1GP2G

G protein heterotrimer gi_alpha_1 beta_1 gamma_2 with gdp bound
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
54
structure length
54
Chain Sequence
SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2.
pubmed doi rcsb
molecule tags Complex (gtp-binding/transducer)
source organism Rattus norvegicus
molecule keywords G PROTEIN GI ALPHA 1
total genus 13
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1996-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00631 G-gamma GGL domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.260.10 Few Secondary Structures Irregular G Protein Gi Gamma 2 Transducin (heterotrimeric G protein), gamma chain 1gp2G00
5HE1G 3CIKG 2PBIA 4MK0G 5HE0G 3SN6G 3PVUG 4KFMG 1XHMB 1TBGE 1OMWG 3PVWG 1GOTG 3KRXG 1GG2G 4PNKG 1B9XB 2BCJG 5TDHG 3AH8G 1GP2G 1B9YB 3V5WG 3KRWG 5KDOG 2TRCG 3PSCG 5HE3G 1A0RG 5HE2G
chains in the Genus database with same CATH superfamily
5HE1G 3CIKG 2PBIA 4MK0G 5HE0G 3SN6G 3PVUG 4KFMG 1XHMB 1TBGE 1IOJA 1OMWG 3PVWG 1GOTG 3KRXG 1GG2G 4PNKG 1B9XB 2BCJG 5TDHG 3AH8G 1GP2G 1HFES 1B9YB 3V5WG 3KRWG 5KDOG 2TRCG 3PSCG 5HE3G 1A0RG 5HE2G
chains in the Genus database with same CATH topology
5HE1G 3CIKG 2PBIA 4MK0G 5HE0G 3SN6G 3PVUG 4KFMG 1XHMB 1TBGE 1OMWG 3PVWG 1GOTG 3KRXG 1GG2G 4PNKG 1B9XB 2BCJG 5TDHG 3AH8G 1GP2G 1B9YB 3V5WG 3KRWG 5KDOG 2TRCG 3PSCG 5HE3G 1A0RG 5HE2G
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5HE1 G;  3CIK G;  2PBI A;  4MK0 G;  5HE0 G;  3SN6 G;  3PVU G;  4KFM G;  1XHM B;  1TBG E;  1OMW G;  3PVW G;  1GOT G;  3KRX G;  1GG2 G;  4PNK G;  1B9X B;  2BCJ G;  5TDH G;  3AH8 G;  1GP2 G;  1B9Y B;  3V5W G;  3KRW G;  5KDO G;  2TRC G;  3PSC G;  5HE3 G;  1A0R G;  5HE2 G; 
#chains in the Genus database with same CATH topology
 5HE1 G;  3CIK G;  2PBI A;  4MK0 G;  5HE0 G;  3SN6 G;  3PVU G;  4KFM G;  1XHM B;  1TBG E;  1IOJ A;  1OMW G;  3PVW G;  1GOT G;  3KRX G;  1GG2 G;  4PNK G;  1B9X B;  2BCJ G;  5TDH G;  3AH8 G;  1GP2 G;  1HFE S;  1B9Y B;  3V5W G;  3KRW G;  5KDO G;  2TRC G;  3PSC G;  5HE3 G;  1A0R G;  5HE2 G; 
#chains in the Genus database with same CATH homology
 5HE1 G;  3CIK G;  2PBI A;  4MK0 G;  5HE0 G;  3SN6 G;  3PVU G;  4KFM G;  1XHM B;  1TBG E;  1OMW G;  3PVW G;  1GOT G;  3KRX G;  1GG2 G;  4PNK G;  1B9X B;  2BCJ G;  5TDH G;  3AH8 G;  1GP2 G;  1B9Y B;  3V5W G;  3KRW G;  5KDO G;  2TRC G;  3PSC G;  5HE3 G;  1A0R G;  5HE2 G;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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