1GPRA

Refined crystal structure of iia domain of the glucose permease of bacillus subtilis at 1.9 angstroms resolution
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
158
structure length
158
Chain Sequence
EPLQNEIGEEVFVSPITGEIHPITDVPDQVFSGKMMGDGFAILPSEGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASGSVNREQEDIVKIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Phosphotransferase
molecule keywords GLUCOSE PERMEASE
publication title An atomic model for protein-protein phosphoryl group transfer.
pubmed rcsb
source organism Bacillus subtilis
total genus 38
structure length 158
sequence length 158
ec nomenclature ec 2.7.1.69: Transferred entry: 2.7.1.191, 2.7.1.192, 2.7.1.193, 2.7.1.194, 2.7.1.195,
pdb deposition date 1991-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.70.10 Mainly Beta Distorted Sandwich Glucose Permease (Domain IIA) Glucose Permease (Domain IIA) 1gprA00
3IT7A 2GU1A 1AX3A 2B13A 3NYYA 3OURB 4ZYBA 3CSQA 1O2FA 1GLEF 1GPRA 3SLUA 1GLDF 5B0HA 2GPRA 1GGRA 3IT5A 2B44A 1QWYA 4LXCA 2F3GA 3UZ0B 4JBWM 2B0PA 1GLCF 2HSIA 4RNYA 4QPBA 1GLBF 2MP0B 4RNZA 3TUFB 1F3ZA 1GLAF 4QP5A 4BH5A 5KVPA 1F3GA
chains in the Genus database with same CATH superfamily
3IT7A 2GU1A 1AX3A 2B13A 3NYYA 3OURB 4ZYBA 3CSQA 1O2FA 1GLEF 1GPRA 3SLUA 1GLDF 5B0HA 2GPRA 1GGRA 3IT5A 2B44A 1QWYA 4LXCA 2F3GA 3UZ0B 4JBWM 2B0PA 1GLCF 2HSIA 4RNYA 4QPBA 1GLBF 2MP0B 4RNZA 3TUFB 1F3ZA 1GLAF 4QP5A 4BH5A 5KVPA 1F3GA
chains in the Genus database with same CATH topology
3IT7A 2GU1A 1AX3A 2B13A 3NYYA 3OURB 4ZYBA 3CSQA 1O2FA 1GLEF 1GPRA 3SLUA 1GLDF 5B0HA 2GPRA 1GGRA 3IT5A 2B44A 1QWYA 4LXCA 2F3GA 3UZ0B 4JBWM 2B0PA 1GLCF 2HSIA 4RNYA 4QPBA 1GLBF 2MP0B 4RNZA 3TUFB 1F3ZA 1GLAF 4QP5A 4BH5A 5KVPA 1F3GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IT7 A;  2GU1 A;  1AX3 A;  2B13 A;  3NYY A;  3OUR B;  4ZYB A;  3CSQ A;  1O2F A;  1GLE F;  1GPR A;  3SLU A;  1GLD F;  5B0H A;  2GPR A;  1GGR A;  3IT5 A;  2B44 A;  1QWY A;  4LXC A;  2F3G A;  3UZ0 B;  4JBW M;  2B0P A;  1GLC F;  2HSI A;  4RNY A;  4QPB A;  1GLB F;  2MP0 B;  4RNZ A;  3TUF B;  1F3Z A;  1GLA F;  4QP5 A;  4BH5 A;  5KVP A;  1F3G A; 
#chains in the Genus database with same CATH topology
 3IT7 A;  2GU1 A;  1AX3 A;  2B13 A;  3NYY A;  3OUR B;  4ZYB A;  3CSQ A;  1O2F A;  1GLE F;  1GPR A;  3SLU A;  1GLD F;  5B0H A;  2GPR A;  1GGR A;  3IT5 A;  2B44 A;  1QWY A;  4LXC A;  2F3G A;  3UZ0 B;  4JBW M;  2B0P A;  1GLC F;  2HSI A;  4RNY A;  4QPB A;  1GLB F;  2MP0 B;  4RNZ A;  3TUF B;  1F3Z A;  1GLA F;  4QP5 A;  4BH5 A;  5KVP A;  1F3G A; 
#chains in the Genus database with same CATH homology
 3IT7 A;  2GU1 A;  1AX3 A;  2B13 A;  3NYY A;  3OUR B;  4ZYB A;  3CSQ A;  1O2F A;  1GLE F;  1GPR A;  3SLU A;  1GLD F;  5B0H A;  2GPR A;  1GGR A;  3IT5 A;  2B44 A;  1QWY A;  4LXC A;  2F3G A;  3UZ0 B;  4JBW M;  2B0P A;  1GLC F;  2HSI A;  4RNY A;  4QPB A;  1GLB F;  2MP0 B;  4RNZ A;  3TUF B;  1F3Z A;  1GLA F;  4QP5 A;  4BH5 A;  5KVP A;  1F3G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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