA 4BBBA 2K7WA 1MK3A 4UF2A 5C6HA 2XA0A 3D7VA 4BDUA 4S0PA 4ZBFA 4G35A 2JBYA 2VM6A 3QBRA 4YJ4A 1YSWA 1MAZA 4WMRA 4BPIA 3WIYA 2MEJA 1R2GA 3MQPA 4ZEQA 4BBCA 2O2FA 4ZIGA 2W3LA 4U2UA 1R2EA 1ZY3A 3IO9A 1BXLA 2ME8A 1OHUA 3ILCA 4ZBIA 4ZIEA 3IHEA 3IHCA 3KZ0A 2V6QA 2IMSA 2IMTA 5KTGA 4ZIHA 3KJ2A 2VOGA 4QVXA 1YSNA 2NL9A 5IF4A 3IHDA 4BD2A 1G5JA 1R2HA 3KJ1A 4U2VA 1F16A 2O2NA 2WH6A 2BZWA 3DVUA 2LR1A 4OQ5A 4UF3A 5FMIA 4UF1A 2VOFA 1R2DA 1LXLA 1WSXA 2O42A 2B48A 2O21A 4S0OA 4B4SA 4HW2A 1PQ1A 3PK1A 1K3KA 5IEZA 3I1HA 1O0LA 2A5YA 4BD6A 2MHSA 2KUAA 2JBXA 1PQ0A 4HW3A 2JM6B 4D2LA 2O2MA 4LQKA 3IIGA 3JRVA 2VOIA 5FDOA 4K5BC 2YV6A 5C3FA 2KBWA 4QNQA 1TY4A 2M5BA 2O22A 4BD8A 4YK9A 4D2MA 4ZIIA 1G5MA 2BIDA 2K36A 2VTYA 4BD7A 5JSBA 2XPXA 3CVAX 4M0SA 5FDRA 4OYDA 3MK8A 3WIXA 4BBDA 4OQ6A 3KJ0A 5KU9A 2ABOA 4HW4A 2VVWA 2ROCA 2UXEA 1DDBA
chains in the Genus database with same CATH topology
2JCNA 4BPJA 2VOHA 3BL2A 3IIHA 1R2IA 5FC4A 1AF3A 2PQKA 1GJHA 4ZIFA 1YSIA 2NLAA 1Q59A 4MI8A 2RODA 1YSGA 2K7WA 1MK3A 5C6HA 2XA0A 3D7VA 4BDUA 4S0PA 4ZBFA 4G35A 2VM6A 3QBRA 4YJ4A 1YSWA 1MAZA 4WMRA 4BPIA 3WIYA 2MEJA 1R2GA 3MQPA 4ZEQA 2O2FA 4ZIGA 2W3LA 4U2UA 1R2EA 1ZY3A 3IO9A 1BXLA 2ME8A 1OHUA 3ILCA 4ZBIA 4ZIEA 3IHEA 3IHCA 3KZ0A 2V6QA 2IMSA 2IMTA 5KTGA 4ZIHA 3KJ2A 2VOGA 4QVXA 1YSNA 2NL9A 5IF4A 3IHDA 4BD2A 1G5JA 1R2HA 3KJ1A 4U2VA 1F16A 2O2NA 2WH6A 2BZWA 3DVUA 2LR1A 4OQ5A 5FMIA 2VOFA 1R2DA 1LXLA 1WSXA 2B48A 2O21A 4S0OA 4B4SA 4HW2A 1PQ1A 3PK1A 1K3KA 5IEZA 3I1HA 1O0LA 2A5YA 4BD6A 2MHSA 2KUAA 1PQ0A 4HW3A 2JM6B 2O2MA 3IIGA 2VOIA 5FDOA 4K5BC 2YV6A 5C3FA 2KBWA 4QNQA 1TY4A 2M5BA 2O22A 4BD8A 4YK9A 4ZIIA 1G5MA 2BIDA 4BD7A 5JSBA 2XPXA 3CVAX 5FDRA 4OYDA 3MK8A 3WIXA 4OQ6A 3KJ0A 5KU9A 2ABOA 4HW4A 2ROCA 1DDBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JCN A;  4BPJ A;  2VOH A;  3BL2 A;  3IIH A;  1R2I A;  5FC4 A;  1AF3 A;  2PQK A;  1GJH A;  4ZIF A;  1YSI A;  2NLA A;  1Q59 A;  4MI8 A;  2ROD A;  1YSG A;  2K7W A;  1MK3 A;  5C6H A;  2XA0 A;  3D7V A;  4BDU A;  4S0P A;  4ZBF A;  4G35 A;  2VM6 A;  3QBR A;  4YJ4 A;  1YSW A;  1MAZ A;  4WMR A;  4BPI A;  3WIY A;  2MEJ A;  1R2G A;  3MQP A;  4ZEQ A;  2O2F A;  4ZIG A;  2W3L A;  4U2U A;  1R2E A;  1ZY3 A;  3IO9 A;  1BXL A;  2ME8 A;  1OHU A;  3ILC A;  4ZBI A;  4ZIE A;  3IHE A;  3IHC A;  3KZ0 A;  2V6Q A;  2IMS A;  2IMT A;  5KTG A;  4ZIH A;  3KJ2 A;  2VOG A;  4QVX A;  1YSN A;  2NL9 A;  5IF4 A;  3IHD A;  4BD2 A;  1G5J A;  1R2H A;  3KJ1 A;  4U2V A;  1F16 A;  2O2N A;  2WH6 A;  2BZW A;  3DVU A;  2LR1 A;  4OQ5 A;  5FMI A;  2VOF A;  1R2D A;  1LXL A;  1WSX A;  2B48 A;  2O21 A;  4S0O A;  4B4S A;  4HW2 A;  1PQ1 A;  3PK1 A;  1K3K A;  5IEZ A;  3I1H A;  1O0L A;  2A5Y A;  4BD6 A;  2MHS A;  2KUA A;  1PQ0 A;  4HW3 A;  2JM6 B;  2O2M A;  3IIG A;  2VOI A;  5FDO A;  4K5B C;  2YV6 A;  5C3F A;  2KBW A;  4QNQ A;  1TY4 A;  2M5B A;  2O22 A;  4BD8 A;  4YK9 A;  4ZII A;  1G5M A;  2BID A;  4BD7 A;  5JSB A;  2XPX A;  3CVA X;  5FDR A;  4OYD A;  3MK8 A;  3WIX A;  4OQ6 A;  3KJ0 A;  5KU9 A;  2ABO A;  4HW4 A;  2ROC A;  1DDB A; 
#chains in the Genus database with same CATH topology
 2JCN A;  2VVY A;  4BPJ A;  2VOH A;  3BL2 A;  3IIH A;  1R2I A;  5FC4 A;  1AF3 A;  2PQK A;  1GJH A;  2VVX A;  4ZIF A;  1YSI A;  2I39 A;  2NLA A;  1Q59 A;  4MI8 A;  2ROD A;  1YSG A;  4BBB A;  2K7W A;  1MK3 A;  4UF2 A;  5C6H A;  2XA0 A;  3D7V A;  4BDU A;  4S0P A;  4ZBF A;  4G35 A;  2JBY A;  2VM6 A;  3QBR A;  4YJ4 A;  1YSW A;  1MAZ A;  4WMR A;  4BPI A;  3WIY A;  2MEJ A;  1R2G A;  3MQP A;  4ZEQ A;  4BBC A;  2O2F A;  4ZIG A;  2W3L A;  4U2U A;  1R2E A;  1ZY3 A;  3IO9 A;  1BXL A;  2ME8 A;  1OHU A;  3ILC A;  4ZBI A;  4ZIE A;  3IHE A;  3IHC A;  3KZ0 A;  2V6Q A;  2IMS A;  2IMT A;  5KTG A;  4ZIH A;  3KJ2 A;  2VOG A;  4QVX A;  1YSN A;  2NL9 A;  5IF4 A;  3IHD A;  4BD2 A;  1G5J A;  1R2H A;  3KJ1 A;  4U2V A;  1F16 A;  2O2N A;  2WH6 A;  2BZW A;  3DVU A;  2LR1 A;  4OQ5 A;  4UF3 A;  5FMI A;  4UF1 A;  2VOF A;  1R2D A;  1LXL A;  1WSX A;  2O42 A;  2B48 A;  2O21 A;  4S0O A;  4B4S A;  4HW2 A;  1PQ1 A;  3PK1 A;  1K3K A;  5IEZ A;  3I1H A;  1O0L A;  2A5Y A;  4BD6 A;  2MHS A;  2KUA A;  2JBX A;  1PQ0 A;  4HW3 A;  2JM6 B;  4D2L A;  2O2M A;  4LQK A;  3IIG A;  3JRV A;  2VOI A;  5FDO A;  4K5B C;  2YV6 A;  5C3F A;  2KBW A;  4QNQ A;  1TY4 A;  2M5B A;  2O22 A;  4BD8 A;  4YK9 A;  4D2M A;  4ZII A;  1G5M A;  2BID A;  2K36 A;  2VTY A;  4BD7 A;  5JSB A;  2XPX A;  3CVA X;  4M0S A;  5FDR A;  4OYD A;  3MK8 A;  3WIX A;  4BBD A;  4OQ6 A;  3KJ0 A;  5KU9 A;  2ABO A;  4HW4 A;  2VVW A;  2ROC A;  2UXE A;  1DDB A; 
#chains in the Genus database with same CATH homology
 2JCN A;  4BPJ A;  2VOH A;  3BL2 A;  3IIH A;  1R2I A;  5FC4 A;  1AF3 A;  2PQK A;  1GJH A;  4ZIF A;  1YSI A;  2NLA A;  1Q59 A;  4MI8 A;  2ROD A;  1YSG A;  2K7W A;  1MK3 A;  5C6H A;  2XA0 A;  3D7V A;  4BDU A;  4S0P A;  4ZBF A;  4G35 A;  2VM6 A;  3QBR A;  4YJ4 A;  1YSW A;  1MAZ A;  4WMR A;  4BPI A;  3WIY A;  2MEJ A;  1R2G A;  3MQP A;  4ZEQ A;  2O2F A;  4ZIG A;  2W3L A;  4U2U A;  1R2E A;  1ZY3 A;  3IO9 A;  1BXL A;  2ME8 A;  1OHU A;  3ILC A;  4ZBI A;  4ZIE A;  3IHE A;  3IHC A;  3KZ0 A;  2V6Q A;  2IMS A;  2IMT A;  5KTG A;  4ZIH A;  3KJ2 A;  2VOG A;  4QVX A;  1YSN A;  2NL9 A;  5IF4 A;  3IHD A;  4BD2 A;  1G5J A;  1R2H A;  3KJ1 A;  4U2V A;  1F16 A;  2O2N A;  2WH6 A;  2BZW A;  3DVU A;  2LR1 A;  4OQ5 A;  5FMI A;  2VOF A;  1R2D A;  1LXL A;  1WSX A;  2B48 A;  2O21 A;  4S0O A;  4B4S A;  4HW2 A;  1PQ1 A;  3PK1 A;  1K3K A;  5IEZ A;  3I1H A;  1O0L A;  2A5Y A;  4BD6 A;  2MHS A;  2KUA A;  1PQ0 A;  4HW3 A;  2JM6 B;  2O2M A;  3IIG A;  2VOI A;  5FDO A;  4K5B C;  2YV6 A;  5C3F A;  2KBW A;  4QNQ A;  1TY4 A;  2M5B A;  2O22 A;  4BD8 A;  4YK9 A;  4ZII A;  1G5M A;  2BID A;  4BD7 A;  5JSB A;  2XPX A;  3CVA X;  5FDR A;  4OYD A;  3MK8 A;  3WIX A;  4OQ6 A;  3KJ0 A;  5KU9 A;  2ABO A;  4HW4 A;  2ROC A;  1DDB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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