1H80A

1,3-alpha-1,4-beta-d-galactose-4-sulfate- 3,6-anhydro-d-galactose-2-sulfate 4 galactohydrolase
Total Genus 161
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
464
structure length
433
Chain Sequence
VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSGCAQTPAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords IOTA-CARRAGEENASE
publication title The Iota-Carrageenase of Alteromonas Fortis. A Beta-Helix Fold-Containing Enzyme for the Degradation of a Highly Polyanionic Polysaccharide
pubmed doi rcsb
source organism Alteromonas sp. atcc43554
molecule tags Hydrolase
total genus 161
structure length 433
sequence length 464
chains with identical sequence B
ec nomenclature ec 3.2.1.157: Iota-carrageenase.
pdb deposition date 2001-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1h80A00
4C2LA 1KCDA 1QCXA 1X0CA 1PXZA 2O1DA 3GQ8A 4OJOA 2NT9A 1IB4A 1O8KA 2UVEA 1DBGA 1O8FA 2INVA 1JTAA 2NZMA 4XONA 1O8MA 1OFMA 4XOPA 3VSUA 1OGMX 2VJIA 1HG8A 4XN0A 3SUCA 2NTPA 1XG2A 4AVZA 1OFLA 4OJ6A 4XL9A 4XLCA 2UVFA 3VMWA 2PYHA 4YZAA 4U4BA 4XKWA 1IA5A 1JRGA 2O17A 4YEJA 1BN8A 3GQ9A 4YZQA 4NK6A 4XQFA 3B4NA 4W8SA 1RMGA 4Z03A 3FY3A 4NK8A 2X6YA 4YZXA 1EE6A 1KCCA 2QXZA 3EQOA 4XLEA 2O04A 4W8RA 4OJ5A 5C1CA 1O8DA 1O8LA 4XKVA 2O0VA 4Z06A 1RU4A 3VSVA 2BSPA 3VSTA 4XR6A 4OJPA 2INUA 4YZ0A 2EWEA 3KRGA 3B90A 3JURA 1OGOX 4W8QA 1WMRA 4OJLA 2X3HA 3WWGA 1IDJA 3GQ7A 2NSPA 4HWVA 4XLFA 3EQNA 1O88A 2O0WA 4EW9A 4XORA 4W8TA 1AIRA 4I84A 4PMHA 4XLAA 3ZPPA 4XLHA 3LMWA 4YELA 3UW0A 5C1EA 3B8YA 2ODLA 1DBOA 1OOCA 5AMVA 1O8IA 2X6XA 2VBMA 2X85A 2NTBA 1K5CA 2PYGA 1O8JA 1IDKA 2NSTA 1RWRA 1CZFA 4U49A 4URRA 2PECA 4XMYA 4MR0A 1O8GA 3VMVA 1O8EA 4XM3A 1BHEA 1QJVA 2QY1A 2QX3A 3T9GA 2Z8GA 3ZSCA 3GRHA 2VBKA 3GQAA 1VBLA 1KTWA 1PLUA 2NT6A 1PE9A 2VJJA 2VBEA 4OZYA 1NHCA 4XNFA 4XOTA 1O8HA 2NTQA 1GQ8A 4OZZA 2IQ7A 2X6WA 4MXNA 4XN3A 4Z05A 1H80A
chains in the Genus database with same CATH superfamily
4C2LA 1KCDA 3SQVA 1QCXA 1X0CA 1PXZA 2O1DA 3GQ8A 4OJOA 1WXRA 3LJYA 2XTWA 2NT9A 1IB4A 1O8KA 2XC1A 2UVEA 1DBGA 1O8FA 2INVA 1JTAA 2NZMA 3ML3A 1O8MA 1OFMA 3N90A 1EZGA 4XONA 4XOPA 3VSUA 1L1IA 1OGMX 2VJIA 3PETA 3SY2A 1HG8A 4XN0A 4YCQA 3SUCA 2NTPA 5JMCB 1XG2A 4AVZA 1OFLA 3BH7B 4OJ6A 4XL9A 4XLCA 2UVFA 3SYJA 3VMWA 2PYHA 4YZAA 1QRCA 2XT2A 4U4BA 4XKWA 1IA5A 1JRGA 3NB2A 2O17A 3H09A 2V5IA 4YEJA 2VFNA 1TYVA 1QA2A 1QQ1A 1TYXA 1BN8A 1OFDA 2QYUA 2VFOA 3GQ9A 4NK6A 1TYWA 3B4NA 4YZQA 2BM6A 4XQFA 5JLVC 4W8SA 1RMGA 3BH6B 4OM9A 3FY3A 2VFMA 4Z03A 1QA1A 4NK8A 2X6YA 4YZXA 1EE6A 4JRAC 1KCCA 2QXZA 3EQOA 4XLEA 2O04A 4W8RA 4OJ5A 5C1CA 4YDTA 3RIQA 3JX8A 3N6ZA 1O8DA 1O8LA 4XKVA 1DABA 2XTXA 2O0VA 3AK5A 4Z06A 1RU4A 3VSVA 1EA0A 1KQ5A 2BSPA 2QZAA 4XR6A 3VSTA 1OFEA 4OJPA 4YC5A 2INUA 2F3LA 1LLWA 2EWEA 3KRGA 4YZ0A 2YUHA 3B90A 2G0YA 3JURA 1OGOX 4W8QA 1WMRA 2XT4A 4OJLA 2X3HA 3WWGA 1IDJA 3GQ7A 2NSPA 3LYCA 4HWVA 4XLFA 3EQNA 1O88A 2O0WA 4EW9A 4XORA 4W8TA 1AIRA 4I84A 1LLZA 3PSSA 4PMHA 3TH0A 2W7ZA 4XLAA 3ZPPA 4XLHA 3LMWA 4YELA 5DNSA 3UW0A 5C1EA 3B8YA 2ODLA 2B0RA 1DBOA 1OOCA 5AMVA 1K8FA 1O8IA 2X6XA 2J8IA 2BM4A 2VBMA 2NTBA 2X85A 2PYGA 1K5CA 2IOUG 1O8JA 2XTYA 1IDKA 2NSTA 3P4GA 2BX6A 1RWRA 1CZFA 4U49A 4URRA 1HF2A 2PECA 4XMYA 4MR0A 1TYUA 3PSZA 1O8GA 1K4ZA 3DU1X 3VMVA 1O8EA 2BM7A 4XM3A 1BHEA 1QRBA 3NAWA 1QJVA 1LM1A 2QY1A 2QX3A 2Z8GA 4YFOA 3T9GA 4KH3A 3ZSCA 3GRHA 1TSPA 2VBKA 3GQAA 1VBLA 1KTWA 1PLUA 2VFQA 2NT6A 1PE9A 2VJJA 2VBEA 4OZYA 3SZEA 1NHCA 1CLWA 4XNFA 4XOTA 1O8HA 1QA3A 2NTQA 2VFPA 4V02C 1GQ8A 4OZZA 2O6WA 2IQ7A 2X6WA 2BM5A 4MXNA 4YEIA 4OPWA 4XN3A 4Z05A 2J8KA 1H80A
chains in the Genus database with same CATH topology
4C2LA 1KCDA 1QCXA 1X0CA 1PXZA 2O1DA 3GQ8A 4OJOA 2NT9A 1IB4A 1O8KA 2UVEA 1DBGA 1O8FA 2INVA 1JTAA 2NZMA 4XONA 1O8MA 1OFMA 4XOPA 3VSUA 1OGMX 2VJIA 1HG8A 4XN0A 3SUCA 2NTPA 1XG2A 4AVZA 1OFLA 4OJ6A 4XL9A 4XLCA 2UVFA 3VMWA 2PYHA 4YZAA 4U4BA 4XKWA 1IA5A 1JRGA 2O17A 4YEJA 1BN8A 3GQ9A 4YZQA 4NK6A 4XQFA 3B4NA 4W8SA 1RMGA 4Z03A 3FY3A 4NK8A 2X6YA 4YZXA 1EE6A 1KCCA 2QXZA 3EQOA 4XLEA 2O04A 4W8RA 4OJ5A 5C1CA 1O8DA 1O8LA 4XKVA 2O0VA 4Z06A 1RU4A 3VSVA 2BSPA 3VSTA 4XR6A 4OJPA 2INUA 4YZ0A 2EWEA 3KRGA 3B90A 3JURA 1OGOX 4W8QA 1WMRA 4OJLA 2X3HA 3WWGA 1IDJA 3GQ7A 2NSPA 4HWVA 4XLFA 3EQNA 1O88A 2O0WA 4EW9A 4XORA 4W8TA 1AIRA 4I84A 4PMHA 4XLAA 3ZPPA 4XLHA 3LMWA 4YELA 3UW0A 5C1EA 3B8YA 2ODLA 1DBOA 1OOCA 5AMVA 1O8IA 2X6XA 2VBMA 2X85A 2NTBA 1K5CA 2PYGA 1O8JA 1IDKA 2NSTA 1RWRA 1CZFA 4U49A 4URRA 2PECA 4XMYA 4MR0A 1O8GA 3VMVA 1O8EA 4XM3A 1BHEA 1QJVA 2QY1A 2QX3A 3T9GA 2Z8GA 3ZSCA 3GRHA 2VBKA 3GQAA 1VBLA 1KTWA 1PLUA 2NT6A 1PE9A 2VJJA 2VBEA 4OZYA 1NHCA 4XNFA 4XOTA 1O8HA 2NTQA 1GQ8A 4OZZA 2IQ7A 2X6WA 4MXNA 4XN3A 4Z05A 1H80A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C2L A;  1KCD A;  1QCX A;  1X0C A;  1PXZ A;  2O1D A;  3GQ8 A;  4OJO A;  2NT9 A;  1IB4 A;  1O8K A;  2UVE A;  1DBG A;  1O8F A;  2INV A;  1JTA A;  2NZM A;  4XON A;  1O8M A;  1OFM A;  4XOP A;  3VSU A;  1OGM X;  2VJI A;  1HG8 A;  4XN0 A;  3SUC A;  2NTP A;  1XG2 A;  4AVZ A;  1OFL A;  4OJ6 A;  4XL9 A;  4XLC A;  2UVF A;  3VMW A;  2PYH A;  4YZA A;  4U4B A;  4XKW A;  1IA5 A;  1JRG A;  2O17 A;  4YEJ A;  1BN8 A;  3GQ9 A;  4YZQ A;  4NK6 A;  4XQF A;  3B4N A;  4W8S A;  1RMG A;  4Z03 A;  3FY3 A;  4NK8 A;  2X6Y A;  4YZX A;  1EE6 A;  1KCC A;  2QXZ A;  3EQO A;  4XLE A;  2O04 A;  4W8R A;  4OJ5 A;  5C1C A;  1O8D A;  1O8L A;  4XKV A;  2O0V A;  4Z06 A;  1RU4 A;  3VSV A;  2BSP A;  3VST A;  4XR6 A;  4OJP A;  2INU A;  4YZ0 A;  2EWE A;  3KRG A;  3B90 A;  3JUR A;  1OGO X;  4W8Q A;  1WMR A;  4OJL A;  2X3H A;  3WWG A;  1IDJ A;  3GQ7 A;  2NSP A;  4HWV A;  4XLF A;  3EQN A;  1O88 A;  2O0W A;  4EW9 A;  4XOR A;  4W8T A;  1AIR A;  4I84 A;  4PMH A;  4XLA A;  3ZPP A;  4XLH A;  3LMW A;  4YEL A;  3UW0 A;  5C1E A;  3B8Y A;  2ODL A;  1DBO A;  1OOC A;  5AMV A;  1O8I A;  2X6X A;  2VBM A;  2X85 A;  2NTB A;  1K5C A;  2PYG A;  1O8J A;  1IDK A;  2NST A;  1RWR A;  1CZF A;  4U49 A;  4URR A;  2PEC A;  4XMY A;  4MR0 A;  1O8G A;  3VMV A;  1O8E A;  4XM3 A;  1BHE A;  1QJV A;  2QY1 A;  2QX3 A;  3T9G A;  2Z8G A;  3ZSC A;  3GRH A;  2VBK A;  3GQA A;  1VBL A;  1KTW A;  1PLU A;  2NT6 A;  1PE9 A;  2VJJ A;  2VBE A;  4OZY A;  1NHC A;  4XNF A;  4XOT A;  1O8H A;  2NTQ A;  1GQ8 A;  4OZZ A;  2IQ7 A;  2X6W A;  4MXN A;  4XN3 A;  4Z05 A;  1H80 A; 
#chains in the Genus database with same CATH topology
 4C2L A;  1KCD A;  3SQV A;  1QCX A;  1X0C A;  1PXZ A;  2O1D A;  3GQ8 A;  4OJO A;  1WXR A;  3LJY A;  2XTW A;  2NT9 A;  1IB4 A;  1O8K A;  2XC1 A;  2UVE A;  1DBG A;  1O8F A;  2INV A;  1JTA A;  2NZM A;  3ML3 A;  1O8M A;  1OFM A;  3N90 A;  1EZG A;  4XON A;  4XOP A;  3VSU A;  1L1I A;  1OGM X;  2VJI A;  3PET A;  3SY2 A;  1HG8 A;  4XN0 A;  4YCQ A;  3SUC A;  2NTP A;  5JMC B;  1XG2 A;  4AVZ A;  1OFL A;  3BH7 B;  4OJ6 A;  4XL9 A;  4XLC A;  2UVF A;  3SYJ A;  3VMW A;  2PYH A;  4YZA A;  1QRC A;  2XT2 A;  4U4B A;  4XKW A;  1IA5 A;  1JRG A;  3NB2 A;  2O17 A;  3H09 A;  2V5I A;  4YEJ A;  2VFN A;  1TYV A;  1QA2 A;  1QQ1 A;  1TYX A;  1BN8 A;  1OFD A;  2QYU A;  2VFO A;  3GQ9 A;  4NK6 A;  1TYW A;  3B4N A;  4YZQ A;  2BM6 A;  4XQF A;  5JLV C;  4W8S A;  1RMG A;  3BH6 B;  4OM9 A;  3FY3 A;  2VFM A;  4Z03 A;  1QA1 A;  4NK8 A;  2X6Y A;  4YZX A;  1EE6 A;  4JRA C;  1KCC A;  2QXZ A;  3EQO A;  4XLE A;  2O04 A;  4W8R A;  4OJ5 A;  5C1C A;  4YDT A;  3RIQ A;  3JX8 A;  3N6Z A;  1O8D A;  1O8L A;  4XKV A;  1DAB A;  2XTX A;  2O0V A;  3AK5 A;  4Z06 A;  1RU4 A;  3VSV A;  1EA0 A;  1KQ5 A;  2BSP A;  2QZA A;  4XR6 A;  3VST A;  1OFE A;  4OJP A;  4YC5 A;  2INU A;  2F3L A;  1LLW A;  2EWE A;  3KRG A;  4YZ0 A;  2YUH A;  3B90 A;  2G0Y A;  3JUR A;  1OGO X;  4W8Q A;  1WMR A;  2XT4 A;  4OJL A;  2X3H A;  3WWG A;  1IDJ A;  3GQ7 A;  2NSP A;  3LYC A;  4HWV A;  4XLF A;  3EQN A;  1O88 A;  2O0W A;  4EW9 A;  4XOR A;  4W8T A;  1AIR A;  4I84 A;  1LLZ A;  3PSS A;  4PMH A;  3TH0 A;  2W7Z A;  4XLA A;  3ZPP A;  4XLH A;  3LMW A;  4YEL A;  5DNS A;  3UW0 A;  5C1E A;  3B8Y A;  2ODL A;  2B0R A;  1DBO A;  1OOC A;  5AMV A;  1K8F A;  1O8I A;  2X6X A;  2J8I A;  2BM4 A;  2VBM A;  2NTB A;  2X85 A;  2PYG A;  1K5C A;  2IOU G;  1O8J A;  2XTY A;  1IDK A;  2NST A;  3P4G A;  2BX6 A;  1RWR A;  1CZF A;  4U49 A;  4URR A;  1HF2 A;  2PEC A;  4XMY A;  4MR0 A;  1TYU A;  3PSZ A;  1O8G A;  1K4Z A;  3DU1 X;  3VMV A;  1O8E A;  2BM7 A;  4XM3 A;  1BHE A;  1QRB A;  3NAW A;  1QJV A;  1LM1 A;  2QY1 A;  2QX3 A;  2Z8G A;  4YFO A;  3T9G A;  4KH3 A;  3ZSC A;  3GRH A;  1TSP A;  2VBK A;  3GQA A;  1VBL A;  1KTW A;  1PLU A;  2VFQ A;  2NT6 A;  1PE9 A;  2VJJ A;  2VBE A;  4OZY A;  3SZE A;  1NHC A;  1CLW A;  4XNF A;  4XOT A;  1O8H A;  1QA3 A;  2NTQ A;  2VFP A;  4V02 C;  1GQ8 A;  4OZZ A;  2O6W A;  2IQ7 A;  2X6W A;  2BM5 A;  4MXN A;  4YEI A;  4OPW A;  4XN3 A;  4Z05 A;  2J8K A;  1H80 A; 
#chains in the Genus database with same CATH homology
 4C2L A;  1KCD A;  1QCX A;  1X0C A;  1PXZ A;  2O1D A;  3GQ8 A;  4OJO A;  2NT9 A;  1IB4 A;  1O8K A;  2UVE A;  1DBG A;  1O8F A;  2INV A;  1JTA A;  2NZM A;  4XON A;  1O8M A;  1OFM A;  4XOP A;  3VSU A;  1OGM X;  2VJI A;  1HG8 A;  4XN0 A;  3SUC A;  2NTP A;  1XG2 A;  4AVZ A;  1OFL A;  4OJ6 A;  4XL9 A;  4XLC A;  2UVF A;  3VMW A;  2PYH A;  4YZA A;  4U4B A;  4XKW A;  1IA5 A;  1JRG A;  2O17 A;  4YEJ A;  1BN8 A;  3GQ9 A;  4YZQ A;  4NK6 A;  4XQF A;  3B4N A;  4W8S A;  1RMG A;  4Z03 A;  3FY3 A;  4NK8 A;  2X6Y A;  4YZX A;  1EE6 A;  1KCC A;  2QXZ A;  3EQO A;  4XLE A;  2O04 A;  4W8R A;  4OJ5 A;  5C1C A;  1O8D A;  1O8L A;  4XKV A;  2O0V A;  4Z06 A;  1RU4 A;  3VSV A;  2BSP A;  3VST A;  4XR6 A;  4OJP A;  2INU A;  4YZ0 A;  2EWE A;  3KRG A;  3B90 A;  3JUR A;  1OGO X;  4W8Q A;  1WMR A;  4OJL A;  2X3H A;  3WWG A;  1IDJ A;  3GQ7 A;  2NSP A;  4HWV A;  4XLF A;  3EQN A;  1O88 A;  2O0W A;  4EW9 A;  4XOR A;  4W8T A;  1AIR A;  4I84 A;  4PMH A;  4XLA A;  3ZPP A;  4XLH A;  3LMW A;  4YEL A;  3UW0 A;  5C1E A;  3B8Y A;  2ODL A;  1DBO A;  1OOC A;  5AMV A;  1O8I A;  2X6X A;  2VBM A;  2X85 A;  2NTB A;  1K5C A;  2PYG A;  1O8J A;  1IDK A;  2NST A;  1RWR A;  1CZF A;  4U49 A;  4URR A;  2PEC A;  4XMY A;  4MR0 A;  1O8G A;  3VMV A;  1O8E A;  4XM3 A;  1BHE A;  1QJV A;  2QY1 A;  2QX3 A;  3T9G A;  2Z8G A;  3ZSC A;  3GRH A;  2VBK A;  3GQA A;  1VBL A;  1KTW A;  1PLU A;  2NT6 A;  1PE9 A;  2VJJ A;  2VBE A;  4OZY A;  1NHC A;  4XNF A;  4XOT A;  1O8H A;  2NTQ A;  1GQ8 A;  4OZZ A;  2IQ7 A;  2X6W A;  4MXN A;  4XN3 A;  4Z05 A;  1H80 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...