1GJJA

N-terminal constant region of the nuclear envelope protein lap2
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
Knots found
sequence length
153
structure length
93
Chain Sequence
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords LAP2
publication title Solution structure of the constant region of nuclear envelope protein LAP2 reveals two LEM-domain structures: one binds BAF and the other binds DNA.
pubmed doi rcsb
source organism Homo sapiens
total genus 42
structure length 93
sequence length 153
other databases KnotProt 2.0: Artifct S 7.4 51 +3.
ec nomenclature
pdb deposition date 2001-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03020 LEM LEM domain
A PF08198 Thymopoietin Thymopoietin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.40 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 1gjjA00
1H9EA 1GJJA 1JEIA 1H9FA 2ODGC 2ODCI
chains in the Genus database with same CATH superfamily
1V66A 5CIUA 1ZS9A 1GJJA 2G80A 2KFVA 1H9FA 2QNFA 2MPHA 4BITA 1Y02A 3FLGA 2QNCA 1GKUB 2W51A 1H1JS 1GL9B 1JJRA 1A62A 1JEQA 2KVEA 2KVDA 3LLRA 1EN7A 2KW9A 2JVWA 2ODCI 2LD7A 1ZBHA 2RNNA 2HJQA 1JEIA 1E7LA 2WQGA 1H9EA 2RNOA 1A8VA 2KVUA 4UZWA 1KHCA 1A63A 1E7DA 1YNSA 2ODGC 2A8VA 3L0OA 2LC3A 2DK4A 3QKJA
chains in the Genus database with same CATH topology
1ZS9A 1GJJA 2G80A 2KFVA 1H9FA 2QNFA 2MPHA 1Y02A 2QNCA 1GKUB 2W51A 1GL9B 1A62A 1EN7A 2ODCI 2LD7A 2HJQA 1JEIA 1E7LA 1H9EA 1A8VA 1A63A 1E7DA 1YNSA 2ODGC 2A8VA 3L0OA 2LC3A 2DK4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H9E A;  1GJJ A;  1JEI A;  1H9F A;  2ODG C;  2ODC I; 
#chains in the Genus database with same CATH topology
 1V66 A;  5CIU A;  1ZS9 A;  1GJJ A;  2G80 A;  2KFV A;  1H9F A;  2QNF A;  2MPH A;  4BIT A;  1Y02 A;  3FLG A;  2QNC A;  1GKU B;  2W51 A;  1H1J S;  1GL9 B;  1JJR A;  1A62 A;  1JEQ A;  2KVE A;  2KVD A;  3LLR A;  1EN7 A;  2KW9 A;  2JVW A;  2ODC I;  2LD7 A;  1ZBH A;  2RNN A;  2HJQ A;  1JEI A;  1E7L A;  2WQG A;  1H9E A;  2RNO A;  1A8V A;  2KVU A;  4UZW A;  1KHC A;  1A63 A;  1E7D A;  1YNS A;  2ODG C;  2A8V A;  3L0O A;  2LC3 A;  2DK4 A;  3QKJ A; 
#chains in the Genus database with same CATH homology
 1ZS9 A;  1GJJ A;  2G80 A;  2KFV A;  1H9F A;  2QNF A;  2MPH A;  1Y02 A;  2QNC A;  1GKU B;  2W51 A;  1GL9 B;  1A62 A;  1EN7 A;  2ODC I;  2LD7 A;  2HJQ A;  1JEI A;  1E7L A;  1H9E A;  1A8V A;  1A63 A;  1E7D A;  1YNS A;  2ODG C;  2A8V A;  3L0O A;  2LC3 A;  2DK4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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