1GLDF

Cation promoted association (cpa) of a regulatory and target protein is controlled by phosphorylation
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
168
structure length
161
Chain Sequence
GLFDKLKSLVSTIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Phosphotransferase
molecule keywords GLUCOSE-SPECIFIC PROTEIN IIIGlc
publication title Cation-promoted association of a regulatory and target protein is controlled by protein phosphorylation.
pubmed doi rcsb
source organism Escherichia coli
total genus 29
structure length 161
sequence length 168
ec nomenclature
pdb deposition date 1994-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.70.10 Mainly Beta Distorted Sandwich Glucose Permease (Domain IIA) Glucose Permease (Domain IIA) 1gldF00
1O2FA 3NYYA 4LXCA 2F3GA 3OURB 4JBWM 5B0HA 1F3ZA 1GLBF 4QP5A 5KVPA 4RNZA 3UZ0B 1GLAF 3SLUA 2B13A 1GLDF 2B44A 4BH5A 3TUFB 3IT7A 1GGRA 3IT5A 2GU1A 4RNYA 4ZYBA 1GLCF 1GLEF 4QPBA 2B0PA 1QWYA 1GPRA 1F3GA 2MP0B 3CSQA 1AX3A 2HSIA 2GPRA
chains in the Genus database with same CATH superfamily
1O2FA 3NYYA 4LXCA 2F3GA 3OURB 4JBWM 5B0HA 1F3ZA 1GLBF 4QP5A 5KVPA 4RNZA 3UZ0B 1GLAF 3SLUA 2B13A 1GLDF 2B44A 4BH5A 3TUFB 3IT7A 1GGRA 3IT5A 2GU1A 4RNYA 4ZYBA 1GLCF 1GLEF 4QPBA 2B0PA 1QWYA 1GPRA 1F3GA 2MP0B 3CSQA 1AX3A 2HSIA 2GPRA
chains in the Genus database with same CATH topology
1O2FA 3NYYA 4LXCA 2F3GA 3OURB 4JBWM 5B0HA 1F3ZA 1GLBF 4QP5A 5KVPA 4RNZA 3UZ0B 1GLAF 3SLUA 2B13A 1GLDF 2B44A 4BH5A 3TUFB 3IT7A 1GGRA 3IT5A 2GU1A 4RNYA 4ZYBA 1GLCF 1GLEF 4QPBA 2B0PA 1QWYA 1GPRA 1F3GA 2MP0B 3CSQA 1AX3A 2HSIA 2GPRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O2F A;  3NYY A;  4LXC A;  2F3G A;  3OUR B;  4JBW M;  5B0H A;  1F3Z A;  1GLB F;  4QP5 A;  5KVP A;  4RNZ A;  3UZ0 B;  1GLA F;  3SLU A;  2B13 A;  1GLD F;  2B44 A;  4BH5 A;  3TUF B;  3IT7 A;  1GGR A;  3IT5 A;  2GU1 A;  4RNY A;  4ZYB A;  1GLC F;  1GLE F;  4QPB A;  2B0P A;  1QWY A;  1GPR A;  1F3G A;  2MP0 B;  3CSQ A;  1AX3 A;  2HSI A;  2GPR A; 
#chains in the Genus database with same CATH topology
 1O2F A;  3NYY A;  4LXC A;  2F3G A;  3OUR B;  4JBW M;  5B0H A;  1F3Z A;  1GLB F;  4QP5 A;  5KVP A;  4RNZ A;  3UZ0 B;  1GLA F;  3SLU A;  2B13 A;  1GLD F;  2B44 A;  4BH5 A;  3TUF B;  3IT7 A;  1GGR A;  3IT5 A;  2GU1 A;  4RNY A;  4ZYB A;  1GLC F;  1GLE F;  4QPB A;  2B0P A;  1QWY A;  1GPR A;  1F3G A;  2MP0 B;  3CSQ A;  1AX3 A;  2HSI A;  2GPR A; 
#chains in the Genus database with same CATH homology
 1O2F A;  3NYY A;  4LXC A;  2F3G A;  3OUR B;  4JBW M;  5B0H A;  1F3Z A;  1GLB F;  4QP5 A;  5KVP A;  4RNZ A;  3UZ0 B;  1GLA F;  3SLU A;  2B13 A;  1GLD F;  2B44 A;  4BH5 A;  3TUF B;  3IT7 A;  1GGR A;  3IT5 A;  2GU1 A;  4RNY A;  4ZYB A;  1GLC F;  1GLE F;  4QPB A;  2B0P A;  1QWY A;  1GPR A;  1F3G A;  2MP0 B;  3CSQ A;  1AX3 A;  2HSI A;  2GPR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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