1GU9A

Crystal structure of mycobacterium tuberculosis alkylperoxidase ahpd
Total Genus 62
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
172
structure length
172
Chain Sequence
EKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The Crystal Structure of Mycobacterium Tuberculosis Alkylhydroperoxidase Ahpd, a Potential Target for Antitubercular Drug Design
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Mycobacterium tuberculosis
molecule keywords ALKYLHYDROPEROXIDASE D
total genus 62
structure length 172
sequence length 172
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2002-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1gu9A00
1LW1A 5DIKA 2OYOA 2Q0TA 2IJCA 2PRRA 3LVYA 1VKEA 1P8CA 2PFXA 1KNCA 2OUWA 1GU9A 2AF7A 1ME5A 2CWQA 3C1LA 3BEYA 5DIPA 4G9QA 2O4DA 3D7IA 2QEUA 2GMYA
chains in the Genus database with same CATH superfamily
1LW1A 5DIKA 2KXPA 2OYOA 2Q0TA 2IJCA 2PRRA 3LVYA 2ES9A 3LK41 1VKEA 1P8CA 2PFXA 3AA1A 1KNCA 2OUWA 1GU9A 2AF7A 1ME5A 3AA6A 2CWQA 2KZ7A 3C1LA 1IZNA 4AKRA 5AFUK 3AA7A 5ADXK 3BEYA 5DIPA 4G9QA 2O4DA 2JN8A 3AAAA 3AA0A 3LK3A 3D7IA 3LK2A 2QEUA 2GMYA 3AAEA
chains in the Genus database with same CATH topology
1LW1A 5DIKA 2KXPA 2OYOA 2Q0TA 2IJCA 2PRRA 3LVYA 2ES9A 3LK41 1VKEA 1P8CA 2PFXA 3AA1A 1KNCA 2OUWA 1GU9A 2AF7A 1ME5A 3AA6A 2CWQA 2KZ7A 3C1LA 1IZNA 4AKRA 5AFUK 3AA7A 5ADXK 3BEYA 5DIPA 4G9QA 2O4DA 2JN8A 3AAAA 3AA0A 3LK3A 3D7IA 3LK2A 2QEUA 2GMYA 3AAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LW1 A;  5DIK A;  2OYO A;  2Q0T A;  2IJC A;  2PRR A;  3LVY A;  1VKE A;  1P8C A;  2PFX A;  1KNC A;  2OUW A;  1GU9 A;  2AF7 A;  1ME5 A;  2CWQ A;  3C1L A;  3BEY A;  5DIP A;  4G9Q A;  2O4D A;  3D7I A;  2QEU A;  2GMY A; 
#chains in the Genus database with same CATH topology
 1LW1 A;  5DIK A;  2KXP A;  2OYO A;  2Q0T A;  2IJC A;  2PRR A;  3LVY A;  2ES9 A;  3LK4 1;  1VKE A;  1P8C A;  2PFX A;  3AA1 A;  1KNC A;  2OUW A;  1GU9 A;  2AF7 A;  1ME5 A;  3AA6 A;  2CWQ A;  2KZ7 A;  3C1L A;  1IZN A;  4AKR A;  5AFU K;  3AA7 A;  5ADX K;  3BEY A;  5DIP A;  4G9Q A;  2O4D A;  2JN8 A;  3AAA A;  3AA0 A;  3LK3 A;  3D7I A;  3LK2 A;  2QEU A;  2GMY A;  3AAE A; 
#chains in the Genus database with same CATH homology
 1LW1 A;  5DIK A;  2KXP A;  2OYO A;  2Q0T A;  2IJC A;  2PRR A;  3LVY A;  2ES9 A;  3LK4 1;  1VKE A;  1P8C A;  2PFX A;  3AA1 A;  1KNC A;  2OUW A;  1GU9 A;  2AF7 A;  1ME5 A;  3AA6 A;  2CWQ A;  2KZ7 A;  3C1L A;  1IZN A;  4AKR A;  5AFU K;  3AA7 A;  5ADX K;  3BEY A;  5DIP A;  4G9Q A;  2O4D A;  2JN8 A;  3AAA A;  3AA0 A;  3LK3 A;  3D7I A;  3LK2 A;  2QEU A;  2GMY A;  3AAE A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...