1GWFA

Compound ii structure of micrococcus lysodeikticus catalase
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
498
structure length
493
Chain Sequence
b'TTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRNIPERRPHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYDLVGNNTPIFFLRDPKFTHFIRSQKRLPDSGLRDATQWDFWTNNPESAHQVTYLGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFEGQWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQDVQARAFEYWKNVDATIGQRIEDEVKRHEGDGIPGVEAGGEARI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Catalase
publication title The Structures of Micrococcus Lysodeikticus Catalase, its Ferryl Intermediate (Compound II) and Nadph Complex.
pubmed doi rcsb
source organism Micrococcus luteus
molecule tags Oxidoreductase
total genus 157
structure length 493
sequence length 498
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2002-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1gwfA00
1GGHA 3PQ4A 4QONA 2IUFA 1GGKA 1P81A 1H6NA 1GGJA 1P80A 1P7ZA 2CAGA 1F4JA 4QOMA 1MQFA 4ENWA 3PQ5A 1HBZA 3EJ6A 4ENUA 4ENTA 4B2YA 3ZJ5A 3ZJ4A 4BFLA 1GGFA 3PQ7A 4AJ9A 1E93A 1QWSA 3P9QA 1A4EA 3HB6A 4ENRA 1M85A 1IPHA 4QOLA 3VU3A 3DY5A 4AUEA 3TTVA 4ENVA 1CF9A 4AULA 3PQ2A 2ISAA 2XQ1A 3TTXA 3P9PA 1QWLA 2CAHA 4QORA 1QF7A 4B7AA 1SY7A 1NM0A 4ENPA 1GWHA 4ENQA 1GG9A 4ENSA 4QOPA 1P7YA 3P9SA 1GWFA 2XF2A 2J2MA 5BV2P 3TTWA 4AUMA 1GGEA 4BIMA 1M7SA 2A9EA 3TTTA 1SI8A 4QOQA 4AUNA 4E37A 3PQ6A 4QOOA 3TTUA 1GWEA 3PQ8A 1U5UA 3PQ3A 4B31A 4B40A 2IQFA 4B5KA 1QWMA 4CABA 1H7KA 3P9RA
chains in the Genus database with same CATH superfamily
1GGHA 3PQ4A 4QONA 1TH2A 2IUFA 1GGKA 1P81A 1H6NA 1QQWA 4B7FA 1GGJA 1DGHA 1P80A 1P7ZA 2CAGA 1F4JA 4QOMA 1MQFA 3NWLA 4ENWA 3PQ5A 1HBZA 3EJ6A 4ENUA 4ENTA 4B2YA 3ZJ5A 3ZJ4A 4BFLA 1GGFA 3PQ7A 4B7HA 4AJ9A 1E93A 3RGSA 1QWSA 7CATA 5GKNA 3RGPA 3P9QA 1A4EA 3HB6A 4ENRA 1M85A 1IPHA 3E4YA 4QOLA 3VU3A 3DY5A 1DGHB 4AUEA 3TTVA 4ENVA 1CF9A 3E4WA 4AULA 3PQ2A 2ISAA 2XQ1A 3TTXA 1TH4A 3P9PA 1QWLA 2CAHA 4QORA 1QF7A 4B7AA 1SY7A 1NM0A 4ENPA 1GWHA 4ENQA 4B7GA 1GG9A 4ENSA 4QOPA 1P7YA 3P9SA 1GWFA 1DGGA 1TGUA 2XF2A 2J2MA 5BV2P 3TTWA 4AUMA 1GGEA 4BIMA 1M7SA 2A9EA 3RE8A 1SI8A 3TTTA 4QOQA 4AUNA 1DGBA 8CATA 4E37A 3J7BA 3PQ6A 4QOOA 3TTUA 1GWEA 3PQ8A 1U5UA 1DGFA 3PQ3A 4B31A 4B40A 2IQFA 4B5KA 1QWMA 4CABA 1H7KA 4BLCA 1TH3A 3P9RA
chains in the Genus database with same CATH topology
1GGHA 3PQ4A 4QONA 2IUFA 1GGKA 1P81A 1H6NA 1GGJA 1P80A 1P7ZA 2CAGA 1F4JA 4QOMA 1MQFA 4ENWA 3PQ5A 1HBZA 3EJ6A 4ENUA 4ENTA 4B2YA 3ZJ5A 3ZJ4A 4BFLA 1GGFA 3PQ7A 4AJ9A 1E93A 1QWSA 3P9QA 1A4EA 3HB6A 4ENRA 1M85A 1IPHA 4QOLA 3VU3A 3DY5A 4AUEA 3TTVA 4ENVA 1CF9A 4AULA 3PQ2A 2ISAA 2XQ1A 3TTXA 3P9PA 1QWLA 2CAHA 4QORA 1QF7A 4B7AA 1SY7A 1NM0A 4ENPA 1GWHA 4ENQA 1GG9A 4ENSA 4QOPA 1P7YA 3P9SA 1GWFA 2XF2A 2J2MA 5BV2P 3TTWA 4AUMA 1GGEA 4BIMA 1M7SA 2A9EA 3TTTA 1SI8A 4QOQA 4AUNA 4E37A 3PQ6A 4QOOA 3TTUA 1GWEA 3PQ8A 1U5UA 3PQ3A 4B31A 4B40A 2IQFA 4B5KA 1QWMA 4CABA 1H7KA 3P9RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GGH A;  3PQ4 A;  4QON A;  2IUF A;  1GGK A;  1P81 A;  1H6N A;  1GGJ A;  1P80 A;  1P7Z A;  2CAG A;  1F4J A;  4QOM A;  1MQF A;  4ENW A;  3PQ5 A;  1HBZ A;  3EJ6 A;  4ENU A;  4ENT A;  4B2Y A;  3ZJ5 A;  3ZJ4 A;  4BFL A;  1GGF A;  3PQ7 A;  4AJ9 A;  1E93 A;  1QWS A;  3P9Q A;  1A4E A;  3HB6 A;  4ENR A;  1M85 A;  1IPH A;  4QOL A;  3VU3 A;  3DY5 A;  4AUE A;  3TTV A;  4ENV A;  1CF9 A;  4AUL A;  3PQ2 A;  2ISA A;  2XQ1 A;  3TTX A;  3P9P A;  1QWL A;  2CAH A;  4QOR A;  1QF7 A;  4B7A A;  1SY7 A;  1NM0 A;  4ENP A;  1GWH A;  4ENQ A;  1GG9 A;  4ENS A;  4QOP A;  1P7Y A;  3P9S A;  1GWF A;  2XF2 A;  2J2M A;  5BV2 P;  3TTW A;  4AUM A;  1GGE A;  4BIM A;  1M7S A;  2A9E A;  3TTT A;  1SI8 A;  4QOQ A;  4AUN A;  4E37 A;  3PQ6 A;  4QOO A;  3TTU A;  1GWE A;  3PQ8 A;  1U5U A;  3PQ3 A;  4B31 A;  4B40 A;  2IQF A;  4B5K A;  1QWM A;  4CAB A;  1H7K A;  3P9R A; 
#chains in the Genus database with same CATH topology
 1GGH A;  3PQ4 A;  4QON A;  1TH2 A;  2IUF A;  1GGK A;  1P81 A;  1H6N A;  1QQW A;  4B7F A;  1GGJ A;  1DGH A;  1P80 A;  1P7Z A;  2CAG A;  1F4J A;  4QOM A;  1MQF A;  3NWL A;  4ENW A;  3PQ5 A;  1HBZ A;  3EJ6 A;  4ENU A;  4ENT A;  4B2Y A;  3ZJ5 A;  3ZJ4 A;  4BFL A;  1GGF A;  3PQ7 A;  4B7H A;  4AJ9 A;  1E93 A;  3RGS A;  1QWS A;  7CAT A;  5GKN A;  3RGP A;  3P9Q A;  1A4E A;  3HB6 A;  4ENR A;  1M85 A;  1IPH A;  3E4Y A;  4QOL A;  3VU3 A;  3DY5 A;  1DGH B;  4AUE A;  3TTV A;  4ENV A;  1CF9 A;  3E4W A;  4AUL A;  3PQ2 A;  2ISA A;  2XQ1 A;  3TTX A;  1TH4 A;  3P9P A;  1QWL A;  2CAH A;  4QOR A;  1QF7 A;  4B7A A;  1SY7 A;  1NM0 A;  4ENP A;  1GWH A;  4ENQ A;  4B7G A;  1GG9 A;  4ENS A;  4QOP A;  1P7Y A;  3P9S A;  1GWF A;  1DGG A;  1TGU A;  2XF2 A;  2J2M A;  5BV2 P;  3TTW A;  4AUM A;  1GGE A;  4BIM A;  1M7S A;  2A9E A;  3RE8 A;  1SI8 A;  3TTT A;  4QOQ A;  4AUN A;  1DGB A;  8CAT A;  4E37 A;  3J7B A;  3PQ6 A;  4QOO A;  3TTU A;  1GWE A;  3PQ8 A;  1U5U A;  1DGF A;  3PQ3 A;  4B31 A;  4B40 A;  2IQF A;  4B5K A;  1QWM A;  4CAB A;  1H7K A;  4BLC A;  1TH3 A;  3P9R A; 
#chains in the Genus database with same CATH homology
 1GGH A;  3PQ4 A;  4QON A;  2IUF A;  1GGK A;  1P81 A;  1H6N A;  1GGJ A;  1P80 A;  1P7Z A;  2CAG A;  1F4J A;  4QOM A;  1MQF A;  4ENW A;  3PQ5 A;  1HBZ A;  3EJ6 A;  4ENU A;  4ENT A;  4B2Y A;  3ZJ5 A;  3ZJ4 A;  4BFL A;  1GGF A;  3PQ7 A;  4AJ9 A;  1E93 A;  1QWS A;  3P9Q A;  1A4E A;  3HB6 A;  4ENR A;  1M85 A;  1IPH A;  4QOL A;  3VU3 A;  3DY5 A;  4AUE A;  3TTV A;  4ENV A;  1CF9 A;  4AUL A;  3PQ2 A;  2ISA A;  2XQ1 A;  3TTX A;  3P9P A;  1QWL A;  2CAH A;  4QOR A;  1QF7 A;  4B7A A;  1SY7 A;  1NM0 A;  4ENP A;  1GWH A;  4ENQ A;  1GG9 A;  4ENS A;  4QOP A;  1P7Y A;  3P9S A;  1GWF A;  2XF2 A;  2J2M A;  5BV2 P;  3TTW A;  4AUM A;  1GGE A;  4BIM A;  1M7S A;  2A9E A;  3TTT A;  1SI8 A;  4QOQ A;  4AUN A;  4E37 A;  3PQ6 A;  4QOO A;  3TTU A;  1GWE A;  3PQ8 A;  1U5U A;  3PQ3 A;  4B31 A;  4B40 A;  2IQF A;  4B5K A;  1QWM A;  4CAB A;  1H7K A;  3P9R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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