1H6NA

Formation of a tyrosyl radical intermediate in proteus mirabilis catalase by directed mutagenesis and consequences for nucleotide reactivity
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
476
structure length
475
Chain Sequence
b'KKLTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVHGYGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRDLFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQIDLFTKVHPEYGAGVEKAIKVLE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CATALASE
publication title High Resolution Structure and Biochemical Properties of a Recombinant Proteus Mirabilis Catalase Depleted in Iron.
pubmed doi rcsb
source organism Proteus mirabilis
molecule tags Oxidoreductase (h2o2 acceptor)
total genus 155
structure length 475
sequence length 476
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2001-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1h6nA00
1H7KA 1P80A 4ENTA 3PQ8A 4QONA 4B31A 2IQFA 2ISAA 4BFLA 1GWFA 1MQFA 3P9PA 3ZJ5A 3DY5A 3PQ5A 1GGKA 1M85A 4AUMA 3TTUA 1A4EA 4QORA 4AULA 3PQ2A 1GWEA 2A9EA 1GG9A 2CAHA 1NM0A 4QOLA 4QOPA 1QWMA 4QOQA 1E93A 5BV2P 4AUEA 3TTWA 1P7ZA 1GGHA 1SY7A 4ENVA 4AJ9A 4ENSA 2IUFA 4AUNA 3TTTA 4E37A 1H6NA 1QWLA 2J2MA 3VU3A 3PQ7A 1GWHA 1GGEA 4B40A 3TTVA 3PQ4A 3P9QA 1M7SA 4ENQA 1P7YA 3TTXA 1CF9A 4B7AA 1QF7A 4ENPA 4QOMA 3ZJ4A 3P9RA 3HB6A 3EJ6A 2XF2A 1HBZA 4QOOA 1QWSA 4ENUA 1F4JA 2XQ1A 1GGFA 1IPHA 4ENWA 1GGJA 1SI8A 4BIMA 3PQ3A 3PQ6A 4ENRA 1P81A 4B2YA 4B5KA 4CABA 1U5UA 3P9SA 2CAGA
chains in the Genus database with same CATH superfamily
7CATA 1H7KA 1P80A 4ENTA 8CATA 4BLCA 3PQ8A 3RGPA 4QONA 4B31A 2IQFA 2ISAA 4BFLA 1GWFA 1MQFA 3P9PA 3ZJ5A 3DY5A 3PQ5A 1GGKA 1M85A 4AUMA 3TTUA 1A4EA 4QORA 1TH4A 4AULA 1GWEA 3PQ2A 2A9EA 1GG9A 2CAHA 1NM0A 1DGBA 4QOLA 4QOPA 1QWMA 4QOQA 1E93A 5BV2P 4AUEA 3TTWA 1P7ZA 1GGHA 1SY7A 4ENVA 4AJ9A 4ENSA 2IUFA 4AUNA 3RGSA 3TTTA 4E37A 1H6NA 1QWLA 2J2MA 3VU3A 3PQ7A 1GWHA 1TGUA 1GGEA 4B40A 4B7FA 1QQWA 3TTVA 3PQ4A 3P9QA 1M7SA 4ENQA 1P7YA 3TTXA 1CF9A 4B7AA 1QF7A 4ENPA 4QOMA 3ZJ4A 3P9RA 3J7BA 1DGHB 1DGGA 3HB6A 3EJ6A 2XF2A 1HBZA 4QOOA 1QWSA 4B7GA 1DGFA 4ENUA 1F4JA 1TH2A 2XQ1A 1GGFA 3E4WA 3E4YA 1IPHA 1DGHA 3NWLA 4ENWA 1GGJA 1SI8A 4BIMA 3PQ3A 3PQ6A 4ENRA 1P81A 4B2YA 4B7HA 4B5KA 1TH3A 3RE8A 4CABA 1U5UA 3P9SA 2CAGA 5GKNA
chains in the Genus database with same CATH topology
1H7KA 1P80A 4ENTA 3PQ8A 4QONA 4B31A 2IQFA 2ISAA 4BFLA 1GWFA 1MQFA 3P9PA 3ZJ5A 3DY5A 3PQ5A 1GGKA 1M85A 4AUMA 3TTUA 1A4EA 4QORA 4AULA 3PQ2A 1GWEA 2A9EA 1GG9A 2CAHA 1NM0A 4QOLA 4QOPA 1QWMA 4QOQA 1E93A 5BV2P 4AUEA 3TTWA 1P7ZA 1GGHA 1SY7A 4ENVA 4AJ9A 4ENSA 2IUFA 4AUNA 3TTTA 4E37A 1H6NA 1QWLA 2J2MA 3VU3A 3PQ7A 1GWHA 1GGEA 4B40A 3TTVA 3PQ4A 3P9QA 1M7SA 4ENQA 1P7YA 3TTXA 1CF9A 4B7AA 1QF7A 4ENPA 4QOMA 3ZJ4A 3P9RA 3HB6A 3EJ6A 2XF2A 1HBZA 4QOOA 1QWSA 4ENUA 1F4JA 2XQ1A 1GGFA 1IPHA 4ENWA 1GGJA 1SI8A 4BIMA 3PQ3A 3PQ6A 4ENRA 1P81A 4B2YA 4B5KA 4CABA 1U5UA 3P9SA 2CAGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H7K A;  1P80 A;  4ENT A;  3PQ8 A;  4QON A;  4B31 A;  2IQF A;  2ISA A;  4BFL A;  1GWF A;  1MQF A;  3P9P A;  3ZJ5 A;  3DY5 A;  3PQ5 A;  1GGK A;  1M85 A;  4AUM A;  3TTU A;  1A4E A;  4QOR A;  4AUL A;  3PQ2 A;  1GWE A;  2A9E A;  1GG9 A;  2CAH A;  1NM0 A;  4QOL A;  4QOP A;  1QWM A;  4QOQ A;  1E93 A;  5BV2 P;  4AUE A;  3TTW A;  1P7Z A;  1GGH A;  1SY7 A;  4ENV A;  4AJ9 A;  4ENS A;  2IUF A;  4AUN A;  3TTT A;  4E37 A;  1H6N A;  1QWL A;  2J2M A;  3VU3 A;  3PQ7 A;  1GWH A;  1GGE A;  4B40 A;  3TTV A;  3PQ4 A;  3P9Q A;  1M7S A;  4ENQ A;  1P7Y A;  3TTX A;  1CF9 A;  4B7A A;  1QF7 A;  4ENP A;  4QOM A;  3ZJ4 A;  3P9R A;  3HB6 A;  3EJ6 A;  2XF2 A;  1HBZ A;  4QOO A;  1QWS A;  4ENU A;  1F4J A;  2XQ1 A;  1GGF A;  1IPH A;  4ENW A;  1GGJ A;  1SI8 A;  4BIM A;  3PQ3 A;  3PQ6 A;  4ENR A;  1P81 A;  4B2Y A;  4B5K A;  4CAB A;  1U5U A;  3P9S A;  2CAG A; 
#chains in the Genus database with same CATH topology
 7CAT A;  1H7K A;  1P80 A;  4ENT A;  8CAT A;  4BLC A;  3PQ8 A;  3RGP A;  4QON A;  4B31 A;  2IQF A;  2ISA A;  4BFL A;  1GWF A;  1MQF A;  3P9P A;  3ZJ5 A;  3DY5 A;  3PQ5 A;  1GGK A;  1M85 A;  4AUM A;  3TTU A;  1A4E A;  4QOR A;  1TH4 A;  4AUL A;  1GWE A;  3PQ2 A;  2A9E A;  1GG9 A;  2CAH A;  1NM0 A;  1DGB A;  4QOL A;  4QOP A;  1QWM A;  4QOQ A;  1E93 A;  5BV2 P;  4AUE A;  3TTW A;  1P7Z A;  1GGH A;  1SY7 A;  4ENV A;  4AJ9 A;  4ENS A;  2IUF A;  4AUN A;  3RGS A;  3TTT A;  4E37 A;  1H6N A;  1QWL A;  2J2M A;  3VU3 A;  3PQ7 A;  1GWH A;  1TGU A;  1GGE A;  4B40 A;  4B7F A;  1QQW A;  3TTV A;  3PQ4 A;  3P9Q A;  1M7S A;  4ENQ A;  1P7Y A;  3TTX A;  1CF9 A;  4B7A A;  1QF7 A;  4ENP A;  4QOM A;  3ZJ4 A;  3P9R A;  3J7B A;  1DGH B;  1DGG A;  3HB6 A;  3EJ6 A;  2XF2 A;  1HBZ A;  4QOO A;  1QWS A;  4B7G A;  1DGF A;  4ENU A;  1F4J A;  1TH2 A;  2XQ1 A;  1GGF A;  3E4W A;  3E4Y A;  1IPH A;  1DGH A;  3NWL A;  4ENW A;  1GGJ A;  1SI8 A;  4BIM A;  3PQ3 A;  3PQ6 A;  4ENR A;  1P81 A;  4B2Y A;  4B7H A;  4B5K A;  1TH3 A;  3RE8 A;  4CAB A;  1U5U A;  3P9S A;  2CAG A;  5GKN A; 
#chains in the Genus database with same CATH homology
 1H7K A;  1P80 A;  4ENT A;  3PQ8 A;  4QON A;  4B31 A;  2IQF A;  2ISA A;  4BFL A;  1GWF A;  1MQF A;  3P9P A;  3ZJ5 A;  3DY5 A;  3PQ5 A;  1GGK A;  1M85 A;  4AUM A;  3TTU A;  1A4E A;  4QOR A;  4AUL A;  3PQ2 A;  1GWE A;  2A9E A;  1GG9 A;  2CAH A;  1NM0 A;  4QOL A;  4QOP A;  1QWM A;  4QOQ A;  1E93 A;  5BV2 P;  4AUE A;  3TTW A;  1P7Z A;  1GGH A;  1SY7 A;  4ENV A;  4AJ9 A;  4ENS A;  2IUF A;  4AUN A;  3TTT A;  4E37 A;  1H6N A;  1QWL A;  2J2M A;  3VU3 A;  3PQ7 A;  1GWH A;  1GGE A;  4B40 A;  3TTV A;  3PQ4 A;  3P9Q A;  1M7S A;  4ENQ A;  1P7Y A;  3TTX A;  1CF9 A;  4B7A A;  1QF7 A;  4ENP A;  4QOM A;  3ZJ4 A;  3P9R A;  3HB6 A;  3EJ6 A;  2XF2 A;  1HBZ A;  4QOO A;  1QWS A;  4ENU A;  1F4J A;  2XQ1 A;  1GGF A;  1IPH A;  4ENW A;  1GGJ A;  1SI8 A;  4BIM A;  3PQ3 A;  3PQ6 A;  4ENR A;  1P81 A;  4B2Y A;  4B5K A;  4CAB A;  1U5U A;  3P9S A;  2CAG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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