1GWFA

Compound ii structure of micrococcus lysodeikticus catalase
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
498
structure length
493
Chain Sequence
TTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRNIPERRPHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYDLVGNNTPIFFLRDPKFTHFIRSQKRLPDSGLRDATQWDFWTNNPESAHQVTYLGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFEGQWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQDVQARAFEYWKNVDATIGQRIEDEVKRHEGDGIPGVEAGGEARI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The Structures of Micrococcus Lysodeikticus Catalase, its Ferryl Intermediate (Compound II) and Nadph Complex.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Micrococcus luteus
molecule keywords Catalase
total genus 157
structure length 493
sequence length 498
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2002-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1gwfA00
2ISAA 2XQ1A 4ENTA 3DY5A 2IQFA 2J2MA 1HBZA 1GG9A 3TTTA 4ENRA 1P81A 4QOQA 3VU3A 2IUFA 3PQ5A 1U5UA 3P9RA 1IPHA 3TTVA 3P9QA 3PQ8A 4B5KA 1GGEA 1NM0A 1SI8A 3ZJ5A 4E37A 4BFLA 1M85A 3PQ4A 1GGFA 1GGHA 4B31A 4QOOA 1H6NA 1GGKA 1M7SA 1QWSA 1A4EA 3P9SA 4AULA 2XF2A 1CF9A 3TTUA 4ENUA 4B2YA 4QONA 4QOMA 4B40A 3PQ6A 1GGJA 3ZJ4A 4QOLA 3PQ7A 3TTWA 1P7YA 4ENPA 4AUNA 1H7KA 1QWMA 4AUEA 4B7AA 2A9EA 1GWFA 4BIMA 4ENSA 3PQ3A 3TTXA 2CAGA 4AUMA 1GWHA 3HB6A 1QF7A 4AJ9A 1QWLA 3EJ6A 1SY7A 4ENQA 1P7ZA 4CABA 1MQFA 3P9PA 5BV2P 1F4JA 1P80A 4QOPA 4QORA 1GWEA 1E93A 2CAHA 4ENWA 4ENVA 3PQ2A
chains in the Genus database with same CATH superfamily
2ISAA 2XQ1A 4ENTA 3DY5A 2IQFA 2J2MA 3NWLA 1HBZA 1GG9A 3TTTA 4ENRA 1P81A 4QOQA 3VU3A 2IUFA 3PQ5A 1U5UA 3P9RA 1IPHA 1DGHB 3TTVA 3E4WA 3P9QA 3PQ8A 4B5KA 1QQWA 1GGEA 1NM0A 1SI8A 3ZJ5A 4E37A 4BLCA 1TH4A 4BFLA 1M85A 3PQ4A 1GGFA 1GGHA 4B31A 4QOOA 1H6NA 1GGKA 1M7SA 1QWSA 1A4EA 3J7BA 3P9SA 3RGSA 2XF2A 4AULA 1CF9A 3TTUA 7CATA 4ENUA 4B2YA 4QONA 3RGPA 4QOMA 4B40A 1TH2A 3PQ6A 1GGJA 3ZJ4A 5GKNA 1DGGA 4QOLA 1DGFA 3PQ7A 3TTWA 1P7YA 4ENPA 4AUNA 1H7KA 1QWMA 4AUEA 4B7AA 2A9EA 1GWFA 1DGBA 4BIMA 4ENSA 3PQ3A 3TTXA 2CAGA 4AUMA 4B7FA 1GWHA 3RE8A 3HB6A 1QF7A 4AJ9A 1QWLA 8CATA 3EJ6A 1SY7A 4B7GA 4ENQA 3E4YA 1P7ZA 4CABA 1MQFA 3P9PA 5BV2P 1TH3A 1F4JA 4B7HA 1TGUA 1P80A 4QOPA 4QORA 1DGHA 1GWEA 1E93A 2CAHA 4ENWA 4ENVA 3PQ2A
chains in the Genus database with same CATH topology
2ISAA 2XQ1A 4ENTA 3DY5A 2IQFA 2J2MA 1HBZA 1GG9A 3TTTA 4ENRA 1P81A 4QOQA 3VU3A 2IUFA 3PQ5A 1U5UA 3P9RA 1IPHA 3TTVA 3P9QA 3PQ8A 4B5KA 1GGEA 1NM0A 1SI8A 3ZJ5A 4E37A 4BFLA 1M85A 3PQ4A 1GGFA 1GGHA 4B31A 4QOOA 1H6NA 1GGKA 1M7SA 1QWSA 1A4EA 3P9SA 4AULA 2XF2A 1CF9A 3TTUA 4ENUA 4B2YA 4QONA 4QOMA 4B40A 3PQ6A 1GGJA 3ZJ4A 4QOLA 3PQ7A 3TTWA 1P7YA 4ENPA 4AUNA 1H7KA 1QWMA 4AUEA 4B7AA 2A9EA 1GWFA 4BIMA 4ENSA 3PQ3A 3TTXA 2CAGA 4AUMA 1GWHA 3HB6A 1QF7A 4AJ9A 1QWLA 3EJ6A 1SY7A 4ENQA 1P7ZA 4CABA 1MQFA 3P9PA 5BV2P 1F4JA 1P80A 4QOPA 4QORA 1GWEA 1E93A 2CAHA 4ENWA 4ENVA 3PQ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ISA A;  2XQ1 A;  4ENT A;  3DY5 A;  2IQF A;  2J2M A;  1HBZ A;  1GG9 A;  3TTT A;  4ENR A;  1P81 A;  4QOQ A;  3VU3 A;  2IUF A;  3PQ5 A;  1U5U A;  3P9R A;  1IPH A;  3TTV A;  3P9Q A;  3PQ8 A;  4B5K A;  1GGE A;  1NM0 A;  1SI8 A;  3ZJ5 A;  4E37 A;  4BFL A;  1M85 A;  3PQ4 A;  1GGF A;  1GGH A;  4B31 A;  4QOO A;  1H6N A;  1GGK A;  1M7S A;  1QWS A;  1A4E A;  3P9S A;  4AUL A;  2XF2 A;  1CF9 A;  3TTU A;  4ENU A;  4B2Y A;  4QON A;  4QOM A;  4B40 A;  3PQ6 A;  1GGJ A;  3ZJ4 A;  4QOL A;  3PQ7 A;  3TTW A;  1P7Y A;  4ENP A;  4AUN A;  1H7K A;  1QWM A;  4AUE A;  4B7A A;  2A9E A;  1GWF A;  4BIM A;  4ENS A;  3PQ3 A;  3TTX A;  2CAG A;  4AUM A;  1GWH A;  3HB6 A;  1QF7 A;  4AJ9 A;  1QWL A;  3EJ6 A;  1SY7 A;  4ENQ A;  1P7Z A;  4CAB A;  1MQF A;  3P9P A;  5BV2 P;  1F4J A;  1P80 A;  4QOP A;  4QOR A;  1GWE A;  1E93 A;  2CAH A;  4ENW A;  4ENV A;  3PQ2 A; 
#chains in the Genus database with same CATH topology
 2ISA A;  2XQ1 A;  4ENT A;  3DY5 A;  2IQF A;  2J2M A;  3NWL A;  1HBZ A;  1GG9 A;  3TTT A;  4ENR A;  1P81 A;  4QOQ A;  3VU3 A;  2IUF A;  3PQ5 A;  1U5U A;  3P9R A;  1IPH A;  1DGH B;  3TTV A;  3E4W A;  3P9Q A;  3PQ8 A;  4B5K A;  1QQW A;  1GGE A;  1NM0 A;  1SI8 A;  3ZJ5 A;  4E37 A;  4BLC A;  1TH4 A;  4BFL A;  1M85 A;  3PQ4 A;  1GGF A;  1GGH A;  4B31 A;  4QOO A;  1H6N A;  1GGK A;  1M7S A;  1QWS A;  1A4E A;  3J7B A;  3P9S A;  3RGS A;  2XF2 A;  4AUL A;  1CF9 A;  3TTU A;  7CAT A;  4ENU A;  4B2Y A;  4QON A;  3RGP A;  4QOM A;  4B40 A;  1TH2 A;  3PQ6 A;  1GGJ A;  3ZJ4 A;  5GKN A;  1DGG A;  4QOL A;  1DGF A;  3PQ7 A;  3TTW A;  1P7Y A;  4ENP A;  4AUN A;  1H7K A;  1QWM A;  4AUE A;  4B7A A;  2A9E A;  1GWF A;  1DGB A;  4BIM A;  4ENS A;  3PQ3 A;  3TTX A;  2CAG A;  4AUM A;  4B7F A;  1GWH A;  3RE8 A;  3HB6 A;  1QF7 A;  4AJ9 A;  1QWL A;  8CAT A;  3EJ6 A;  1SY7 A;  4B7G A;  4ENQ A;  3E4Y A;  1P7Z A;  4CAB A;  1MQF A;  3P9P A;  5BV2 P;  1TH3 A;  1F4J A;  4B7H A;  1TGU A;  1P80 A;  4QOP A;  4QOR A;  1DGH A;  1GWE A;  1E93 A;  2CAH A;  4ENW A;  4ENV A;  3PQ2 A; 
#chains in the Genus database with same CATH homology
 2ISA A;  2XQ1 A;  4ENT A;  3DY5 A;  2IQF A;  2J2M A;  1HBZ A;  1GG9 A;  3TTT A;  4ENR A;  1P81 A;  4QOQ A;  3VU3 A;  2IUF A;  3PQ5 A;  1U5U A;  3P9R A;  1IPH A;  3TTV A;  3P9Q A;  3PQ8 A;  4B5K A;  1GGE A;  1NM0 A;  1SI8 A;  3ZJ5 A;  4E37 A;  4BFL A;  1M85 A;  3PQ4 A;  1GGF A;  1GGH A;  4B31 A;  4QOO A;  1H6N A;  1GGK A;  1M7S A;  1QWS A;  1A4E A;  3P9S A;  4AUL A;  2XF2 A;  1CF9 A;  3TTU A;  4ENU A;  4B2Y A;  4QON A;  4QOM A;  4B40 A;  3PQ6 A;  1GGJ A;  3ZJ4 A;  4QOL A;  3PQ7 A;  3TTW A;  1P7Y A;  4ENP A;  4AUN A;  1H7K A;  1QWM A;  4AUE A;  4B7A A;  2A9E A;  1GWF A;  4BIM A;  4ENS A;  3PQ3 A;  3TTX A;  2CAG A;  4AUM A;  1GWH A;  3HB6 A;  1QF7 A;  4AJ9 A;  1QWL A;  3EJ6 A;  1SY7 A;  4ENQ A;  1P7Z A;  4CAB A;  1MQF A;  3P9P A;  5BV2 P;  1F4J A;  1P80 A;  4QOP A;  4QOR A;  1GWE A;  1E93 A;  2CAH A;  4ENW A;  4ENV A;  3PQ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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