1H0YA

Structure of alba: an archaeal chromatin protein modulated by acetylation
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
89
structure length
89
Chain Sequence
SNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQDGRQSRVSTIEIAIRKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding
molecule keywords DNA BINDING PROTEIN SSO10B
publication title Structure of Alba: An Archaeal Chromatin Protein Modulated by Acetylation
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 20
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2002-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01918 Alba Alba
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.20 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Alba-like domain 1h0yA00
1NFJA 1VM0A 2H9UA 3IABB 3U6YA 1NFHA 2EK0A 4Z9EA 1Y9XA 3TOEA 2Z7CA 1NH9A 1H0XA 3IABA 2EH1A 3WBMA 2BKYX 1H0YA 2A2YA 2Q3VA 1UDVA
chains in the Genus database with same CATH superfamily
4NZTM 4K88A 3P04A 3U6YA 4FBQA 4Z9EA 1NJ2A 1Y9XA 3QKBA 4NZRM 1NH9A 1H0XA 3VTHA 3IABA 2LXRA 1PAVA 4K87A 2L8YA 3ZIHA 3WBMA 4Q15A 3ZIIA 2BKYX 1H0YA 3LVJC 2Q3VA 1JO0A 2LN3A 4HVCA 1NJ1A 3T1IA 1XEZA 1HC7A 1JE3A 1NFHA 1H4TA 1NJ8A 2Z7CA 1II7A 4HVZA 1NJ6A 3TSPA 4WI1A 2EH1A 4YKEA 1S8EA 2M71A 4NCXA 3ZIGA 4OLFA 3DSCA 2A2YA 4FCXA 1H4SA 1VM0A 4K86A 2CRQA 1VR4A 3ZIEA 3TSQA 1NJ5A 3HZ7A 4FBKA 3IABB 3VTIA 2IFEA 4YDQA 4FBWA 4HD0A 1Y2IA 1JDQA 4EO0A 1NFJA 2GTCA 1LN4A 2H9UA 3DSDA 3IALA 1TIGA 2EK0A 3TOEA 4TWAA 1RQ8A 2P9BA 3LVKB 3TTDA 3TTCA 2Y1BA 3TTFA 3TSUA 1H4QA 1DCJA 1UDVA
chains in the Genus database with same CATH topology
1NFJA 1VM0A 2H9UA 3IABB 3U6YA 1NFHA 2EK0A 4Z9EA 1Y9XA 3TOEA 2Z7CA 1NH9A 1H0XA 3IABA 2EH1A 3WBMA 2BKYX 1H0YA 2A2YA 2Q3VA 1UDVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NFJ A;  1VM0 A;  2H9U A;  3IAB B;  3U6Y A;  1NFH A;  2EK0 A;  4Z9E A;  1Y9X A;  3TOE A;  2Z7C A;  1NH9 A;  1H0X A;  3IAB A;  2EH1 A;  3WBM A;  2BKY X;  1H0Y A;  2A2Y A;  2Q3V A;  1UDV A; 
#chains in the Genus database with same CATH topology
 4NZT M;  4K88 A;  3P04 A;  3U6Y A;  4FBQ A;  4Z9E A;  1NJ2 A;  1Y9X A;  3QKB A;  4NZR M;  1NH9 A;  1H0X A;  3VTH A;  3IAB A;  2LXR A;  1PAV A;  4K87 A;  2L8Y A;  3ZIH A;  3WBM A;  4Q15 A;  3ZII A;  2BKY X;  1H0Y A;  3LVJ C;  2Q3V A;  1JO0 A;  2LN3 A;  4HVC A;  1NJ1 A;  3T1I A;  1XEZ A;  1HC7 A;  1JE3 A;  1NFH A;  1H4T A;  1NJ8 A;  2Z7C A;  1II7 A;  4HVZ A;  1NJ6 A;  3TSP A;  4WI1 A;  2EH1 A;  4YKE A;  1S8E A;  2M71 A;  4NCX A;  3ZIG A;  4OLF A;  3DSC A;  2A2Y A;  4FCX A;  1H4S A;  1VM0 A;  4K86 A;  2CRQ A;  1VR4 A;  3ZIE A;  3TSQ A;  1NJ5 A;  3HZ7 A;  4FBK A;  3IAB B;  3VTI A;  2IFE A;  4YDQ A;  4FBW A;  4HD0 A;  1Y2I A;  1JDQ A;  4EO0 A;  1NFJ A;  2GTC A;  1LN4 A;  2H9U A;  3DSD A;  3IAL A;  1TIG A;  2EK0 A;  3TOE A;  4TWA A;  1RQ8 A;  2P9B A;  3LVK B;  3TTD A;  3TTC A;  2Y1B A;  3TTF A;  3TSU A;  1H4Q A;  1DCJ A;  1UDV A; 
#chains in the Genus database with same CATH homology
 1NFJ A;  1VM0 A;  2H9U A;  3IAB B;  3U6Y A;  1NFH A;  2EK0 A;  4Z9E A;  1Y9X A;  3TOE A;  2Z7C A;  1NH9 A;  1H0X A;  3IAB A;  2EH1 A;  3WBM A;  2BKY X;  1H0Y A;  2A2Y A;  2Q3V A;  1UDV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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