1GP2G

G protein heterotrimer gi_alpha_1 beta_1 gamma_2 with gdp bound
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
54
structure length
54
Chain Sequence
SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Complex (gtp-binding/transducer)
molecule keywords G PROTEIN GI ALPHA 1
publication title The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 13
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1996-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00631 G-gamma GGL domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.260.10 Few Secondary Structures Irregular G Protein Gi Gamma 2 Transducin (heterotrimeric G protein), gamma chain 1gp2G00
2BCJG 1B9YB 4MK0G 1A0RG 5KDOG 1OMWG 1GP2G 1GG2G 1XHMB 5HE3G 3SN6G 4PNKG 3V5WG 3AH8G 1B9XB 3KRWG 2TRCG 5HE2G 1GOTG 5TDHG 5HE1G 4KFMG 2PBIA 3PVWG 3KRXG 1TBGE 3PVUG 3PSCG 3CIKG 5HE0G
chains in the Genus database with same CATH superfamily
2BCJG 1B9YB 4MK0G 1A0RG 5KDOG 1OMWG 1GP2G 1GG2G 1XHMB 5HE3G 3SN6G 4PNKG 1HFES 3V5WG 3AH8G 1B9XB 3KRWG 2TRCG 5HE2G 1GOTG 5TDHG 5HE1G 4KFMG 2PBIA 3PVWG 3KRXG 1TBGE 1IOJA 3PVUG 3PSCG 3CIKG 5HE0G
chains in the Genus database with same CATH topology
2BCJG 1B9YB 4MK0G 1A0RG 5KDOG 1OMWG 1GP2G 1GG2G 1XHMB 5HE3G 3SN6G 4PNKG 3V5WG 3AH8G 1B9XB 3KRWG 2TRCG 5HE2G 1GOTG 5TDHG 5HE1G 4KFMG 2PBIA 3PVWG 3KRXG 1TBGE 3PVUG 3PSCG 3CIKG 5HE0G
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2BCJ G;  1B9Y B;  4MK0 G;  1A0R G;  5KDO G;  1OMW G;  1GP2 G;  1GG2 G;  1XHM B;  5HE3 G;  3SN6 G;  4PNK G;  3V5W G;  3AH8 G;  1B9X B;  3KRW G;  2TRC G;  5HE2 G;  1GOT G;  5TDH G;  5HE1 G;  4KFM G;  2PBI A;  3PVW G;  3KRX G;  1TBG E;  3PVU G;  3PSC G;  3CIK G;  5HE0 G; 
#chains in the Genus database with same CATH topology
 2BCJ G;  1B9Y B;  4MK0 G;  1A0R G;  5KDO G;  1OMW G;  1GP2 G;  1GG2 G;  1XHM B;  5HE3 G;  3SN6 G;  4PNK G;  1HFE S;  3V5W G;  3AH8 G;  1B9X B;  3KRW G;  2TRC G;  5HE2 G;  1GOT G;  5TDH G;  5HE1 G;  4KFM G;  2PBI A;  3PVW G;  3KRX G;  1TBG E;  1IOJ A;  3PVU G;  3PSC G;  3CIK G;  5HE0 G; 
#chains in the Genus database with same CATH homology
 2BCJ G;  1B9Y B;  4MK0 G;  1A0R G;  5KDO G;  1OMW G;  1GP2 G;  1GG2 G;  1XHM B;  5HE3 G;  3SN6 G;  4PNK G;  3V5W G;  3AH8 G;  1B9X B;  3KRW G;  2TRC G;  5HE2 G;  1GOT G;  5TDH G;  5HE1 G;  4KFM G;  2PBI A;  3PVW G;  3KRX G;  1TBG E;  3PVU G;  3PSC G;  3CIK G;  5HE0 G;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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