1GYOA

Crystal structure of the di-tetraheme cytochrome c3 from desulfovibrio gigas at 1.2 angstrom resolution
Total Genus 18
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
106
structure length
106
Chain Sequence
LDVPCKVVITAPEGEDPHPRFGKVEMSHAKHRNVSCVSCHHMFDGCGDFQKCADCHIDRDDRSYERGFYKAWHSESEISCRGCHKAMKAKNEQTGPIGCLQGCHEA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Electron transport
molecule keywords CYTOCHROME C3, A DIMERIC CLASS III C-TYPE CYTOCHROME
publication title Structure of Dimeric Cytochrome C3 from Desulfovibrio Gigas at 1.2 A Resolution
pubmed doi rcsb
total genus 18
structure length 106
sequence length 106
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02085 Cytochrom_CIII Class III cytochrome C family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 1gyoA00
2CTHA 2EWKA 3OV0A 1I77A 1QN1A 1F22A 1H29A 1GM4A 1EHJA 1GYOA 2BPNA 1WR5A 2CDVA 1QN0A 2KMYA 1NEWA 2BQ4A 1MDVA 2E84A 2FFNA 3SJ4X 3CARA 4HBFA 1GMBA 1L3OA 1J0PA 4HC3A 3BXUA 1UPDA 4HB8A 2MZ9A 1J0OA 3SJ1X 1RWJA 1KWJA 19HCA 3H34A 1HH5A 2LDOA 4HDLA 3CAOA 2A3PA 2N91A 4HAJA 3H4NA 1OS6A 1W7OA 3SJ0X 1IT1A 2YYXA 2LZZA 1UP9A 3CYRA 3OUEA 2EWIA 2Z47A 1Z1NX 2YYWA 1A2IA 1AQEA 1OFYA 3SELX 1WADA 2CY3A 2CYMA 2KSUA 2YXCA 2EWUA 1CZJA 2CVCA 3OUQA 2A3MA 1DUWA 1OFWA 4HB6A 1LM2A 3H33A 1GWSA
chains in the Genus database with same CATH superfamily
2CTHA 2EWKA 3OV0A 1I77A 1QN1A 1F22A 1H29A 1GM4A 1EHJA 1GYOA 2BPNA 1WR5A 2CDVA 1QN0A 2KMYA 1NEWA 2BQ4A 1MDVA 2E84A 2FFNA 3SJ4X 3CARA 4HBFA 1GMBA 1L3OA 1J0PA 4HC3A 3BXUA 1UPDA 4HB8A 2MZ9A 1J0OA 3SJ1X 1RWJA 1KWJA 19HCA 3H34A 1HH5A 2LDOA 4HDLA 3CAOA 2A3PA 2N91A 4HAJA 3H4NA 1OS6A 1W7OA 3SJ0X 1IT1A 2YYXA 2LZZA 1UP9A 3CYRA 3OUEA 2EWIA 2Z47A 1Z1NX 2YYWA 1A2IA 1AQEA 1OFYA 3SELX 1WADA 2CY3A 2CYMA 2KSUA 2YXCA 2EWUA 1CZJA 2CVCA 3OUQA 2A3MA 1DUWA 1OFWA 4HB6A 1LM2A 3H33A 1GWSA
chains in the Genus database with same CATH topology
2CTHA 2EWKA 3OV0A 1I77A 1QN1A 1F22A 1H29A 1GM4A 1EHJA 1GYOA 2BPNA 1WR5A 2CDVA 1QN0A 2KMYA 1NEWA 2BQ4A 1MDVA 2E84A 2FFNA 3SJ4X 3CARA 4HBFA 1GMBA 1L3OA 1J0PA 4HC3A 3BXUA 1UPDA 4HB8A 2MZ9A 1J0OA 3SJ1X 1RWJA 1KWJA 19HCA 3H34A 1HH5A 2LDOA 4HDLA 3CAOA 2A3PA 2N91A 4HAJA 3H4NA 1OS6A 1W7OA 3SJ0X 1IT1A 2YYXA 2LZZA 1UP9A 3CYRA 3OUEA 2EWIA 2Z47A 1Z1NX 2YYWA 1A2IA 1AQEA 1OFYA 3SELX 1WADA 2CY3A 2CYMA 2KSUA 2YXCA 2EWUA 1CZJA 2CVCA 3OUQA 2A3MA 1DUWA 1OFWA 4HB6A 1LM2A 3H33A 1GWSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CTH A;  2EWK A;  3OV0 A;  1I77 A;  1QN1 A;  1F22 A;  1H29 A;  1GM4 A;  1EHJ A;  1GYO A;  2BPN A;  1WR5 A;  2CDV A;  1QN0 A;  2KMY A;  1NEW A;  2BQ4 A;  1MDV A;  2E84 A;  2FFN A;  3SJ4 X;  3CAR A;  4HBF A;  1GMB A;  1L3O A;  1J0P A;  4HC3 A;  3BXU A;  1UPD A;  4HB8 A;  2MZ9 A;  1J0O A;  3SJ1 X;  1RWJ A;  1KWJ A;  19HC A;  3H34 A;  1HH5 A;  2LDO A;  4HDL A;  3CAO A;  2A3P A;  2N91 A;  4HAJ A;  3H4N A;  1OS6 A;  1W7O A;  3SJ0 X;  1IT1 A;  2YYX A;  2LZZ A;  1UP9 A;  3CYR A;  3OUE A;  2EWI A;  2Z47 A;  1Z1N X;  2YYW A;  1A2I A;  1AQE A;  1OFY A;  3SEL X;  1WAD A;  2CY3 A;  2CYM A;  2KSU A;  2YXC A;  2EWU A;  1CZJ A;  2CVC A;  3OUQ A;  2A3M A;  1DUW A;  1OFW A;  4HB6 A;  1LM2 A;  3H33 A;  1GWS A; 
#chains in the Genus database with same CATH topology
 2CTH A;  2EWK A;  3OV0 A;  1I77 A;  1QN1 A;  1F22 A;  1H29 A;  1GM4 A;  1EHJ A;  1GYO A;  2BPN A;  1WR5 A;  2CDV A;  1QN0 A;  2KMY A;  1NEW A;  2BQ4 A;  1MDV A;  2E84 A;  2FFN A;  3SJ4 X;  3CAR A;  4HBF A;  1GMB A;  1L3O A;  1J0P A;  4HC3 A;  3BXU A;  1UPD A;  4HB8 A;  2MZ9 A;  1J0O A;  3SJ1 X;  1RWJ A;  1KWJ A;  19HC A;  3H34 A;  1HH5 A;  2LDO A;  4HDL A;  3CAO A;  2A3P A;  2N91 A;  4HAJ A;  3H4N A;  1OS6 A;  1W7O A;  3SJ0 X;  1IT1 A;  2YYX A;  2LZZ A;  1UP9 A;  3CYR A;  3OUE A;  2EWI A;  2Z47 A;  1Z1N X;  2YYW A;  1A2I A;  1AQE A;  1OFY A;  3SEL X;  1WAD A;  2CY3 A;  2CYM A;  2KSU A;  2YXC A;  2EWU A;  1CZJ A;  2CVC A;  3OUQ A;  2A3M A;  1DUW A;  1OFW A;  4HB6 A;  1LM2 A;  3H33 A;  1GWS A; 
#chains in the Genus database with same CATH homology
 2CTH A;  2EWK A;  3OV0 A;  1I77 A;  1QN1 A;  1F22 A;  1H29 A;  1GM4 A;  1EHJ A;  1GYO A;  2BPN A;  1WR5 A;  2CDV A;  1QN0 A;  2KMY A;  1NEW A;  2BQ4 A;  1MDV A;  2E84 A;  2FFN A;  3SJ4 X;  3CAR A;  4HBF A;  1GMB A;  1L3O A;  1J0P A;  4HC3 A;  3BXU A;  1UPD A;  4HB8 A;  2MZ9 A;  1J0O A;  3SJ1 X;  1RWJ A;  1KWJ A;  19HC A;  3H34 A;  1HH5 A;  2LDO A;  4HDL A;  3CAO A;  2A3P A;  2N91 A;  4HAJ A;  3H4N A;  1OS6 A;  1W7O A;  3SJ0 X;  1IT1 A;  2YYX A;  2LZZ A;  1UP9 A;  3CYR A;  3OUE A;  2EWI A;  2Z47 A;  1Z1N X;  2YYW A;  1A2I A;  1AQE A;  1OFY A;  3SEL X;  1WAD A;  2CY3 A;  2CYM A;  2KSU A;  2YXC A;  2EWU A;  1CZJ A;  2CVC A;  3OUQ A;  2A3M A;  1DUW A;  1OFW A;  4HB6 A;  1LM2 A;  3H33 A;  1GWS A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...