1GWEA

Atomic resolution structure of micrococcus lysodeikticus catalase
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
498
structure length
498
Chain Sequence
TTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYDLVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQDVQARAFEYWKNVDATIGQRIEDEVKRHEGDGIPGVEAGGEARI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The Structures of Micrococcus Lysodeikticus Catalase, its Ferryl Intermediate (Compound II) and Nadph Complex.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Catalase
total genus 163
structure length 498
sequence length 498
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2002-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1gweA00
1GGFA 3TTXA 4ENPA 4ENSA 4B5KA 1CF9A 1NM0A 3VU3A 4E37A 1MQFA 1P81A 1QWSA 4QOQA 1H6NA 1HBZA 3TTTA 1QWLA 3DY5A 1P7ZA 3HB6A 3PQ8A 4QOPA 4AUEA 4ENRA 3TTVA 1GGJA 1GG9A 2IUFA 1M7SA 3TTUA 1P80A 3P9RA 4BFLA 5BV2P 4ENTA 4ENVA 3PQ5A 2ISAA 2A9EA 4ENUA 2CAHA 4B7AA 2J2MA 1P7YA 4AUNA 2IQFA 3ZJ4A 1GGHA 3TTWA 1M85A 4QORA 4QONA 3PQ7A 3PQ4A 4B2YA 3ZJ5A 1A4EA 1SY7A 1GGKA 4QOMA 1IPHA 1U5UA 4AULA 1QWMA 1GWFA 4ENWA 3PQ6A 4AJ9A 3PQ2A 1GGEA 4ENQA 2XQ1A 4B31A 1H7KA 1F4JA 1QF7A 4BIMA 2XF2A 3EJ6A 3PQ3A 3P9QA 2CAGA 1GWHA 4CABA 1SI8A 4QOLA 4AUMA 3P9PA 1GWEA 3P9SA 1E93A 4B40A 4QOOA
chains in the Genus database with same CATH superfamily
1TH4A 1DGHA 1GGFA 1QQWA 3TTXA 4ENPA 4ENSA 4B5KA 1CF9A 1NM0A 3VU3A 4E37A 1MQFA 1P81A 4B7FA 1QWSA 4QOQA 1H6NA 1HBZA 3TTTA 1QWLA 3DY5A 1P7ZA 3HB6A 3PQ8A 4QOPA 4AUEA 4ENRA 3TTVA 1GGJA 1GG9A 2IUFA 1M7SA 3TTUA 1TH3A 3E4WA 1P80A 3P9RA 4BFLA 5BV2P 4ENTA 4ENVA 3NWLA 3RGSA 3PQ5A 4BLCA 2ISAA 2A9EA 4ENUA 2CAHA 4B7AA 2J2MA 1P7YA 4AUNA 2IQFA 3ZJ4A 3RE8A 1GGHA 3TTWA 1TGUA 1M85A 3RGPA 4QORA 4QONA 3PQ7A 3E4YA 7CATA 3PQ4A 4B2YA 3ZJ5A 1A4EA 1DGBA 1SY7A 1GGKA 4QOMA 1IPHA 1U5UA 4AULA 1QWMA 1GWFA 1DGFA 4ENWA 3PQ6A 4AJ9A 3PQ2A 1DGGA 1GGEA 8CATA 1DGHB 4ENQA 5GKNA 2XQ1A 4B31A 4B7HA 1H7KA 1F4JA 1QF7A 4BIMA 2XF2A 3EJ6A 3PQ3A 3P9QA 3J7BA 2CAGA 1GWHA 4B7GA 4CABA 1SI8A 4QOLA 4AUMA 3P9PA 1GWEA 3P9SA 1E93A 4B40A 4QOOA 1TH2A
chains in the Genus database with same CATH topology
1GGFA 3TTXA 4ENPA 4ENSA 4B5KA 1CF9A 1NM0A 3VU3A 4E37A 1MQFA 1P81A 1QWSA 4QOQA 1H6NA 1HBZA 3TTTA 1QWLA 3DY5A 1P7ZA 3HB6A 3PQ8A 4QOPA 4AUEA 4ENRA 3TTVA 1GGJA 1GG9A 2IUFA 1M7SA 3TTUA 1P80A 3P9RA 4BFLA 5BV2P 4ENTA 4ENVA 3PQ5A 2ISAA 2A9EA 4ENUA 2CAHA 4B7AA 2J2MA 1P7YA 4AUNA 2IQFA 3ZJ4A 1GGHA 3TTWA 1M85A 4QORA 4QONA 3PQ7A 3PQ4A 4B2YA 3ZJ5A 1A4EA 1SY7A 1GGKA 4QOMA 1IPHA 1U5UA 4AULA 1QWMA 1GWFA 4ENWA 3PQ6A 4AJ9A 3PQ2A 1GGEA 4ENQA 2XQ1A 4B31A 1H7KA 1F4JA 1QF7A 4BIMA 2XF2A 3EJ6A 3PQ3A 3P9QA 2CAGA 1GWHA 4CABA 1SI8A 4QOLA 4AUMA 3P9PA 1GWEA 3P9SA 1E93A 4B40A 4QOOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GGF A;  3TTX A;  4ENP A;  4ENS A;  4B5K A;  1CF9 A;  1NM0 A;  3VU3 A;  4E37 A;  1MQF A;  1P81 A;  1QWS A;  4QOQ A;  1H6N A;  1HBZ A;  3TTT A;  1QWL A;  3DY5 A;  1P7Z A;  3HB6 A;  3PQ8 A;  4QOP A;  4AUE A;  4ENR A;  3TTV A;  1GGJ A;  1GG9 A;  2IUF A;  1M7S A;  3TTU A;  1P80 A;  3P9R A;  4BFL A;  5BV2 P;  4ENT A;  4ENV A;  3PQ5 A;  2ISA A;  2A9E A;  4ENU A;  2CAH A;  4B7A A;  2J2M A;  1P7Y A;  4AUN A;  2IQF A;  3ZJ4 A;  1GGH A;  3TTW A;  1M85 A;  4QOR A;  4QON A;  3PQ7 A;  3PQ4 A;  4B2Y A;  3ZJ5 A;  1A4E A;  1SY7 A;  1GGK A;  4QOM A;  1IPH A;  1U5U A;  4AUL A;  1QWM A;  1GWF A;  4ENW A;  3PQ6 A;  4AJ9 A;  3PQ2 A;  1GGE A;  4ENQ A;  2XQ1 A;  4B31 A;  1H7K A;  1F4J A;  1QF7 A;  4BIM A;  2XF2 A;  3EJ6 A;  3PQ3 A;  3P9Q A;  2CAG A;  1GWH A;  4CAB A;  1SI8 A;  4QOL A;  4AUM A;  3P9P A;  1GWE A;  3P9S A;  1E93 A;  4B40 A;  4QOO A; 
#chains in the Genus database with same CATH topology
 1TH4 A;  1DGH A;  1GGF A;  1QQW A;  3TTX A;  4ENP A;  4ENS A;  4B5K A;  1CF9 A;  1NM0 A;  3VU3 A;  4E37 A;  1MQF A;  1P81 A;  4B7F A;  1QWS A;  4QOQ A;  1H6N A;  1HBZ A;  3TTT A;  1QWL A;  3DY5 A;  1P7Z A;  3HB6 A;  3PQ8 A;  4QOP A;  4AUE A;  4ENR A;  3TTV A;  1GGJ A;  1GG9 A;  2IUF A;  1M7S A;  3TTU A;  1TH3 A;  3E4W A;  1P80 A;  3P9R A;  4BFL A;  5BV2 P;  4ENT A;  4ENV A;  3NWL A;  3RGS A;  3PQ5 A;  4BLC A;  2ISA A;  2A9E A;  4ENU A;  2CAH A;  4B7A A;  2J2M A;  1P7Y A;  4AUN A;  2IQF A;  3ZJ4 A;  3RE8 A;  1GGH A;  3TTW A;  1TGU A;  1M85 A;  3RGP A;  4QOR A;  4QON A;  3PQ7 A;  3E4Y A;  7CAT A;  3PQ4 A;  4B2Y A;  3ZJ5 A;  1A4E A;  1DGB A;  1SY7 A;  1GGK A;  4QOM A;  1IPH A;  1U5U A;  4AUL A;  1QWM A;  1GWF A;  1DGF A;  4ENW A;  3PQ6 A;  4AJ9 A;  3PQ2 A;  1DGG A;  1GGE A;  8CAT A;  1DGH B;  4ENQ A;  5GKN A;  2XQ1 A;  4B31 A;  4B7H A;  1H7K A;  1F4J A;  1QF7 A;  4BIM A;  2XF2 A;  3EJ6 A;  3PQ3 A;  3P9Q A;  3J7B A;  2CAG A;  1GWH A;  4B7G A;  4CAB A;  1SI8 A;  4QOL A;  4AUM A;  3P9P A;  1GWE A;  3P9S A;  1E93 A;  4B40 A;  4QOO A;  1TH2 A; 
#chains in the Genus database with same CATH homology
 1GGF A;  3TTX A;  4ENP A;  4ENS A;  4B5K A;  1CF9 A;  1NM0 A;  3VU3 A;  4E37 A;  1MQF A;  1P81 A;  1QWS A;  4QOQ A;  1H6N A;  1HBZ A;  3TTT A;  1QWL A;  3DY5 A;  1P7Z A;  3HB6 A;  3PQ8 A;  4QOP A;  4AUE A;  4ENR A;  3TTV A;  1GGJ A;  1GG9 A;  2IUF A;  1M7S A;  3TTU A;  1P80 A;  3P9R A;  4BFL A;  5BV2 P;  4ENT A;  4ENV A;  3PQ5 A;  2ISA A;  2A9E A;  4ENU A;  2CAH A;  4B7A A;  2J2M A;  1P7Y A;  4AUN A;  2IQF A;  3ZJ4 A;  1GGH A;  3TTW A;  1M85 A;  4QOR A;  4QON A;  3PQ7 A;  3PQ4 A;  4B2Y A;  3ZJ5 A;  1A4E A;  1SY7 A;  1GGK A;  4QOM A;  1IPH A;  1U5U A;  4AUL A;  1QWM A;  1GWF A;  4ENW A;  3PQ6 A;  4AJ9 A;  3PQ2 A;  1GGE A;  4ENQ A;  2XQ1 A;  4B31 A;  1H7K A;  1F4J A;  1QF7 A;  4BIM A;  2XF2 A;  3EJ6 A;  3PQ3 A;  3P9Q A;  2CAG A;  1GWH A;  4CAB A;  1SI8 A;  4QOL A;  4AUM A;  3P9P A;  1GWE A;  3P9S A;  1E93 A;  4B40 A;  4QOO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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