1H80A

1,3-alpha-1,4-beta-d-galactose-4-sulfate- 3,6-anhydro-d-galactose-2-sulfate 4 galactohydrolase
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
464
structure length
433
Chain Sequence
VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSGCAQTPAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords IOTA-CARRAGEENASE
publication title The Iota-Carrageenase of Alteromonas Fortis. A Beta-Helix Fold-Containing Enzyme for the Degradation of a Highly Polyanionic Polysaccharide
pubmed doi rcsb
source organism Alteromonas sp. atcc43554
molecule tags Hydrolase
total genus 161
structure length 433
sequence length 464
chains with identical sequence B
ec nomenclature ec 3.2.1.157: Iota-carrageenase.
pdb deposition date 2001-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1h80A00
1RMGA 2O0WA 3EQNA 1IDJA 1RWRA 2BSPA 1IDKA 1BHEA 1JRGA 2NTQA 4OZYA 3ZSCA 4XMYA 4AVZA 4XQFA 2INUA 4NK6A 1O8FA 3ZPPA 3EQOA 4OJ6A 1IB4A 1O8LA 4XKVA 3GQ8A 1EE6A 1OGOX 2X6XA 2IQ7A 1O88A 4W8TA 2PECA 4YZ0A 2O1DA 2UVFA 3GRHA 1GQ8A 3VSUA 1NHCA 4PMHA 2NSTA 1DBOA 1DBGA 4XLHA 4C2LA 4MXNA 4XKWA 2X6YA 4U49A 2NSPA 1H80A 2ODLA 5C1CA 2QXZA 2VBEA 4YZXA 4XLCA 2UVEA 4W8QA 2NT6A 1JTAA 2PYGA 1O8IA 2Z8GA 4Z03A 1OOCA 4YEJA 4XORA 1X0CA 4XNFA 2VBKA 3VMVA 3B8YA 2O04A 1HG8A 1KCCA 1OFLA 4XOTA 1AIRA 1QJVA 3GQ9A 2NTPA 2X85A 4HWVA 4W8RA 4YZAA 4MR0A 4URRA 2VBMA 3UW0A 4XR6A 3WWGA 1IA5A 1O8GA 1RU4A 1O8JA 2EWEA 2INVA 1KCDA 4OJ5A 4XLAA 3B4NA 1VBLA 2X3HA 3KRGA 1O8KA 4Z06A 1WMRA 4XM3A 2NT9A 1XG2A 3VMWA 4XOPA 1O8EA 3GQAA 4OJOA 2VJIA 4OJLA 3VSTA 2O17A 2X6WA 1QCXA 1OGMX 4XLEA 4I84A 1PLUA 3T9GA 1O8DA 4YELA 4XN0A 4U4BA 4EW9A 2O0VA 4XLFA 5C1EA 1K5CA 4XONA 2NZMA 4OJPA 1KTWA 2PYHA 3LMWA 4YZQA 4W8SA 4Z05A 4OZZA 4XL9A 1O8MA 4XN3A 1PXZA 3FY3A 1PE9A 2VJJA 3SUCA 4NK8A 1CZFA 3JURA 3GQ7A 1O8HA 2QY1A 1OFMA 3B90A 2QX3A 3VSVA 2NTBA 5AMVA 1BN8A
chains in the Genus database with same CATH superfamily
1QRBA 1RMGA 2O0WA 3EQNA 1IDJA 1OFEA 1RWRA 2BSPA 1IDKA 1BHEA 1TSPA 3P4GA 1JRGA 2NTQA 4OZYA 3ZSCA 4XMYA 4AVZA 4XQFA 2INUA 4NK6A 1O8FA 3ZPPA 3EQOA 3SYJA 2YUHA 4OJ6A 1IB4A 1CLWA 1O8LA 4V02C 1TYUA 1QA3A 4XKVA 3GQ8A 1K4ZA 1EE6A 1OGOX 1TYXA 1EA0A 2X6XA 2IQ7A 4W8TA 2IOUG 1LLWA 2PECA 4OM9A 1HF2A 4YZ0A 2O1DA 2UVFA 3GRHA 1GQ8A 3VSUA 1NHCA 3DU1X 2XT4A 4PMHA 2NSTA 3H09A 1DBOA 2XC1A 1DBGA 4XLHA 4C2LA 4MXNA 4XKWA 2X6YA 4YDTA 2QX3A 2O6WA 4U49A 2NSPA 1H80A 1QRCA 2ODLA 2BX6A 5C1CA 1TYVA 3NB2A 2QXZA 2VBEA 4YZXA 4XLCA 2UVEA 1QA2A 4W8QA 3JX8A 3LJYA 2NT6A 1JTAA 2BM7A 2PYGA 3N6ZA 3SQVA 1O8IA 2Z8GA 4Z03A 1OOCA 4YEJA 4XORA 1X0CA 4XNFA 3SZEA 1OFDA 2VBKA 1QQ1A 2BM6A 3VMVA 3B8YA 2O04A 1HG8A 3NAWA 1KCCA 1OFLA 4XOTA 1AIRA 1QJVA 3GQ9A 2VFQA 1DABA 5DNSA 1EZGA 2NTPA 2X85A 4OPWA 4HWVA 4W8RA 4YZAA 4YEIA 3PSZA 4MR0A 4URRA 2VBMA 3UW0A 4XR6A 3WWGA 1IA5A 1KQ5A 1O8GA 4YC5A 1RU4A 2VFMA 1O8JA 2EWEA 2INVA 2VFPA 2XTXA 4OJ5A 4XLAA 1KCDA 3B4NA 1VBLA 2QYUA 2X3HA 2XTYA 3KRGA 1O8KA 4Z06A 1WMRA 4XM3A 4KH3A 5JMCB 2XTWA 2NT9A 2F3LA 1XG2A 3VMWA 3PSSA 4XOPA 1O8EA 3GQAA 4OJOA 2J8IA 2VJIA 2XT2A 4JRAC 4OJLA 2O17A 2X6WA 1QCXA 3VSTA 1OGMX 4XLEA 3ML3A 3BH7B 1PLUA 4I84A 3T9GA 1O8DA 4YELA 3SY2A 4XN0A 1L1IA 5JLVC 3N90A 4U4BA 4EW9A 2J8KA 2VFNA 2O0VA 3TH0A 2BM5A 3PETA 3BH6B 4XLFA 5C1EA 4YFOA 1K5CA 1LLZA 4YCQA 2BM4A 2NZMA 4XONA 1K8FA 2V5IA 4OJPA 1KTWA 2PYHA 1LM1A 3LMWA 4YZQA 3LYCA 2W7ZA 4W8SA 4Z05A 4OZZA 4XL9A 1O8MA 4XN3A 3RIQA 2VFOA 1PXZA 3FY3A 2B0RA 1PE9A 2VJJA 3SUCA 1TYWA 1CZFA 4NK8A 3JURA 3GQ7A 1O8HA 2QZAA 1QA1A 3AK5A 2G0YA 2QY1A 1OFMA 3B90A 1O88A 1WXRA 3VSVA 2NTBA 5AMVA 1BN8A
chains in the Genus database with same CATH topology
1RMGA 2O0WA 3EQNA 1IDJA 1RWRA 2BSPA 1IDKA 1BHEA 1JRGA 2NTQA 4OZYA 3ZSCA 4XMYA 4AVZA 4XQFA 2INUA 4NK6A 1O8FA 3ZPPA 3EQOA 4OJ6A 1IB4A 1O8LA 4XKVA 3GQ8A 1EE6A 1OGOX 2X6XA 2IQ7A 1O88A 4W8TA 2PECA 4YZ0A 2O1DA 2UVFA 3GRHA 1GQ8A 3VSUA 1NHCA 4PMHA 2NSTA 1DBOA 1DBGA 4XLHA 4C2LA 4MXNA 4XKWA 2X6YA 4U49A 2NSPA 1H80A 2ODLA 5C1CA 2QXZA 2VBEA 4YZXA 4XLCA 2UVEA 4W8QA 2NT6A 1JTAA 2PYGA 1O8IA 2Z8GA 4Z03A 1OOCA 4YEJA 4XORA 1X0CA 4XNFA 2VBKA 3VMVA 3B8YA 2O04A 1HG8A 1KCCA 1OFLA 4XOTA 1AIRA 1QJVA 3GQ9A 2NTPA 2X85A 4HWVA 4W8RA 4YZAA 4MR0A 4URRA 2VBMA 3UW0A 4XR6A 3WWGA 1IA5A 1O8GA 1RU4A 1O8JA 2EWEA 2INVA 1KCDA 4OJ5A 4XLAA 3B4NA 1VBLA 2X3HA 3KRGA 1O8KA 4Z06A 1WMRA 4XM3A 2NT9A 1XG2A 3VMWA 4XOPA 1O8EA 3GQAA 4OJOA 2VJIA 4OJLA 3VSTA 2O17A 2X6WA 1QCXA 1OGMX 4XLEA 4I84A 1PLUA 3T9GA 1O8DA 4YELA 4XN0A 4U4BA 4EW9A 2O0VA 4XLFA 5C1EA 1K5CA 4XONA 2NZMA 4OJPA 1KTWA 2PYHA 3LMWA 4YZQA 4W8SA 4Z05A 4OZZA 4XL9A 1O8MA 4XN3A 1PXZA 3FY3A 1PE9A 2VJJA 3SUCA 4NK8A 1CZFA 3JURA 3GQ7A 1O8HA 2QY1A 1OFMA 3B90A 2QX3A 3VSVA 2NTBA 5AMVA 1BN8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RMG A;  2O0W A;  3EQN A;  1IDJ A;  1RWR A;  2BSP A;  1IDK A;  1BHE A;  1JRG A;  2NTQ A;  4OZY A;  3ZSC A;  4XMY A;  4AVZ A;  4XQF A;  2INU A;  4NK6 A;  1O8F A;  3ZPP A;  3EQO A;  4OJ6 A;  1IB4 A;  1O8L A;  4XKV A;  3GQ8 A;  1EE6 A;  1OGO X;  2X6X A;  2IQ7 A;  1O88 A;  4W8T A;  2PEC A;  4YZ0 A;  2O1D A;  2UVF A;  3GRH A;  1GQ8 A;  3VSU A;  1NHC A;  4PMH A;  2NST A;  1DBO A;  1DBG A;  4XLH A;  4C2L A;  4MXN A;  4XKW A;  2X6Y A;  4U49 A;  2NSP A;  1H80 A;  2ODL A;  5C1C A;  2QXZ A;  2VBE A;  4YZX A;  4XLC A;  2UVE A;  4W8Q A;  2NT6 A;  1JTA A;  2PYG A;  1O8I A;  2Z8G A;  4Z03 A;  1OOC A;  4YEJ A;  4XOR A;  1X0C A;  4XNF A;  2VBK A;  3VMV A;  3B8Y A;  2O04 A;  1HG8 A;  1KCC A;  1OFL A;  4XOT A;  1AIR A;  1QJV A;  3GQ9 A;  2NTP A;  2X85 A;  4HWV A;  4W8R A;  4YZA A;  4MR0 A;  4URR A;  2VBM A;  3UW0 A;  4XR6 A;  3WWG A;  1IA5 A;  1O8G A;  1RU4 A;  1O8J A;  2EWE A;  2INV A;  1KCD A;  4OJ5 A;  4XLA A;  3B4N A;  1VBL A;  2X3H A;  3KRG A;  1O8K A;  4Z06 A;  1WMR A;  4XM3 A;  2NT9 A;  1XG2 A;  3VMW A;  4XOP A;  1O8E A;  3GQA A;  4OJO A;  2VJI A;  4OJL A;  3VST A;  2O17 A;  2X6W A;  1QCX A;  1OGM X;  4XLE A;  4I84 A;  1PLU A;  3T9G A;  1O8D A;  4YEL A;  4XN0 A;  4U4B A;  4EW9 A;  2O0V A;  4XLF A;  5C1E A;  1K5C A;  4XON A;  2NZM A;  4OJP A;  1KTW A;  2PYH A;  3LMW A;  4YZQ A;  4W8S A;  4Z05 A;  4OZZ A;  4XL9 A;  1O8M A;  4XN3 A;  1PXZ A;  3FY3 A;  1PE9 A;  2VJJ A;  3SUC A;  4NK8 A;  1CZF A;  3JUR A;  3GQ7 A;  1O8H A;  2QY1 A;  1OFM A;  3B90 A;  2QX3 A;  3VSV A;  2NTB A;  5AMV A;  1BN8 A; 
#chains in the Genus database with same CATH topology
 1QRB A;  1RMG A;  2O0W A;  3EQN A;  1IDJ A;  1OFE A;  1RWR A;  2BSP A;  1IDK A;  1BHE A;  1TSP A;  3P4G A;  1JRG A;  2NTQ A;  4OZY A;  3ZSC A;  4XMY A;  4AVZ A;  4XQF A;  2INU A;  4NK6 A;  1O8F A;  3ZPP A;  3EQO A;  3SYJ A;  2YUH A;  4OJ6 A;  1IB4 A;  1CLW A;  1O8L A;  4V02 C;  1TYU A;  1QA3 A;  4XKV A;  3GQ8 A;  1K4Z A;  1EE6 A;  1OGO X;  1TYX A;  1EA0 A;  2X6X A;  2IQ7 A;  4W8T A;  2IOU G;  1LLW A;  2PEC A;  4OM9 A;  1HF2 A;  4YZ0 A;  2O1D A;  2UVF A;  3GRH A;  1GQ8 A;  3VSU A;  1NHC A;  3DU1 X;  2XT4 A;  4PMH A;  2NST A;  3H09 A;  1DBO A;  2XC1 A;  1DBG A;  4XLH A;  4C2L A;  4MXN A;  4XKW A;  2X6Y A;  4YDT A;  2QX3 A;  2O6W A;  4U49 A;  2NSP A;  1H80 A;  1QRC A;  2ODL A;  2BX6 A;  5C1C A;  1TYV A;  3NB2 A;  2QXZ A;  2VBE A;  4YZX A;  4XLC A;  2UVE A;  1QA2 A;  4W8Q A;  3JX8 A;  3LJY A;  2NT6 A;  1JTA A;  2BM7 A;  2PYG A;  3N6Z A;  3SQV A;  1O8I A;  2Z8G A;  4Z03 A;  1OOC A;  4YEJ A;  4XOR A;  1X0C A;  4XNF A;  3SZE A;  1OFD A;  2VBK A;  1QQ1 A;  2BM6 A;  3VMV A;  3B8Y A;  2O04 A;  1HG8 A;  3NAW A;  1KCC A;  1OFL A;  4XOT A;  1AIR A;  1QJV A;  3GQ9 A;  2VFQ A;  1DAB A;  5DNS A;  1EZG A;  2NTP A;  2X85 A;  4OPW A;  4HWV A;  4W8R A;  4YZA A;  4YEI A;  3PSZ A;  4MR0 A;  4URR A;  2VBM A;  3UW0 A;  4XR6 A;  3WWG A;  1IA5 A;  1KQ5 A;  1O8G A;  4YC5 A;  1RU4 A;  2VFM A;  1O8J A;  2EWE A;  2INV A;  2VFP A;  2XTX A;  4OJ5 A;  4XLA A;  1KCD A;  3B4N A;  1VBL A;  2QYU A;  2X3H A;  2XTY A;  3KRG A;  1O8K A;  4Z06 A;  1WMR A;  4XM3 A;  4KH3 A;  5JMC B;  2XTW A;  2NT9 A;  2F3L A;  1XG2 A;  3VMW A;  3PSS A;  4XOP A;  1O8E A;  3GQA A;  4OJO A;  2J8I A;  2VJI A;  2XT2 A;  4JRA C;  4OJL A;  2O17 A;  2X6W A;  1QCX A;  3VST A;  1OGM X;  4XLE A;  3ML3 A;  3BH7 B;  1PLU A;  4I84 A;  3T9G A;  1O8D A;  4YEL A;  3SY2 A;  4XN0 A;  1L1I A;  5JLV C;  3N90 A;  4U4B A;  4EW9 A;  2J8K A;  2VFN A;  2O0V A;  3TH0 A;  2BM5 A;  3PET A;  3BH6 B;  4XLF A;  5C1E A;  4YFO A;  1K5C A;  1LLZ A;  4YCQ A;  2BM4 A;  2NZM A;  4XON A;  1K8F A;  2V5I A;  4OJP A;  1KTW A;  2PYH A;  1LM1 A;  3LMW A;  4YZQ A;  3LYC A;  2W7Z A;  4W8S A;  4Z05 A;  4OZZ A;  4XL9 A;  1O8M A;  4XN3 A;  3RIQ A;  2VFO A;  1PXZ A;  3FY3 A;  2B0R A;  1PE9 A;  2VJJ A;  3SUC A;  1TYW A;  1CZF A;  4NK8 A;  3JUR A;  3GQ7 A;  1O8H A;  2QZA A;  1QA1 A;  3AK5 A;  2G0Y A;  2QY1 A;  1OFM A;  3B90 A;  1O88 A;  1WXR A;  3VSV A;  2NTB A;  5AMV A;  1BN8 A; 
#chains in the Genus database with same CATH homology
 1RMG A;  2O0W A;  3EQN A;  1IDJ A;  1RWR A;  2BSP A;  1IDK A;  1BHE A;  1JRG A;  2NTQ A;  4OZY A;  3ZSC A;  4XMY A;  4AVZ A;  4XQF A;  2INU A;  4NK6 A;  1O8F A;  3ZPP A;  3EQO A;  4OJ6 A;  1IB4 A;  1O8L A;  4XKV A;  3GQ8 A;  1EE6 A;  1OGO X;  2X6X A;  2IQ7 A;  1O88 A;  4W8T A;  2PEC A;  4YZ0 A;  2O1D A;  2UVF A;  3GRH A;  1GQ8 A;  3VSU A;  1NHC A;  4PMH A;  2NST A;  1DBO A;  1DBG A;  4XLH A;  4C2L A;  4MXN A;  4XKW A;  2X6Y A;  4U49 A;  2NSP A;  1H80 A;  2ODL A;  5C1C A;  2QXZ A;  2VBE A;  4YZX A;  4XLC A;  2UVE A;  4W8Q A;  2NT6 A;  1JTA A;  2PYG A;  1O8I A;  2Z8G A;  4Z03 A;  1OOC A;  4YEJ A;  4XOR A;  1X0C A;  4XNF A;  2VBK A;  3VMV A;  3B8Y A;  2O04 A;  1HG8 A;  1KCC A;  1OFL A;  4XOT A;  1AIR A;  1QJV A;  3GQ9 A;  2NTP A;  2X85 A;  4HWV A;  4W8R A;  4YZA A;  4MR0 A;  4URR A;  2VBM A;  3UW0 A;  4XR6 A;  3WWG A;  1IA5 A;  1O8G A;  1RU4 A;  1O8J A;  2EWE A;  2INV A;  1KCD A;  4OJ5 A;  4XLA A;  3B4N A;  1VBL A;  2X3H A;  3KRG A;  1O8K A;  4Z06 A;  1WMR A;  4XM3 A;  2NT9 A;  1XG2 A;  3VMW A;  4XOP A;  1O8E A;  3GQA A;  4OJO A;  2VJI A;  4OJL A;  3VST A;  2O17 A;  2X6W A;  1QCX A;  1OGM X;  4XLE A;  4I84 A;  1PLU A;  3T9G A;  1O8D A;  4YEL A;  4XN0 A;  4U4B A;  4EW9 A;  2O0V A;  4XLF A;  5C1E A;  1K5C A;  4XON A;  2NZM A;  4OJP A;  1KTW A;  2PYH A;  3LMW A;  4YZQ A;  4W8S A;  4Z05 A;  4OZZ A;  4XL9 A;  1O8M A;  4XN3 A;  1PXZ A;  3FY3 A;  1PE9 A;  2VJJ A;  3SUC A;  4NK8 A;  1CZF A;  3JUR A;  3GQ7 A;  1O8H A;  2QY1 A;  1OFM A;  3B90 A;  2QX3 A;  3VSV A;  2NTB A;  5AMV A;  1BN8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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