1H4JA

Methylobacterium extorquens methanol dehydrogenase d303e mutant
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
595
structure length
595
Chain Sequence
NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWEYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Methanol dehydrogenase [cytochrome c] subunit 1
publication title Site-Directed Mutagenesis and X-Ray Crystallography of the Pqq-Containing Quinoprotein Methanol Dehydrogenase and its Electron Acceptor, Cytochrome C(L)(,)
pubmed doi rcsb
source organism Methylobacterium extorquens
total genus 181
structure length 595
sequence length 595
chains with identical sequence C, E, G
ec nomenclature ec 1.1.2.7: Methanol dehydrogenase (cytochrome c).
pdb deposition date 2001-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01011 PQQ PQQ enzyme repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 1h4jA00
1KV9A 2D0VA 4CVCA 2AD6A 4TQOA 1H4IA 1YIQA 2AD8A 1W6SA 1H4JA 4AAHA 2AD7A 1G72A 1FLGA 1KB0A 4CVBA 4MH1A 1LRWA 4MAEA
chains in the Genus database with same CATH superfamily
3VJKA 1R9NA 4TQOA 3VJMA 4G1FA 2I3ZA 2QT9A 2RIPA 3D4LA 2BUCA 1HCMA 2OAEA 3W2TA 3CCBA 2G5PA 4N8EA 5T4FA 2HHAA 2RGUA 3NOXA 3SWWA 1HZUA 2AJ8A 1FLGA 1DY7A 4CVBA 3HABA 1AOQA 1Z68A 3OPMA 2AJCA 5T4BA 1R9MA 3VJLA 3KWFA 2GBGA 3Q8WA 2BGNA 2ECFA 1AOMA 3OC0A 1HJ3A 1TK3A 2GBFA 3KWJA 4KR0A 5J3JA 4FFWA 4J3JA 2I78A 2AD6A 1N90A 2BUAA 3WQHA 4DSAA 3F8SA 1H9YA 4WJLA 3H0CA 3EIOA 1QKSA 1YIQA 2QKYA 1PFQA 4JH0A 1H9XA 2BGRA 1J2EA 3BJMA 4AAHA 1GQ1A 2GBIA 1G72A 2JIDA 2OLEA 3G0DA 3O95A 4N8DA 1LRWA 2EEPA 1BL9A 4QZVA 1WCYA 5T4EA 4Q1VA 2G5TA 2G63A 1KV9A 3O9VA 4L72A 5I7UA 2OQIA 1E2RA 1XFDA 4FFVA 2IIVA 2BUBA 5LLSA 1NU6A 1X70A 2Z3WA 4LKOA 2AD8A 1W6SA 2FJPA 2IITA 1TKRA 1ORWA 1H4JA 1RWQA 2GBCA 2AD7A 3HACA 2QTBA 1NU8A 3SX4A 1KB0A 2QOEA 2P8SA 1GJQA 1N50A 2D5LA 1HJ4A 2OPHA 3G0GA 5ISMA 1ORVA 3G0CA 2Z3ZA 3Q0TA 2AJDA 1NNOA 1N15A 2D0VA 4CVCA 2I03A 2ONCA 2OGZA 3QBJA 2DCMA 4A5SA 1H4IA 4PNZA 4DTCA 2QJRA 1N1MA 2OAGA 4DSZA 1HJ5A 2AJBA 5KBYA 1NIRA 3CCCA 3C45A 2OQVA 1U8EA 1HZVA 5T4HA 1W1IA 3G0BA 4MH1A 1AOFA 4MAEA 3C43A 4PV7A 2AJLI
chains in the Genus database with same CATH topology
1KV9A 2D0VA 4CVCA 2AD6A 4TQOA 1H4IA 1YIQA 2AD8A 1W6SA 1H4JA 4AAHA 2AD7A 1G72A 1FLGA 1KB0A 4CVBA 4MH1A 1LRWA 4MAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KV9 A;  2D0V A;  4CVC A;  2AD6 A;  4TQO A;  1H4I A;  1YIQ A;  2AD8 A;  1W6S A;  1H4J A;  4AAH A;  2AD7 A;  1G72 A;  1FLG A;  1KB0 A;  4CVB A;  4MH1 A;  1LRW A;  4MAE A; 
#chains in the Genus database with same CATH topology
 3VJK A;  1R9N A;  4TQO A;  3VJM A;  4G1F A;  2I3Z A;  2QT9 A;  2RIP A;  3D4L A;  2BUC A;  1HCM A;  2OAE A;  3W2T A;  3CCB A;  2G5P A;  4N8E A;  5T4F A;  2HHA A;  2RGU A;  3NOX A;  3SWW A;  1HZU A;  2AJ8 A;  1FLG A;  1DY7 A;  4CVB A;  3HAB A;  1AOQ A;  1Z68 A;  3OPM A;  2AJC A;  5T4B A;  1R9M A;  3VJL A;  3KWF A;  2GBG A;  3Q8W A;  2BGN A;  2ECF A;  1AOM A;  3OC0 A;  1HJ3 A;  1TK3 A;  2GBF A;  3KWJ A;  4KR0 A;  5J3J A;  4FFW A;  4J3J A;  2I78 A;  2AD6 A;  1N90 A;  2BUA A;  3WQH A;  4DSA A;  3F8S A;  1H9Y A;  4WJL A;  3H0C A;  3EIO A;  1QKS A;  1YIQ A;  2QKY A;  1PFQ A;  4JH0 A;  1H9X A;  2BGR A;  1J2E A;  3BJM A;  4AAH A;  1GQ1 A;  2GBI A;  1G72 A;  2JID A;  2OLE A;  3G0D A;  3O95 A;  4N8D A;  1LRW A;  2EEP A;  1BL9 A;  4QZV A;  1WCY A;  5T4E A;  4Q1V A;  2G5T A;  2G63 A;  1KV9 A;  3O9V A;  4L72 A;  5I7U A;  2OQI A;  1E2R A;  1XFD A;  4FFV A;  2IIV A;  2BUB A;  5LLS A;  1NU6 A;  1X70 A;  2Z3W A;  4LKO A;  2AD8 A;  1W6S A;  2FJP A;  2IIT A;  1TKR A;  1ORW A;  1H4J A;  1RWQ A;  2GBC A;  2AD7 A;  3HAC A;  2QTB A;  1NU8 A;  3SX4 A;  1KB0 A;  2QOE A;  2P8S A;  1GJQ A;  1N50 A;  2D5L A;  1HJ4 A;  2OPH A;  3G0G A;  5ISM A;  1ORV A;  3G0C A;  2Z3Z A;  3Q0T A;  2AJD A;  1NNO A;  1N15 A;  2D0V A;  4CVC A;  2I03 A;  2ONC A;  2OGZ A;  3QBJ A;  2DCM A;  4A5S A;  1H4I A;  4PNZ A;  4DTC A;  2QJR A;  1N1M A;  2OAG A;  4DSZ A;  1HJ5 A;  2AJB A;  5KBY A;  1NIR A;  3CCC A;  3C45 A;  2OQV A;  1U8E A;  1HZV A;  5T4H A;  1W1I A;  3G0B A;  4MH1 A;  1AOF A;  4MAE A;  3C43 A;  4PV7 A;  2AJL I; 
#chains in the Genus database with same CATH homology
 1KV9 A;  2D0V A;  4CVC A;  2AD6 A;  4TQO A;  1H4I A;  1YIQ A;  2AD8 A;  1W6S A;  1H4J A;  4AAH A;  2AD7 A;  1G72 A;  1FLG A;  1KB0 A;  4CVB A;  4MH1 A;  1LRW A;  4MAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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