1GWFA

Compound ii structure of micrococcus lysodeikticus catalase
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
498
structure length
493
Chain Sequence
TTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRNIPERRPHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYDLVGNNTPIFFLRDPKFTHFIRSQKRLPDSGLRDATQWDFWTNNPESAHQVTYLGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFEGQWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQDVQARAFEYWKNVDATIGQRIEDEVKRHEGDGIPGVEAGGEARI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title The Structures of Micrococcus Lysodeikticus Catalase, its Ferryl Intermediate (Compound II) and Nadph Complex.
pubmed doi rcsb
source organism Micrococcus luteus
total genus 157
structure length 493
sequence length 498
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2002-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1gwfA00
4CABA 1GWFA 3P9PA 4B7AA 2CAHA 3TTUA 1HBZA 4QOQA 3DY5A 4QORA 1GGFA 3ZJ4A 4AULA 3P9QA 2CAGA 3PQ3A 1H6NA 3ZJ5A 1P80A 1E93A 3EJ6A 3PQ4A 1H7KA 1M85A 4B5KA 1QWLA 1GWEA 2J2MA 3PQ2A 3PQ7A 1IPHA 4ENQA 5BV2P 1GGJA 1GGHA 4QOPA 4ENVA 2XQ1A 1QWMA 1MQFA 3TTWA 1QWSA 4ENTA 1P81A 4B40A 4B31A 4E37A 2XF2A 2IQFA 3HB6A 4BIMA 4BFLA 1NM0A 1P7ZA 1SI8A 3PQ5A 3TTXA 4QOOA 3P9SA 1M7SA 1CF9A 4QOMA 4QOLA 4ENPA 1GWHA 4ENWA 1GG9A 4AUEA 4ENSA 2ISAA 4ENRA 1SY7A 1GGKA 3TTTA 4AJ9A 4AUNA 1A4EA 1QF7A 3P9RA 1GGEA 1U5UA 2IUFA 3PQ8A 2A9EA 1P7YA 4QONA 4B2YA 3PQ6A 3VU3A 4AUMA 1F4JA 4ENUA 3TTVA
chains in the Genus database with same CATH superfamily
4CABA 1TH4A 1GWFA 3P9PA 4B7AA 2CAHA 3TTUA 1HBZA 8CATA 4QOQA 3DY5A 4QORA 1DGBA 1GGFA 3ZJ4A 4AULA 1DGFA 3P9QA 1TH2A 2CAGA 3PQ3A 1H6NA 3RE8A 3ZJ5A 1P80A 1E93A 3EJ6A 5GKNA 3J7BA 3PQ4A 1H7KA 1M85A 4B5KA 1QWLA 1GWEA 2J2MA 3PQ2A 3PQ7A 1DGHA 1IPHA 7CATA 4ENQA 3E4WA 5BV2P 1GGJA 1GGHA 1QQWA 4QOPA 1TH3A 4ENVA 2XQ1A 3E4YA 4B7FA 1QWMA 4BLCA 1MQFA 3TTWA 1QWSA 4ENTA 1P81A 3RGSA 4B40A 4B31A 4E37A 2XF2A 4B7HA 3NWLA 2IQFA 3HB6A 4BIMA 4BFLA 1NM0A 1P7ZA 1SI8A 3PQ5A 3TTXA 4QOOA 3P9SA 1M7SA 1CF9A 4QOMA 4QOLA 4ENPA 1GWHA 4ENWA 1GG9A 1DGGA 4AUEA 1DGHB 4ENSA 4B7GA 2ISAA 4ENRA 1SY7A 1GGKA 3TTTA 4AJ9A 4AUNA 1A4EA 1QF7A 3P9RA 1GGEA 1U5UA 2IUFA 1TGUA 3PQ8A 3RGPA 2A9EA 1P7YA 4QONA 4B2YA 3PQ6A 3VU3A 4AUMA 1F4JA 4ENUA 3TTVA
chains in the Genus database with same CATH topology
4CABA 1GWFA 3P9PA 4B7AA 2CAHA 3TTUA 1HBZA 4QOQA 3DY5A 4QORA 1GGFA 3ZJ4A 4AULA 3P9QA 2CAGA 3PQ3A 1H6NA 3ZJ5A 1P80A 1E93A 3EJ6A 3PQ4A 1H7KA 1M85A 4B5KA 1QWLA 1GWEA 2J2MA 3PQ2A 3PQ7A 1IPHA 4ENQA 5BV2P 1GGJA 1GGHA 4QOPA 4ENVA 2XQ1A 1QWMA 1MQFA 3TTWA 1QWSA 4ENTA 1P81A 4B40A 4B31A 4E37A 2XF2A 2IQFA 3HB6A 4BIMA 4BFLA 1NM0A 1P7ZA 1SI8A 3PQ5A 3TTXA 4QOOA 3P9SA 1M7SA 1CF9A 4QOMA 4QOLA 4ENPA 1GWHA 4ENWA 1GG9A 4AUEA 4ENSA 2ISAA 4ENRA 1SY7A 1GGKA 3TTTA 4AJ9A 4AUNA 1A4EA 1QF7A 3P9RA 1GGEA 1U5UA 2IUFA 3PQ8A 2A9EA 1P7YA 4QONA 4B2YA 3PQ6A 3VU3A 4AUMA 1F4JA 4ENUA 3TTVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CAB A;  1GWF A;  3P9P A;  4B7A A;  2CAH A;  3TTU A;  1HBZ A;  4QOQ A;  3DY5 A;  4QOR A;  1GGF A;  3ZJ4 A;  4AUL A;  3P9Q A;  2CAG A;  3PQ3 A;  1H6N A;  3ZJ5 A;  1P80 A;  1E93 A;  3EJ6 A;  3PQ4 A;  1H7K A;  1M85 A;  4B5K A;  1QWL A;  1GWE A;  2J2M A;  3PQ2 A;  3PQ7 A;  1IPH A;  4ENQ A;  5BV2 P;  1GGJ A;  1GGH A;  4QOP A;  4ENV A;  2XQ1 A;  1QWM A;  1MQF A;  3TTW A;  1QWS A;  4ENT A;  1P81 A;  4B40 A;  4B31 A;  4E37 A;  2XF2 A;  2IQF A;  3HB6 A;  4BIM A;  4BFL A;  1NM0 A;  1P7Z A;  1SI8 A;  3PQ5 A;  3TTX A;  4QOO A;  3P9S A;  1M7S A;  1CF9 A;  4QOM A;  4QOL A;  4ENP A;  1GWH A;  4ENW A;  1GG9 A;  4AUE A;  4ENS A;  2ISA A;  4ENR A;  1SY7 A;  1GGK A;  3TTT A;  4AJ9 A;  4AUN A;  1A4E A;  1QF7 A;  3P9R A;  1GGE A;  1U5U A;  2IUF A;  3PQ8 A;  2A9E A;  1P7Y A;  4QON A;  4B2Y A;  3PQ6 A;  3VU3 A;  4AUM A;  1F4J A;  4ENU A;  3TTV A; 
#chains in the Genus database with same CATH topology
 4CAB A;  1TH4 A;  1GWF A;  3P9P A;  4B7A A;  2CAH A;  3TTU A;  1HBZ A;  8CAT A;  4QOQ A;  3DY5 A;  4QOR A;  1DGB A;  1GGF A;  3ZJ4 A;  4AUL A;  1DGF A;  3P9Q A;  1TH2 A;  2CAG A;  3PQ3 A;  1H6N A;  3RE8 A;  3ZJ5 A;  1P80 A;  1E93 A;  3EJ6 A;  5GKN A;  3J7B A;  3PQ4 A;  1H7K A;  1M85 A;  4B5K A;  1QWL A;  1GWE A;  2J2M A;  3PQ2 A;  3PQ7 A;  1DGH A;  1IPH A;  7CAT A;  4ENQ A;  3E4W A;  5BV2 P;  1GGJ A;  1GGH A;  1QQW A;  4QOP A;  1TH3 A;  4ENV A;  2XQ1 A;  3E4Y A;  4B7F A;  1QWM A;  4BLC A;  1MQF A;  3TTW A;  1QWS A;  4ENT A;  1P81 A;  3RGS A;  4B40 A;  4B31 A;  4E37 A;  2XF2 A;  4B7H A;  3NWL A;  2IQF A;  3HB6 A;  4BIM A;  4BFL A;  1NM0 A;  1P7Z A;  1SI8 A;  3PQ5 A;  3TTX A;  4QOO A;  3P9S A;  1M7S A;  1CF9 A;  4QOM A;  4QOL A;  4ENP A;  1GWH A;  4ENW A;  1GG9 A;  1DGG A;  4AUE A;  1DGH B;  4ENS A;  4B7G A;  2ISA A;  4ENR A;  1SY7 A;  1GGK A;  3TTT A;  4AJ9 A;  4AUN A;  1A4E A;  1QF7 A;  3P9R A;  1GGE A;  1U5U A;  2IUF A;  1TGU A;  3PQ8 A;  3RGP A;  2A9E A;  1P7Y A;  4QON A;  4B2Y A;  3PQ6 A;  3VU3 A;  4AUM A;  1F4J A;  4ENU A;  3TTV A; 
#chains in the Genus database with same CATH homology
 4CAB A;  1GWF A;  3P9P A;  4B7A A;  2CAH A;  3TTU A;  1HBZ A;  4QOQ A;  3DY5 A;  4QOR A;  1GGF A;  3ZJ4 A;  4AUL A;  3P9Q A;  2CAG A;  3PQ3 A;  1H6N A;  3ZJ5 A;  1P80 A;  1E93 A;  3EJ6 A;  3PQ4 A;  1H7K A;  1M85 A;  4B5K A;  1QWL A;  1GWE A;  2J2M A;  3PQ2 A;  3PQ7 A;  1IPH A;  4ENQ A;  5BV2 P;  1GGJ A;  1GGH A;  4QOP A;  4ENV A;  2XQ1 A;  1QWM A;  1MQF A;  3TTW A;  1QWS A;  4ENT A;  1P81 A;  4B40 A;  4B31 A;  4E37 A;  2XF2 A;  2IQF A;  3HB6 A;  4BIM A;  4BFL A;  1NM0 A;  1P7Z A;  1SI8 A;  3PQ5 A;  3TTX A;  4QOO A;  3P9S A;  1M7S A;  1CF9 A;  4QOM A;  4QOL A;  4ENP A;  1GWH A;  4ENW A;  1GG9 A;  4AUE A;  4ENS A;  2ISA A;  4ENR A;  1SY7 A;  1GGK A;  3TTT A;  4AJ9 A;  4AUN A;  1A4E A;  1QF7 A;  3P9R A;  1GGE A;  1U5U A;  2IUF A;  3PQ8 A;  2A9E A;  1P7Y A;  4QON A;  4B2Y A;  3PQ6 A;  3VU3 A;  4AUM A;  1F4J A;  4ENU A;  3TTV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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