1GU9A

Crystal structure of mycobacterium tuberculosis alkylperoxidase ahpd
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
172
structure length
172
Chain Sequence
EKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ALKYLHYDROPEROXIDASE D
publication title The Crystal Structure of Mycobacterium Tuberculosis Alkylhydroperoxidase Ahpd, a Potential Target for Antitubercular Drug Design
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Oxidoreductase
total genus 62
structure length 172
sequence length 172
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2002-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1gu9A00
1P8CA 2OUWA 1VKEA 2Q0TA 2AF7A 3C1LA 2GMYA 1KNCA 3LVYA 2OYOA 4G9QA 2O4DA 3BEYA 5DIKA 1ME5A 2PRRA 5DIPA 2QEUA 1LW1A 2CWQA 1GU9A 3D7IA 2PFXA 2IJCA
chains in the Genus database with same CATH superfamily
1IZNA 3AAAA 3LK3A 1P8CA 2OUWA 4AKRA 2KZ7A 1VKEA 2KXPA 2AF7A 2Q0TA 3C1LA 5ADXK 2GMYA 1KNCA 3LVYA 2OYOA 2ES9A 3AA6A 3LK2A 4G9QA 3AA1A 2O4DA 3BEYA 5AFUK 5DIKA 3AA0A 1ME5A 3AA7A 2PRRA 5DIPA 2QEUA 2JN8A 1LW1A 2CWQA 1GU9A 3LK41 3D7IA 2PFXA 2IJCA 3AAEA
chains in the Genus database with same CATH topology
1IZNA 3AAAA 3LK3A 1P8CA 2OUWA 4AKRA 2KZ7A 1VKEA 2KXPA 2AF7A 2Q0TA 3C1LA 5ADXK 2GMYA 1KNCA 3LVYA 2OYOA 2ES9A 3AA6A 3LK2A 4G9QA 3AA1A 2O4DA 3BEYA 5AFUK 5DIKA 3AA0A 1ME5A 3AA7A 2PRRA 5DIPA 2QEUA 2JN8A 1LW1A 2CWQA 1GU9A 3LK41 3D7IA 2PFXA 2IJCA 3AAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P8C A;  2OUW A;  1VKE A;  2Q0T A;  2AF7 A;  3C1L A;  2GMY A;  1KNC A;  3LVY A;  2OYO A;  4G9Q A;  2O4D A;  3BEY A;  5DIK A;  1ME5 A;  2PRR A;  5DIP A;  2QEU A;  1LW1 A;  2CWQ A;  1GU9 A;  3D7I A;  2PFX A;  2IJC A; 
#chains in the Genus database with same CATH topology
 1IZN A;  3AAA A;  3LK3 A;  1P8C A;  2OUW A;  4AKR A;  2KZ7 A;  1VKE A;  2KXP A;  2AF7 A;  2Q0T A;  3C1L A;  5ADX K;  2GMY A;  1KNC A;  3LVY A;  2OYO A;  2ES9 A;  3AA6 A;  3LK2 A;  4G9Q A;  3AA1 A;  2O4D A;  3BEY A;  5AFU K;  5DIK A;  3AA0 A;  1ME5 A;  3AA7 A;  2PRR A;  5DIP A;  2QEU A;  2JN8 A;  1LW1 A;  2CWQ A;  1GU9 A;  3LK4 1;  3D7I A;  2PFX A;  2IJC A;  3AAE A; 
#chains in the Genus database with same CATH homology
 1IZN A;  3AAA A;  3LK3 A;  1P8C A;  2OUW A;  4AKR A;  2KZ7 A;  1VKE A;  2KXP A;  2AF7 A;  2Q0T A;  3C1L A;  5ADX K;  2GMY A;  1KNC A;  3LVY A;  2OYO A;  2ES9 A;  3AA6 A;  3LK2 A;  4G9Q A;  3AA1 A;  2O4D A;  3BEY A;  5AFU K;  5DIK A;  3AA0 A;  1ME5 A;  3AA7 A;  2PRR A;  5DIP A;  2QEU A;  2JN8 A;  1LW1 A;  2CWQ A;  1GU9 A;  3LK4 1;  3D7I A;  2PFX A;  2IJC A;  3AAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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