1GZFA

Structure of the clostridium botulinum c3 exoenzyme (wild-type) in complex with nad
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
203
structure length
203
Chain Sequence
TYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords MONO-ADP-RIBOSYLTRANSFERASE C3
publication title Nad Binding Induces Conformational Changes in Rho Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme
pubmed doi rcsb
source organism Clostridium botulinum
total genus 66
structure length 203
sequence length 203
chains with identical sequence B, C, D
ec nomenclature ec 2.4.2.-:
pdb deposition date 2002-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1gzfA00
1J7NA 4H0TA 1UZIA 2C89A 1QS2A 2C8HA 2J3XA 4XSHB 2C8EE 2A78B 1GZEA 4PKQA 5H04A 4H0XA 5H03A 2GWLA 4PKRA 4FK7A 2C8DA 1JKYA 4XM7A 1R4BA 1OJZA 1OJQA 1R45A 4ELNA 1GIQA 5D1SA 1PWPA 1YQYA 2A9KB 4PKSA 1OG4A 1ZXVA 4FXQA 1GIRA 1GXYA 3NTSA 4XSGB 4XM6A 1QS1A 1OG1A 5D1TA 1G24A 2GWMA 3U0JA 5BWMB 1GZFA 2WN8A 1OG3A 4GF1A 4TR5A 4XM8A 1GXZA 1GY0A 2C8BX 2WN5A 5DZQA 4PKVA 5GTTA 1PWQA 4GY2A 2J3VA 1PWWA 3BW8A 4WF6A 2C8AA 2WN4A 1PWUA 2J3ZA 4DV8A 2C8FE 4PKWA 4PKUA 5D1UA 4H0YA 4H03A 2WN7A 1PWVA 4FMLA 2BOVB 2C8GA 4PKTA 2C8CA 4H0VA 3BUZA 2WN6A
chains in the Genus database with same CATH superfamily
1J7NA 4H0TA 1UZIA 2C89A 1QS2A 2C8HA 2J3XA 4XSHB 2C8EE 2A78B 1GZEA 4PKQA 5H04A 4H0XA 5H03A 2GWLA 4PKRA 4FK7A 2C8DA 1JKYA 4XM7A 1R4BA 1OJZA 1OJQA 1R45A 4ELNA 1GIQA 5D1SA 1PWPA 1YQYA 2A9KB 4PKSA 1OG4A 1ZXVA 4FXQA 1GIRA 1GXYA 3NTSA 4XSGB 4XM6A 1QS1A 1OG1A 5D1TA 1G24A 2GWMA 3U0JA 5BWMB 1GZFA 2WN8A 1OG3A 4GF1A 4TR5A 4XM8A 1GXZA 1GY0A 2C8BX 2WN5A 5DZQA 4PKVA 5GTTA 1PWQA 4GY2A 2J3VA 1PWWA 3BW8A 4WF6A 2C8AA 2WN4A 1PWUA 2J3ZA 4DV8A 2C8FE 4PKWA 4PKUA 5D1UA 4H0YA 4H03A 2WN7A 1PWVA 4FMLA 2BOVB 2C8GA 4PKTA 2C8CA 4H0VA 3BUZA 2WN6A
chains in the Genus database with same CATH topology
1J7NA 4H0TA 1UZIA 2C89A 1QS2A 2C8HA 2J3XA 4XSHB 2C8EE 2A78B 1GZEA 4PKQA 5H04A 4H0XA 5H03A 2GWLA 4PKRA 4FK7A 2C8DA 1JKYA 4XM7A 1R4BA 1OJZA 1OJQA 1R45A 4ELNA 1GIQA 5D1SA 1PWPA 1YQYA 2A9KB 4PKSA 1OG4A 1ZXVA 4FXQA 1GIRA 1GXYA 3NTSA 4XSGB 4XM6A 1QS1A 1OG1A 5D1TA 1G24A 2GWMA 3U0JA 5BWMB 1GZFA 2WN8A 1OG3A 4GF1A 4TR5A 4XM8A 1GXZA 1GY0A 2C8BX 2WN5A 5DZQA 4PKVA 5GTTA 1PWQA 4GY2A 2J3VA 1PWWA 3BW8A 4WF6A 2C8AA 2WN4A 1PWUA 2J3ZA 4DV8A 2C8FE 4PKWA 4PKUA 5D1UA 4H0YA 4H03A 2WN7A 1PWVA 4FMLA 2BOVB 2C8GA 4PKTA 2C8CA 4H0VA 3BUZA 2WN6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J7N A;  4H0T A;  1UZI A;  2C89 A;  1QS2 A;  2C8H A;  2J3X A;  4XSH B;  2C8E E;  2A78 B;  1GZE A;  4PKQ A;  5H04 A;  4H0X A;  5H03 A;  2GWL A;  4PKR A;  4FK7 A;  2C8D A;  1JKY A;  4XM7 A;  1R4B A;  1OJZ A;  1OJQ A;  1R45 A;  4ELN A;  1GIQ A;  5D1S A;  1PWP A;  1YQY A;  2A9K B;  4PKS A;  1OG4 A;  1ZXV A;  4FXQ A;  1GIR A;  1GXY A;  3NTS A;  4XSG B;  4XM6 A;  1QS1 A;  1OG1 A;  5D1T A;  1G24 A;  2GWM A;  3U0J A;  5BWM B;  1GZF A;  2WN8 A;  1OG3 A;  4GF1 A;  4TR5 A;  4XM8 A;  1GXZ A;  1GY0 A;  2C8B X;  2WN5 A;  5DZQ A;  4PKV A;  5GTT A;  1PWQ A;  4GY2 A;  2J3V A;  1PWW A;  3BW8 A;  4WF6 A;  2C8A A;  2WN4 A;  1PWU A;  2J3Z A;  4DV8 A;  2C8F E;  4PKW A;  4PKU A;  5D1U A;  4H0Y A;  4H03 A;  2WN7 A;  1PWV A;  4FML A;  2BOV B;  2C8G A;  4PKT A;  2C8C A;  4H0V A;  3BUZ A;  2WN6 A; 
#chains in the Genus database with same CATH topology
 1J7N A;  4H0T A;  1UZI A;  2C89 A;  1QS2 A;  2C8H A;  2J3X A;  4XSH B;  2C8E E;  2A78 B;  1GZE A;  4PKQ A;  5H04 A;  4H0X A;  5H03 A;  2GWL A;  4PKR A;  4FK7 A;  2C8D A;  1JKY A;  4XM7 A;  1R4B A;  1OJZ A;  1OJQ A;  1R45 A;  4ELN A;  1GIQ A;  5D1S A;  1PWP A;  1YQY A;  2A9K B;  4PKS A;  1OG4 A;  1ZXV A;  4FXQ A;  1GIR A;  1GXY A;  3NTS A;  4XSG B;  4XM6 A;  1QS1 A;  1OG1 A;  5D1T A;  1G24 A;  2GWM A;  3U0J A;  5BWM B;  1GZF A;  2WN8 A;  1OG3 A;  4GF1 A;  4TR5 A;  4XM8 A;  1GXZ A;  1GY0 A;  2C8B X;  2WN5 A;  5DZQ A;  4PKV A;  5GTT A;  1PWQ A;  4GY2 A;  2J3V A;  1PWW A;  3BW8 A;  4WF6 A;  2C8A A;  2WN4 A;  1PWU A;  2J3Z A;  4DV8 A;  2C8F E;  4PKW A;  4PKU A;  5D1U A;  4H0Y A;  4H03 A;  2WN7 A;  1PWV A;  4FML A;  2BOV B;  2C8G A;  4PKT A;  2C8C A;  4H0V A;  3BUZ A;  2WN6 A; 
#chains in the Genus database with same CATH homology
 1J7N A;  4H0T A;  1UZI A;  2C89 A;  1QS2 A;  2C8H A;  2J3X A;  4XSH B;  2C8E E;  2A78 B;  1GZE A;  4PKQ A;  5H04 A;  4H0X A;  5H03 A;  2GWL A;  4PKR A;  4FK7 A;  2C8D A;  1JKY A;  4XM7 A;  1R4B A;  1OJZ A;  1OJQ A;  1R45 A;  4ELN A;  1GIQ A;  5D1S A;  1PWP A;  1YQY A;  2A9K B;  4PKS A;  1OG4 A;  1ZXV A;  4FXQ A;  1GIR A;  1GXY A;  3NTS A;  4XSG B;  4XM6 A;  1QS1 A;  1OG1 A;  5D1T A;  1G24 A;  2GWM A;  3U0J A;  5BWM B;  1GZF A;  2WN8 A;  1OG3 A;  4GF1 A;  4TR5 A;  4XM8 A;  1GXZ A;  1GY0 A;  2C8B X;  2WN5 A;  5DZQ A;  4PKV A;  5GTT A;  1PWQ A;  4GY2 A;  2J3V A;  1PWW A;  3BW8 A;  4WF6 A;  2C8A A;  2WN4 A;  1PWU A;  2J3Z A;  4DV8 A;  2C8F E;  4PKW A;  4PKU A;  5D1U A;  4H0Y A;  4H03 A;  2WN7 A;  1PWV A;  4FML A;  2BOV B;  2C8G A;  4PKT A;  2C8C A;  4H0V A;  3BUZ A;  2WN6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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