1GYHA

Structure of d158a cellvibrio cellulosa alpha-l-arabinanase mutant
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
318
structure length
318
Chain Sequence
GAKQVDVHDPVMTREGDTWYLFSTGPGITIYSSKDRVNWRYSDRAFATEPTWAKRVSPSFDGHLWAPDIYQHKGLFYLYYSVSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVWMSFGSFWGGLKLFKLNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILRKGDYYYLFASWGLCCRKGDSTYHLVVGRSKQVTGPYLDKTGRDMNQGGGSLLIKGNKRWVGLGHNSAYTWDGKDYLVLHAYEAADNYLQKLKILNLHWDGEGWPQVDEKELDSYISQRLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Cellvibrio cellulosa
publication title Cellovibrio Cellulosa Alpha-L-Arabinanase 43A Has a Novel Five-Blade Beta-Propeller Fold
pubmed doi rcsb
molecule keywords ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A
total genus 86
structure length 318
sequence length 318
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.2.1.55: Non-reducing end alpha-L-arabinofuranosidase.
pdb deposition date 2002-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 1gyhA00
4KC8A 2X8SA 5GLRA 4N4BA 3P2NA 3WN0A 3UGFA 2ADEA 2EXJA 5GLQA 5JOXA 3ZXKA 3D61A 3LIHA 4AK7A 3VSSA 3WPZA 3AKGA 4KC7A 3C2UA 3BYKA 2VDTA 3C7GA 5B6TA 3LDRA 3U75A 1ST8A 1YI7A 5FKBA 4AK5A 3WMYA 4UDGA 4FFFA 3R67A 5AYEA 3D5ZA 5GLMA 1WL7A 5GLPA 3ZXLA 3BYNA 4FFGA 1GYEB 1PT2A 3K1UA 4O8NA 3NQHA 3LIGA 2B4WA 2EXIA 3R4ZA 4O8PA 2ADDA 3QC2A 5GLLA 4AK6A 3U14A 3AKHA 3C7FA 4UDKE 3AKIA 5A7VB 4UDJA 3BYLA 3CU9A 3UGHA 4FFIA 5FMCA 4D47A 3WASA 5AYDA 5GLNA 4MLGA 2EXHA 1Y9MA 3C7HA 1Y9GA 3LEMA 4QQSA 3WPYA 1Y7BA 4ONZA 3KSTA 3VT1A 2OXBA 3VSFA 3WPUA 3QEFA 2X8TA 5A8CA 2XQRA 5GLOA 5GLKA 3RWKX 3LF7A 4U6BA 4FFHA 3OM5A 3WN2A 3KF5A 3D5YA 4U6DA 4O8OA 5FK8A 1GYHA 3VT0A 3VSZA 1W2TA 3UGGA 2AC1A 3LDKA 4UDKA 1GYDB 3TAWA 3LV4A 5FMDA 3QEDA 2AEYA 3SC7X 5A8DA 4KCBA 3OM7A 1YIFA 3QEEA 3WN1A 4PVAA 2QQWA 3QZ4A 3VSRA 1OYGA 3LFIA 3OM4A 5JOYA 3D60A 3OM2A 2QQVA 2AEZA 5AY9A 3PIGA 3ZXJA 5JOZA 5FKCA 2EXKA 3AKFA 4N2RA 5B6SA 5AYCA 4EQVA 1Y4WA 1UYPA 3C7OA 2YFRA 3R4YA 1VKDA 5FIXA 3WAUA 3WPVA 2YFSA 5FK7A 3VT2A 2YFTA 4COTA 3PIJA 5JOWA 4N2ZA 3KF3A 4KMIA 5ANNA 2X8FA 3BYJA 4N1IA 3WATA 5A7VA 4NOVA 1W18A 2QQUA 5FMBA 1YRZA 3C7EA 3OM6A 5FLWA 1UV4A 5C0PA 3WMZA 4UDIA 4PVIA 4KCAA
chains in the Genus database with same CATH superfamily
4KC8A 2X8SA 5GLRA 4N4BA 3P2NA 3WN0A 3UGFA 2ADEA 2EXJA 5GLQA 5JOXA 3ZXKA 3D61A 3LIHA 4AK7A 3VSSA 3WPZA 3AKGA 4KC7A 3C2UA 3BYKA 2VDTA 3C7GA 5B6TA 3LDRA 3U75A 1ST8A 1YI7A 5FKBA 4AK5A 3WMYA 4UDGA 4FFFA 3R67A 5AYEA 3D5ZA 5GLMA 1WL7A 5GLPA 3ZXLA 3BYNA 4FFGA 1GYEB 1PT2A 3K1UA 4O8NA 3NQHA 3LIGA 2B4WA 2EXIA 3R4ZA 4O8PA 2ADDA 3QC2A 5GLLA 4AK6A 3U14A 3AKHA 3C7FA 4UDKE 3AKIA 5A7VB 4UDJA 3BYLA 3CU9A 3UGHA 4FFIA 5FMCA 4D47A 3WASA 5AYDA 5GLNA 4MLGA 2EXHA 1Y9MA 1TL2A 3C7HA 1Y9GA 3LEMA 4QQSA 3WPYA 1Y7BA 4ONZA 3KSTA 3VT1A 2OXBA 3VSFA 3WPUA 3QEFA 2X8TA 5A8CA 2XQRA 5GLOA 5GLKA 3RWKX 3LF7A 4U6BA 4FFHA 3OM5A 3WN2A 3KF5A 3D5YA 4U6DA 4O8OA 5FK8A 1GYHA 3VT0A 3VSZA 1W2TA 3UGGA 2AC1A 3LDKA 4UDKA 1GYDB 3TAWA 3LV4A 5FMDA 3QEDA 2AEYA 3SC7X 5A8DA 4KCBA 3OM7A 1YIFA 3QEEA 5C2MA 3WN1A 4PVAA 2QQWA 3QZ4A 3VSRA 1OYGA 3LFIA 3OM4A 5JOYA 3D60A 2QQVA 2AEZA 3OM2A 5AY9A 3PIGA 3ZXJA 5JOZA 5FKCA 2EXKA 3AKFA 4N2RA 5B6SA 5AYCA 4EQVA 1Y4WA 1UYPA 3C7OA 2YFRA 3R4YA 1VKDA 5FIXA 3WAUA 3WPVA 2YFSA 5FK7A 3VT2A 2YFTA 4COTA 3PIJA 5JOWA 4N2ZA 3KF3A 4KMIA 5ANNA 2X8FA 3BYJA 4N1IA 3WATA 5A7VA 4NOVA 1W18A 2QQUA 5FMBA 1YRZA 3C7EA 3OM6A 5FLWA 1UV4A 5C0PA 3WMZA 4UDIA 4PVIA 4KCAA
chains in the Genus database with same CATH topology
4KC8A 2X8SA 5GLRA 4N4BA 3P2NA 3WN0A 3UGFA 2ADEA 2EXJA 5GLQA 5JOXA 3ZXKA 3D61A 3LIHA 4AK7A 3VSSA 3WPZA 3AKGA 4KC7A 3C2UA 3BYKA 2VDTA 3C7GA 5B6TA 3LDRA 3U75A 1ST8A 1YI7A 5FKBA 4AK5A 3WMYA 4UDGA 4FFFA 3R67A 5AYEA 3D5ZA 5GLMA 1WL7A 5GLPA 3ZXLA 3BYNA 4FFGA 1GYEB 1PT2A 3K1UA 4O8NA 3NQHA 3LIGA 2B4WA 2EXIA 3R4ZA 4O8PA 2ADDA 3QC2A 5GLLA 4AK6A 3U14A 3AKHA 3C7FA 4UDKE 3AKIA 5A7VB 4UDJA 3BYLA 3CU9A 3UGHA 4FFIA 5FMCA 4D47A 3WASA 5AYDA 5GLNA 4MLGA 2EXHA 1Y9MA 3C7HA 1Y9GA 3LEMA 4QQSA 3WPYA 1Y7BA 4ONZA 3KSTA 3VT1A 2OXBA 3VSFA 3WPUA 3QEFA 2X8TA 5A8CA 2XQRA 5GLOA 5GLKA 3RWKX 3LF7A 4U6BA 4FFHA 3OM5A 3WN2A 3KF5A 3D5YA 4U6DA 4O8OA 5FK8A 1GYHA 3VT0A 3VSZA 1W2TA 3UGGA 2AC1A 3LDKA 4UDKA 1GYDB 3TAWA 3LV4A 5FMDA 3QEDA 2AEYA 3SC7X 5A8DA 4KCBA 3OM7A 1YIFA 3QEEA 3WN1A 4PVAA 2QQWA 3QZ4A 3VSRA 1OYGA 3LFIA 3OM4A 5JOYA 3D60A 3OM2A 2QQVA 2AEZA 5AY9A 3PIGA 3ZXJA 5JOZA 5FKCA 2EXKA 3AKFA 4N2RA 5B6SA 5AYCA 4EQVA 1Y4WA 1UYPA 3C7OA 2YFRA 3R4YA 1VKDA 5FIXA 3WAUA 3WPVA 2YFSA 5FK7A 3VT2A 2YFTA 4COTA 3PIJA 5JOWA 4N2ZA 3KF3A 4KMIA 5ANNA 2X8FA 3BYJA 4N1IA 3WATA 5A7VA 4NOVA 1W18A 2QQUA 5FMBA 1YRZA 3C7EA 3OM6A 5FLWA 1UV4A 5C0PA 3WMZA 4UDIA 4PVIA 4KCAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KC8 A;  2X8S A;  5GLR A;  4N4B A;  3P2N A;  3WN0 A;  3UGF A;  2ADE A;  2EXJ A;  5GLQ A;  5JOX A;  3ZXK A;  3D61 A;  3LIH A;  4AK7 A;  3VSS A;  3WPZ A;  3AKG A;  4KC7 A;  3C2U A;  3BYK A;  2VDT A;  3C7G A;  5B6T A;  3LDR A;  3U75 A;  1ST8 A;  1YI7 A;  5FKB A;  4AK5 A;  3WMY A;  4UDG A;  4FFF A;  3R67 A;  5AYE A;  3D5Z A;  5GLM A;  1WL7 A;  5GLP A;  3ZXL A;  3BYN A;  4FFG A;  1GYE B;  1PT2 A;  3K1U A;  4O8N A;  3NQH A;  3LIG A;  2B4W A;  2EXI A;  3R4Z A;  4O8P A;  2ADD A;  3QC2 A;  5GLL A;  4AK6 A;  3U14 A;  3AKH A;  3C7F A;  4UDK E;  3AKI A;  5A7V B;  4UDJ A;  3BYL A;  3CU9 A;  3UGH A;  4FFI A;  5FMC A;  4D47 A;  3WAS A;  5AYD A;  5GLN A;  4MLG A;  2EXH A;  1Y9M A;  3C7H A;  1Y9G A;  3LEM A;  4QQS A;  3WPY A;  1Y7B A;  4ONZ A;  3KST A;  3VT1 A;  2OXB A;  3VSF A;  3WPU A;  3QEF A;  2X8T A;  5A8C A;  2XQR A;  5GLO A;  5GLK A;  3RWK X;  3LF7 A;  4U6B A;  4FFH A;  3OM5 A;  3WN2 A;  3KF5 A;  3D5Y A;  4U6D A;  4O8O A;  5FK8 A;  1GYH A;  3VT0 A;  3VSZ A;  1W2T A;  3UGG A;  2AC1 A;  3LDK A;  4UDK A;  1GYD B;  3TAW A;  3LV4 A;  5FMD A;  3QED A;  2AEY A;  3SC7 X;  5A8D A;  4KCB A;  3OM7 A;  1YIF A;  3QEE A;  3WN1 A;  4PVA A;  2QQW A;  3QZ4 A;  3VSR A;  1OYG A;  3LFI A;  3OM4 A;  5JOY A;  3D60 A;  3OM2 A;  2QQV A;  2AEZ A;  5AY9 A;  3PIG A;  3ZXJ A;  5JOZ A;  5FKC A;  2EXK A;  3AKF A;  4N2R A;  5B6S A;  5AYC A;  4EQV A;  1Y4W A;  1UYP A;  3C7O A;  2YFR A;  3R4Y A;  1VKD A;  5FIX A;  3WAU A;  3WPV A;  2YFS A;  5FK7 A;  3VT2 A;  2YFT A;  4COT A;  3PIJ A;  5JOW A;  4N2Z A;  3KF3 A;  4KMI A;  5ANN A;  2X8F A;  3BYJ A;  4N1I A;  3WAT A;  5A7V A;  4NOV A;  1W18 A;  2QQU A;  5FMB A;  1YRZ A;  3C7E A;  3OM6 A;  5FLW A;  1UV4 A;  5C0P A;  3WMZ A;  4UDI A;  4PVI A;  4KCA A; 
#chains in the Genus database with same CATH topology
 4KC8 A;  2X8S A;  5GLR A;  4N4B A;  3P2N A;  3WN0 A;  3UGF A;  2ADE A;  2EXJ A;  5GLQ A;  5JOX A;  3ZXK A;  3D61 A;  3LIH A;  4AK7 A;  3VSS A;  3WPZ A;  3AKG A;  4KC7 A;  3C2U A;  3BYK A;  2VDT A;  3C7G A;  5B6T A;  3LDR A;  3U75 A;  1ST8 A;  1YI7 A;  5FKB A;  4AK5 A;  3WMY A;  4UDG A;  4FFF A;  3R67 A;  5AYE A;  3D5Z A;  5GLM A;  1WL7 A;  5GLP A;  3ZXL A;  3BYN A;  4FFG A;  1GYE B;  1PT2 A;  3K1U A;  4O8N A;  3NQH A;  3LIG A;  2B4W A;  2EXI A;  3R4Z A;  4O8P A;  2ADD A;  3QC2 A;  5GLL A;  4AK6 A;  3U14 A;  3AKH A;  3C7F A;  4UDK E;  3AKI A;  5A7V B;  4UDJ A;  3BYL A;  3CU9 A;  3UGH A;  4FFI A;  5FMC A;  4D47 A;  3WAS A;  5AYD A;  5GLN A;  4MLG A;  2EXH A;  1Y9M A;  1TL2 A;  3C7H A;  1Y9G A;  3LEM A;  4QQS A;  3WPY A;  1Y7B A;  4ONZ A;  3KST A;  3VT1 A;  2OXB A;  3VSF A;  3WPU A;  3QEF A;  2X8T A;  5A8C A;  2XQR A;  5GLO A;  5GLK A;  3RWK X;  3LF7 A;  4U6B A;  4FFH A;  3OM5 A;  3WN2 A;  3KF5 A;  3D5Y A;  4U6D A;  4O8O A;  5FK8 A;  1GYH A;  3VT0 A;  3VSZ A;  1W2T A;  3UGG A;  2AC1 A;  3LDK A;  4UDK A;  1GYD B;  3TAW A;  3LV4 A;  5FMD A;  3QED A;  2AEY A;  3SC7 X;  5A8D A;  4KCB A;  3OM7 A;  1YIF A;  3QEE A;  5C2M A;  3WN1 A;  4PVA A;  2QQW A;  3QZ4 A;  3VSR A;  1OYG A;  3LFI A;  3OM4 A;  5JOY A;  3D60 A;  2QQV A;  2AEZ A;  3OM2 A;  5AY9 A;  3PIG A;  3ZXJ A;  5JOZ A;  5FKC A;  2EXK A;  3AKF A;  4N2R A;  5B6S A;  5AYC A;  4EQV A;  1Y4W A;  1UYP A;  3C7O A;  2YFR A;  3R4Y A;  1VKD A;  5FIX A;  3WAU A;  3WPV A;  2YFS A;  5FK7 A;  3VT2 A;  2YFT A;  4COT A;  3PIJ A;  5JOW A;  4N2Z A;  3KF3 A;  4KMI A;  5ANN A;  2X8F A;  3BYJ A;  4N1I A;  3WAT A;  5A7V A;  4NOV A;  1W18 A;  2QQU A;  5FMB A;  1YRZ A;  3C7E A;  3OM6 A;  5FLW A;  1UV4 A;  5C0P A;  3WMZ A;  4UDI A;  4PVI A;  4KCA A; 
#chains in the Genus database with same CATH homology
 4KC8 A;  2X8S A;  5GLR A;  4N4B A;  3P2N A;  3WN0 A;  3UGF A;  2ADE A;  2EXJ A;  5GLQ A;  5JOX A;  3ZXK A;  3D61 A;  3LIH A;  4AK7 A;  3VSS A;  3WPZ A;  3AKG A;  4KC7 A;  3C2U A;  3BYK A;  2VDT A;  3C7G A;  5B6T A;  3LDR A;  3U75 A;  1ST8 A;  1YI7 A;  5FKB A;  4AK5 A;  3WMY A;  4UDG A;  4FFF A;  3R67 A;  5AYE A;  3D5Z A;  5GLM A;  1WL7 A;  5GLP A;  3ZXL A;  3BYN A;  4FFG A;  1GYE B;  1PT2 A;  3K1U A;  4O8N A;  3NQH A;  3LIG A;  2B4W A;  2EXI A;  3R4Z A;  4O8P A;  2ADD A;  3QC2 A;  5GLL A;  4AK6 A;  3U14 A;  3AKH A;  3C7F A;  4UDK E;  3AKI A;  5A7V B;  4UDJ A;  3BYL A;  3CU9 A;  3UGH A;  4FFI A;  5FMC A;  4D47 A;  3WAS A;  5AYD A;  5GLN A;  4MLG A;  2EXH A;  1Y9M A;  3C7H A;  1Y9G A;  3LEM A;  4QQS A;  3WPY A;  1Y7B A;  4ONZ A;  3KST A;  3VT1 A;  2OXB A;  3VSF A;  3WPU A;  3QEF A;  2X8T A;  5A8C A;  2XQR A;  5GLO A;  5GLK A;  3RWK X;  3LF7 A;  4U6B A;  4FFH A;  3OM5 A;  3WN2 A;  3KF5 A;  3D5Y A;  4U6D A;  4O8O A;  5FK8 A;  1GYH A;  3VT0 A;  3VSZ A;  1W2T A;  3UGG A;  2AC1 A;  3LDK A;  4UDK A;  1GYD B;  3TAW A;  3LV4 A;  5FMD A;  3QED A;  2AEY A;  3SC7 X;  5A8D A;  4KCB A;  3OM7 A;  1YIF A;  3QEE A;  3WN1 A;  4PVA A;  2QQW A;  3QZ4 A;  3VSR A;  1OYG A;  3LFI A;  3OM4 A;  5JOY A;  3D60 A;  3OM2 A;  2QQV A;  2AEZ A;  5AY9 A;  3PIG A;  3ZXJ A;  5JOZ A;  5FKC A;  2EXK A;  3AKF A;  4N2R A;  5B6S A;  5AYC A;  4EQV A;  1Y4W A;  1UYP A;  3C7O A;  2YFR A;  3R4Y A;  1VKD A;  5FIX A;  3WAU A;  3WPV A;  2YFS A;  5FK7 A;  3VT2 A;  2YFT A;  4COT A;  3PIJ A;  5JOW A;  4N2Z A;  3KF3 A;  4KMI A;  5ANN A;  2X8F A;  3BYJ A;  4N1I A;  3WAT A;  5A7V A;  4NOV A;  1W18 A;  2QQU A;  5FMB A;  1YRZ A;  3C7E A;  3OM6 A;  5FLW A;  1UV4 A;  5C0P A;  3WMZ A;  4UDI A;  4PVI A;  4KCA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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