1H80A

1,3-alpha-1,4-beta-d-galactose-4-sulfate- 3,6-anhydro-d-galactose-2-sulfate 4 galactohydrolase
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
464
structure length
433
Chain Sequence
b'VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSGCAQTPAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWER'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords IOTA-CARRAGEENASE
molecule tags Hydrolase
source organism Alteromonas sp. atcc43554
publication title The Iota-Carrageenase of Alteromonas Fortis. A Beta-Helix Fold-Containing Enzyme for the Degradation of a Highly Polyanionic Polysaccharide
pubmed doi rcsb
total genus 161
structure length 433
sequence length 464
chains with identical sequence B
ec nomenclature ec 3.2.1.157: Iota-carrageenase.
pdb deposition date 2001-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1h80A00
3KRGA 4XLEA 3B4NA 4YZAA 4URRA 4OZZA 4XN0A 1OFMA 1RWRA 4OJ5A 1IB4A 1NHCA 3EQNA 2Z8GA 4XNFA 2NT9A 4XLHA 2NSPA 4XL9A 4XONA 5AMVA 2ODLA 1QJVA 1VBLA 1OFLA 1KTWA 4XKWA 2VJIA 1JTAA 4XN3A 2O04A 1O8LA 2QY1A 2BSPA 2IQ7A 3LMWA 4OZYA 2X85A 4Z06A 3UW0A 4AVZA 4HWVA 1O8JA 2VBMA 3VMWA 2VBKA 4YEJA 2O1DA 3VSUA 3JURA 3T9GA 4YZXA 1BN8A 4W8SA 3GQAA 4XLAA 4XORA 1OGOX 4U4BA 2X6WA 4OJOA 2O0VA 3VSVA 2INUA 2PYGA 4W8TA 1BHEA 1GQ8A 3ZSCA 5C1EA 1O8IA 3GRHA 2PYHA 4XQFA 1IA5A 4Z03A 2UVFA 1PLUA 1K5CA 4MXNA 1O8GA 2VBEA 3GQ8A 2NT6A 4U49A 4I84A 1KCDA 4OJLA 1O8DA 1OOCA 1O8KA 1KCCA 4XOTA 3ZPPA 1O8MA 1CZFA 4PMHA 2QX3A 4YZQA 4NK8A 4XM3A 1QCXA 4YZ0A 1O8EA 3VSTA 3WWGA 1RMGA 1O88A 2NTPA 1WMRA 4EW9A 4MR0A 1OGMX 2UVEA 2X3HA 2PECA 4Z05A 3B90A 4XR6A 1IDJA 2QXZA 2VJJA 4W8QA 1X0CA 1RU4A 1DBOA 3VMVA 3GQ7A 4OJPA 2O0WA 1EE6A 1DBGA 4C2LA 1O8FA 4YELA 1IDKA 2NTBA 2EWEA 1JRGA 1XG2A 3FY3A 1O8HA 1PE9A 2X6XA 4W8RA 2O17A 3GQ9A 4XOPA 1PXZA 1H80A 4XLFA 2INVA 1HG8A 4XKVA 2X6YA 3B8YA 4OJ6A 2NZMA 2NSTA 5C1CA 4XLCA 1AIRA 2NTQA 4NK6A 3EQOA 3SUCA 4XMYA
chains in the Genus database with same CATH superfamily
2BM4A 3KRGA 3B4NA 1CLWA 4OM9A 4URRA 4XLEA 4YZAA 1QA2A 4OZZA 1OFEA 2QYUA 4XN0A 1OFMA 1RWRA 4OJ5A 1IB4A 1NHCA 3EQNA 2Z8GA 4XNFA 2NT9A 2XTYA 4XLHA 2NSPA 1QA1A 4XL9A 4XONA 5AMVA 3SY2A 2ODLA 1QJVA 2W7ZA 1KQ5A 1VBLA 3NB2A 1OFLA 1KTWA 4XKWA 2VJIA 1JTAA 1QA3A 3LJYA 4XN3A 2O04A 1O8LA 2QY1A 2QZAA 1LLZA 3SYJA 4YCQA 2BSPA 2IQ7A 3LMWA 4OZYA 2X85A 4Z06A 3UW0A 4AVZA 4HWVA 1O8JA 2VBMA 3VMWA 2VBKA 4YEJA 3P4GA 1TYUA 2O1DA 3VSUA 3JURA 1QQ1A 2YUHA 2J8KA 3T9GA 4YZXA 1BN8A 1K8FA 2B0RA 1TSPA 4W8SA 3GQAA 4XLAA 4XORA 1OGOX 4U4BA 2X6WA 1TYWA 4OJOA 2XTWA 4KH3A 1LM1A 2VFOA 2XT2A 3RIQA 2O0VA 3VSVA 5JLVC 2INUA 2PYGA 4W8TA 4YFOA 1BHEA 1GQ8A 2VFNA 3ZSCA 5C1EA 1O8IA 3GRHA 2PYHA 4XQFA 1IA5A 3BH6B 5JMCB 3PSZA 2XTXA 3ML3A 4Z03A 2UVFA 1PLUA 1K5CA 4MXNA 1O8GA 2V5IA 4YC5A 2VBEA 4JRAC 3GQ8A 3N6ZA 2NT6A 1EZGA 1OFDA 4U49A 1HF2A 4I84A 1KCDA 4OJLA 1O8DA 1OOCA 1O8KA 3NAWA 1QRCA 1KCCA 4XOTA 3ZPPA 1O8MA 1CZFA 4PMHA 2QX3A 4YZQA 2BM6A 4NK8A 4XM3A 2F3LA 1QCXA 4YZ0A 1O8EA 3VSTA 3WWGA 1RMGA 1O88A 2NTPA 1WMRA 4EW9A 4MR0A 1DABA 2BM7A 1OGMX 2UVEA 2X3HA 3N90A 3AK5A 2J8IA 2PECA 4Z05A 3B90A 3LYCA 1QRBA 4XR6A 3DU1X 1IDJA 2QXZA 2VJJA 4W8QA 1X0CA 3SZEA 1EA0A 3PSSA 1RU4A 2IOUG 1DBOA 2VFQA 3VMVA 3GQ7A 4OJPA 4V02C 2O0WA 1EE6A 1DBGA 4C2LA 1O8FA 1WXRA 3SQVA 4YELA 1IDKA 2NTBA 2EWEA 2O6WA 1JRGA 1XG2A 3FY3A 1O8HA 1PE9A 2X6XA 1TYVA 4W8RA 5DNSA 3TH0A 2O17A 3GQ9A 3H09A 2G0YA 1LLWA 1PXZA 4XOPA 2BM5A 1H80A 3BH7B 4XLFA 3JX8A 2XT4A 2INVA 1HG8A 2XC1A 4XKVA 2X6YA 3B8YA 1TYXA 4OPWA 1K4ZA 2VFPA 4OJ6A 2NZMA 2NSTA 4YDTA 4YEIA 2BX6A 3PETA 5C1CA 1L1IA 4XLCA 1AIRA 2NTQA 4NK6A 3EQOA 3SUCA 2VFMA 4XMYA
chains in the Genus database with same CATH topology
3KRGA 4XLEA 3B4NA 4YZAA 4URRA 4OZZA 4XN0A 1OFMA 1RWRA 4OJ5A 1IB4A 1NHCA 3EQNA 2Z8GA 4XNFA 2NT9A 4XLHA 2NSPA 4XL9A 4XONA 5AMVA 2ODLA 1QJVA 1VBLA 1OFLA 1KTWA 4XKWA 2VJIA 1JTAA 4XN3A 2O04A 1O8LA 2QY1A 2BSPA 2IQ7A 3LMWA 4OZYA 2X85A 4Z06A 3UW0A 4AVZA 4HWVA 1O8JA 2VBMA 3VMWA 2VBKA 4YEJA 2O1DA 3VSUA 3JURA 3T9GA 4YZXA 1BN8A 4W8SA 3GQAA 4XLAA 4XORA 1OGOX 4U4BA 2X6WA 4OJOA 2O0VA 3VSVA 2INUA 2PYGA 4W8TA 1BHEA 1GQ8A 3ZSCA 5C1EA 1O8IA 3GRHA 2PYHA 4XQFA 1IA5A 4Z03A 2UVFA 1PLUA 1K5CA 4MXNA 1O8GA 2VBEA 3GQ8A 2NT6A 4U49A 4I84A 1KCDA 4OJLA 1O8DA 1OOCA 1O8KA 1KCCA 4XOTA 3ZPPA 1O8MA 1CZFA 4PMHA 2QX3A 4YZQA 4NK8A 4XM3A 1QCXA 4YZ0A 1O8EA 3VSTA 3WWGA 1RMGA 1O88A 2NTPA 1WMRA 4EW9A 4MR0A 1OGMX 2UVEA 2X3HA 2PECA 4Z05A 3B90A 4XR6A 1IDJA 2QXZA 2VJJA 4W8QA 1X0CA 1RU4A 1DBOA 3VMVA 3GQ7A 4OJPA 2O0WA 1EE6A 1DBGA 4C2LA 1O8FA 4YELA 1IDKA 2NTBA 2EWEA 1JRGA 1XG2A 3FY3A 1O8HA 1PE9A 2X6XA 4W8RA 2O17A 3GQ9A 4XOPA 1PXZA 1H80A 4XLFA 2INVA 1HG8A 4XKVA 2X6YA 3B8YA 4OJ6A 2NZMA 2NSTA 5C1CA 4XLCA 1AIRA 2NTQA 4NK6A 3EQOA 3SUCA 4XMYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KRG A;  4XLE A;  3B4N A;  4YZA A;  4URR A;  4OZZ A;  4XN0 A;  1OFM A;  1RWR A;  4OJ5 A;  1IB4 A;  1NHC A;  3EQN A;  2Z8G A;  4XNF A;  2NT9 A;  4XLH A;  2NSP A;  4XL9 A;  4XON A;  5AMV A;  2ODL A;  1QJV A;  1VBL A;  1OFL A;  1KTW A;  4XKW A;  2VJI A;  1JTA A;  4XN3 A;  2O04 A;  1O8L A;  2QY1 A;  2BSP A;  2IQ7 A;  3LMW A;  4OZY A;  2X85 A;  4Z06 A;  3UW0 A;  4AVZ A;  4HWV A;  1O8J A;  2VBM A;  3VMW A;  2VBK A;  4YEJ A;  2O1D A;  3VSU A;  3JUR A;  3T9G A;  4YZX A;  1BN8 A;  4W8S A;  3GQA A;  4XLA A;  4XOR A;  1OGO X;  4U4B A;  2X6W A;  4OJO A;  2O0V A;  3VSV A;  2INU A;  2PYG A;  4W8T A;  1BHE A;  1GQ8 A;  3ZSC A;  5C1E A;  1O8I A;  3GRH A;  2PYH A;  4XQF A;  1IA5 A;  4Z03 A;  2UVF A;  1PLU A;  1K5C A;  4MXN A;  1O8G A;  2VBE A;  3GQ8 A;  2NT6 A;  4U49 A;  4I84 A;  1KCD A;  4OJL A;  1O8D A;  1OOC A;  1O8K A;  1KCC A;  4XOT A;  3ZPP A;  1O8M A;  1CZF A;  4PMH A;  2QX3 A;  4YZQ A;  4NK8 A;  4XM3 A;  1QCX A;  4YZ0 A;  1O8E A;  3VST A;  3WWG A;  1RMG A;  1O88 A;  2NTP A;  1WMR A;  4EW9 A;  4MR0 A;  1OGM X;  2UVE A;  2X3H A;  2PEC A;  4Z05 A;  3B90 A;  4XR6 A;  1IDJ A;  2QXZ A;  2VJJ A;  4W8Q A;  1X0C A;  1RU4 A;  1DBO A;  3VMV A;  3GQ7 A;  4OJP A;  2O0W A;  1EE6 A;  1DBG A;  4C2L A;  1O8F A;  4YEL A;  1IDK A;  2NTB A;  2EWE A;  1JRG A;  1XG2 A;  3FY3 A;  1O8H A;  1PE9 A;  2X6X A;  4W8R A;  2O17 A;  3GQ9 A;  4XOP A;  1PXZ A;  1H80 A;  4XLF A;  2INV A;  1HG8 A;  4XKV A;  2X6Y A;  3B8Y A;  4OJ6 A;  2NZM A;  2NST A;  5C1C A;  4XLC A;  1AIR A;  2NTQ A;  4NK6 A;  3EQO A;  3SUC A;  4XMY A; 
#chains in the Genus database with same CATH topology
 2BM4 A;  3KRG A;  3B4N A;  1CLW A;  4OM9 A;  4URR A;  4XLE A;  4YZA A;  1QA2 A;  4OZZ A;  1OFE A;  2QYU A;  4XN0 A;  1OFM A;  1RWR A;  4OJ5 A;  1IB4 A;  1NHC A;  3EQN A;  2Z8G A;  4XNF A;  2NT9 A;  2XTY A;  4XLH A;  2NSP A;  1QA1 A;  4XL9 A;  4XON A;  5AMV A;  3SY2 A;  2ODL A;  1QJV A;  2W7Z A;  1KQ5 A;  1VBL A;  3NB2 A;  1OFL A;  1KTW A;  4XKW A;  2VJI A;  1JTA A;  1QA3 A;  3LJY A;  4XN3 A;  2O04 A;  1O8L A;  2QY1 A;  2QZA A;  1LLZ A;  3SYJ A;  4YCQ A;  2BSP A;  2IQ7 A;  3LMW A;  4OZY A;  2X85 A;  4Z06 A;  3UW0 A;  4AVZ A;  4HWV A;  1O8J A;  2VBM A;  3VMW A;  2VBK A;  4YEJ A;  3P4G A;  1TYU A;  2O1D A;  3VSU A;  3JUR A;  1QQ1 A;  2YUH A;  2J8K A;  3T9G A;  4YZX A;  1BN8 A;  1K8F A;  2B0R A;  1TSP A;  4W8S A;  3GQA A;  4XLA A;  4XOR A;  1OGO X;  4U4B A;  2X6W A;  1TYW A;  4OJO A;  2XTW A;  4KH3 A;  1LM1 A;  2VFO A;  2XT2 A;  3RIQ A;  2O0V A;  3VSV A;  5JLV C;  2INU A;  2PYG A;  4W8T A;  4YFO A;  1BHE A;  1GQ8 A;  2VFN A;  3ZSC A;  5C1E A;  1O8I A;  3GRH A;  2PYH A;  4XQF A;  1IA5 A;  3BH6 B;  5JMC B;  3PSZ A;  2XTX A;  3ML3 A;  4Z03 A;  2UVF A;  1PLU A;  1K5C A;  4MXN A;  1O8G A;  2V5I A;  4YC5 A;  2VBE A;  4JRA C;  3GQ8 A;  3N6Z A;  2NT6 A;  1EZG A;  1OFD A;  4U49 A;  1HF2 A;  4I84 A;  1KCD A;  4OJL A;  1O8D A;  1OOC A;  1O8K A;  3NAW A;  1QRC A;  1KCC A;  4XOT A;  3ZPP A;  1O8M A;  1CZF A;  4PMH A;  2QX3 A;  4YZQ A;  2BM6 A;  4NK8 A;  4XM3 A;  2F3L A;  1QCX A;  4YZ0 A;  1O8E A;  3VST A;  3WWG A;  1RMG A;  1O88 A;  2NTP A;  1WMR A;  4EW9 A;  4MR0 A;  1DAB A;  2BM7 A;  1OGM X;  2UVE A;  2X3H A;  3N90 A;  3AK5 A;  2J8I A;  2PEC A;  4Z05 A;  3B90 A;  3LYC A;  1QRB A;  4XR6 A;  3DU1 X;  1IDJ A;  2QXZ A;  2VJJ A;  4W8Q A;  1X0C A;  3SZE A;  1EA0 A;  3PSS A;  1RU4 A;  2IOU G;  1DBO A;  2VFQ A;  3VMV A;  3GQ7 A;  4OJP A;  4V02 C;  2O0W A;  1EE6 A;  1DBG A;  4C2L A;  1O8F A;  1WXR A;  3SQV A;  4YEL A;  1IDK A;  2NTB A;  2EWE A;  2O6W A;  1JRG A;  1XG2 A;  3FY3 A;  1O8H A;  1PE9 A;  2X6X A;  1TYV A;  4W8R A;  5DNS A;  3TH0 A;  2O17 A;  3GQ9 A;  3H09 A;  2G0Y A;  1LLW A;  1PXZ A;  4XOP A;  2BM5 A;  1H80 A;  3BH7 B;  4XLF A;  3JX8 A;  2XT4 A;  2INV A;  1HG8 A;  2XC1 A;  4XKV A;  2X6Y A;  3B8Y A;  1TYX A;  4OPW A;  1K4Z A;  2VFP A;  4OJ6 A;  2NZM A;  2NST A;  4YDT A;  4YEI A;  2BX6 A;  3PET A;  5C1C A;  1L1I A;  4XLC A;  1AIR A;  2NTQ A;  4NK6 A;  3EQO A;  3SUC A;  2VFM A;  4XMY A; 
#chains in the Genus database with same CATH homology
 3KRG A;  4XLE A;  3B4N A;  4YZA A;  4URR A;  4OZZ A;  4XN0 A;  1OFM A;  1RWR A;  4OJ5 A;  1IB4 A;  1NHC A;  3EQN A;  2Z8G A;  4XNF A;  2NT9 A;  4XLH A;  2NSP A;  4XL9 A;  4XON A;  5AMV A;  2ODL A;  1QJV A;  1VBL A;  1OFL A;  1KTW A;  4XKW A;  2VJI A;  1JTA A;  4XN3 A;  2O04 A;  1O8L A;  2QY1 A;  2BSP A;  2IQ7 A;  3LMW A;  4OZY A;  2X85 A;  4Z06 A;  3UW0 A;  4AVZ A;  4HWV A;  1O8J A;  2VBM A;  3VMW A;  2VBK A;  4YEJ A;  2O1D A;  3VSU A;  3JUR A;  3T9G A;  4YZX A;  1BN8 A;  4W8S A;  3GQA A;  4XLA A;  4XOR A;  1OGO X;  4U4B A;  2X6W A;  4OJO A;  2O0V A;  3VSV A;  2INU A;  2PYG A;  4W8T A;  1BHE A;  1GQ8 A;  3ZSC A;  5C1E A;  1O8I A;  3GRH A;  2PYH A;  4XQF A;  1IA5 A;  4Z03 A;  2UVF A;  1PLU A;  1K5C A;  4MXN A;  1O8G A;  2VBE A;  3GQ8 A;  2NT6 A;  4U49 A;  4I84 A;  1KCD A;  4OJL A;  1O8D A;  1OOC A;  1O8K A;  1KCC A;  4XOT A;  3ZPP A;  1O8M A;  1CZF A;  4PMH A;  2QX3 A;  4YZQ A;  4NK8 A;  4XM3 A;  1QCX A;  4YZ0 A;  1O8E A;  3VST A;  3WWG A;  1RMG A;  1O88 A;  2NTP A;  1WMR A;  4EW9 A;  4MR0 A;  1OGM X;  2UVE A;  2X3H A;  2PEC A;  4Z05 A;  3B90 A;  4XR6 A;  1IDJ A;  2QXZ A;  2VJJ A;  4W8Q A;  1X0C A;  1RU4 A;  1DBO A;  3VMV A;  3GQ7 A;  4OJP A;  2O0W A;  1EE6 A;  1DBG A;  4C2L A;  1O8F A;  4YEL A;  1IDK A;  2NTB A;  2EWE A;  1JRG A;  1XG2 A;  3FY3 A;  1O8H A;  1PE9 A;  2X6X A;  4W8R A;  2O17 A;  3GQ9 A;  4XOP A;  1PXZ A;  1H80 A;  4XLF A;  2INV A;  1HG8 A;  4XKV A;  2X6Y A;  3B8Y A;  4OJ6 A;  2NZM A;  2NST A;  5C1C A;  4XLC A;  1AIR A;  2NTQ A;  4NK6 A;  3EQO A;  3SUC A;  4XMY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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