1GU9A

Crystal structure of mycobacterium tuberculosis alkylperoxidase ahpd
Total Genus 62
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
172
structure length
172
Chain Sequence
EKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords ALKYLHYDROPEROXIDASE D
publication title The Crystal Structure of Mycobacterium Tuberculosis Alkylhydroperoxidase Ahpd, a Potential Target for Antitubercular Drug Design
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 62
structure length 172
sequence length 172
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2002-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1gu9A00
1KNCA 2OYOA 3D7IA 5DIKA 2IJCA 1VKEA 1GU9A 1ME5A 2CWQA 2PFXA 3C1LA 4G9QA 2AF7A 2QEUA 3LVYA 5DIPA 1P8CA 1LW1A 2O4DA 3BEYA 2GMYA 2OUWA 2PRRA 2Q0TA
chains in the Genus database with same CATH superfamily
1KNCA 2OYOA 3LK2A 3D7IA 5DIKA 5ADXK 2IJCA 3AA1A 1VKEA 1GU9A 1ME5A 2CWQA 2ES9A 2PFXA 3C1LA 2AF7A 3AA0A 2QEUA 3AAEA 2KZ7A 3LVYA 4G9QA 5DIPA 3LK3A 3LK41 1P8CA 3AAAA 1LW1A 1IZNA 2O4DA 2JN8A 5AFUK 3BEYA 3AA7A 2GMYA 2KXPA 2OUWA 2PRRA 4AKRA 2Q0TA 3AA6A
chains in the Genus database with same CATH topology
1KNCA 2OYOA 3LK2A 3D7IA 5DIKA 5ADXK 2IJCA 3AA1A 1VKEA 1GU9A 1ME5A 2CWQA 2ES9A 2PFXA 3C1LA 2AF7A 3AA0A 2QEUA 3AAEA 2KZ7A 3LVYA 4G9QA 5DIPA 3LK3A 3LK41 1P8CA 3AAAA 1LW1A 1IZNA 2O4DA 2JN8A 5AFUK 3BEYA 3AA7A 2GMYA 2KXPA 2OUWA 2PRRA 4AKRA 2Q0TA 3AA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KNC A;  2OYO A;  3D7I A;  5DIK A;  2IJC A;  1VKE A;  1GU9 A;  1ME5 A;  2CWQ A;  2PFX A;  3C1L A;  4G9Q A;  2AF7 A;  2QEU A;  3LVY A;  5DIP A;  1P8C A;  1LW1 A;  2O4D A;  3BEY A;  2GMY A;  2OUW A;  2PRR A;  2Q0T A; 
#chains in the Genus database with same CATH topology
 1KNC A;  2OYO A;  3LK2 A;  3D7I A;  5DIK A;  5ADX K;  2IJC A;  3AA1 A;  1VKE A;  1GU9 A;  1ME5 A;  2CWQ A;  2ES9 A;  2PFX A;  3C1L A;  2AF7 A;  3AA0 A;  2QEU A;  3AAE A;  2KZ7 A;  3LVY A;  4G9Q A;  5DIP A;  3LK3 A;  3LK4 1;  1P8C A;  3AAA A;  1LW1 A;  1IZN A;  2O4D A;  2JN8 A;  5AFU K;  3BEY A;  3AA7 A;  2GMY A;  2KXP A;  2OUW A;  2PRR A;  4AKR A;  2Q0T A;  3AA6 A; 
#chains in the Genus database with same CATH homology
 1KNC A;  2OYO A;  3LK2 A;  3D7I A;  5DIK A;  5ADX K;  2IJC A;  3AA1 A;  1VKE A;  1GU9 A;  1ME5 A;  2CWQ A;  2ES9 A;  2PFX A;  3C1L A;  2AF7 A;  3AA0 A;  2QEU A;  3AAE A;  2KZ7 A;  3LVY A;  4G9Q A;  5DIP A;  3LK3 A;  3LK4 1;  1P8C A;  3AAA A;  1LW1 A;  1IZN A;  2O4D A;  2JN8 A;  5AFU K;  3BEY A;  3AA7 A;  2GMY A;  2KXP A;  2OUW A;  2PRR A;  4AKR A;  2Q0T A;  3AA6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...