1HA4A

Gammas crystallin c terminal domain from homo sapiens
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
87
structure length
87
Chain Sequence
GQYKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRIVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Eye lens protein
molecule keywords GAMMA CRYSTALLIN S
publication title The X-Ray Crystal Structure of Human Gamma S-Crystallin C-Terminal Domain
pubmed doi rcsb
source organism Homo sapiens
total genus 18
structure length 87
sequence length 87
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1ha4A00
1M8UA 5HT9A 1GAMA 1ZIEA 2M3TA 1PRSA 3SO1A 1AG4A 3LWKA 1DSLA 1ZWOA 4EL6A 1OKIA 2B1OA 4AKAA 1BD7A 2K1WA 3QK3A 1YHPA 1I5IA 1NPSA 4NI3A 4W9AA 2A5MA 1YTQA 1ZIRA 1ZIQA 2NBRA 1A7HA 3IAJA 4IAUA 1HA4A 1E7NA 2JDFA 1GCSA 2KFBA 2V2UA 4GCRA 5HT8A 4JGFA 1ELPA 3SNYA 1ZWMA 4PSRA 2BV2A 1HDFA 4W9BA 1HK0X 1H4AX 1ZGTA 1AMMA 1PRRA 2DADA 2KP5A 3SNZA 3HZ2A 2M3UA 4FD9A 2JDGA 4PSPA 3ENTA 3HZBA 3I9HA 1A45A 2BB2A 3ENUA 1BLBA 2M3CA 2G98A 3CW3A 4GR7A 2K1XA 3SO0A 1A5DA
chains in the Genus database with same CATH superfamily
1M8UA 1GAMA 3UJZA 4EL6A 2B1OA 1BD7A 3QK3A 1ZIQA 1GCSA 1ELPA 3SNYA 4PSRA 2BV2A 2DADA 1AMMA 4FD9A 3CW3A 4GR7A 1BHUA 2K1XA 1A5DA 1ZWOA 1OKIA 2K1WA 1I5IA 4W9AA 2NBRA 1A7HA 4IAUA 1E7NA 2V2UA 1C01A 1HDFA 1PRRA 2M3UA 3HZBA 2M3CA 2G98A 5HT9A 1PRSA 3SO1A 1AG4A 1DSLA 1G6EA 1NPSA 2A5MA 2JDFA 4JGFA 1ZWMA 4W9BA 1HK0X 1H4AX 3HZ2A 4PSPA 3ENTA 2BB2A 3ENUA 1ZIEA 2M3TA 3LWKA 1F53A 4AKAA 1YHPA 4NI3A 1YTQA 1ZIRA 3IAJA 1HA4A 2KFBA 4GCRA 5HT8A 1GH5A 1ZGTA 3SNZA 2KP5A 2JDGA 1WKTA 3I9HA 1A45A 1BLBA 3SO0A
chains in the Genus database with same CATH topology
1M8UA 5HT9A 1GAMA 1ZIEA 2M3TA 1PRSA 3SO1A 1AG4A 3LWKA 1DSLA 1ZWOA 4EL6A 1OKIA 2B1OA 4AKAA 1BD7A 2K1WA 3QK3A 1YHPA 1I5IA 1NPSA 4NI3A 4W9AA 2A5MA 1YTQA 1ZIRA 1ZIQA 2NBRA 1A7HA 3IAJA 4IAUA 1HA4A 1E7NA 2JDFA 1GCSA 2KFBA 2V2UA 4GCRA 5HT8A 4JGFA 1ELPA 3SNYA 1ZWMA 4PSRA 2BV2A 1HDFA 4W9BA 1HK0X 1H4AX 1ZGTA 1AMMA 1PRRA 2DADA 2KP5A 3SNZA 3HZ2A 2M3UA 4FD9A 2JDGA 4PSPA 3ENTA 3HZBA 3I9HA 1A45A 2BB2A 3ENUA 1BLBA 2M3CA 2G98A 3CW3A 4GR7A 2K1XA 3SO0A 1A5DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M8U A;  5HT9 A;  1GAM A;  1ZIE A;  2M3T A;  1PRS A;  3SO1 A;  1AG4 A;  3LWK A;  1DSL A;  1ZWO A;  4EL6 A;  1OKI A;  2B1O A;  4AKA A;  1BD7 A;  2K1W A;  3QK3 A;  1YHP A;  1I5I A;  1NPS A;  4NI3 A;  4W9A A;  2A5M A;  1YTQ A;  1ZIR A;  1ZIQ A;  2NBR A;  1A7H A;  3IAJ A;  4IAU A;  1HA4 A;  1E7N A;  2JDF A;  1GCS A;  2KFB A;  2V2U A;  4GCR A;  5HT8 A;  4JGF A;  1ELP A;  3SNY A;  1ZWM A;  4PSR A;  2BV2 A;  1HDF A;  4W9B A;  1HK0 X;  1H4A X;  1ZGT A;  1AMM A;  1PRR A;  2DAD A;  2KP5 A;  3SNZ A;  3HZ2 A;  2M3U A;  4FD9 A;  2JDG A;  4PSP A;  3ENT A;  3HZB A;  3I9H A;  1A45 A;  2BB2 A;  3ENU A;  1BLB A;  2M3C A;  2G98 A;  3CW3 A;  4GR7 A;  2K1X A;  3SO0 A;  1A5D A; 
#chains in the Genus database with same CATH topology
 1M8U A;  1GAM A;  3UJZ A;  4EL6 A;  2B1O A;  1BD7 A;  3QK3 A;  1ZIQ A;  1GCS A;  1ELP A;  3SNY A;  4PSR A;  2BV2 A;  2DAD A;  1AMM A;  4FD9 A;  3CW3 A;  4GR7 A;  1BHU A;  2K1X A;  1A5D A;  1ZWO A;  1OKI A;  2K1W A;  1I5I A;  4W9A A;  2NBR A;  1A7H A;  4IAU A;  1E7N A;  2V2U A;  1C01 A;  1HDF A;  1PRR A;  2M3U A;  3HZB A;  2M3C A;  2G98 A;  5HT9 A;  1PRS A;  3SO1 A;  1AG4 A;  1DSL A;  1G6E A;  1NPS A;  2A5M A;  2JDF A;  4JGF A;  1ZWM A;  4W9B A;  1HK0 X;  1H4A X;  3HZ2 A;  4PSP A;  3ENT A;  2BB2 A;  3ENU A;  1ZIE A;  2M3T A;  3LWK A;  1F53 A;  4AKA A;  1YHP A;  4NI3 A;  1YTQ A;  1ZIR A;  3IAJ A;  1HA4 A;  2KFB A;  4GCR A;  5HT8 A;  1GH5 A;  1ZGT A;  3SNZ A;  2KP5 A;  2JDG A;  1WKT A;  3I9H A;  1A45 A;  1BLB A;  3SO0 A; 
#chains in the Genus database with same CATH homology
 1M8U A;  5HT9 A;  1GAM A;  1ZIE A;  2M3T A;  1PRS A;  3SO1 A;  1AG4 A;  3LWK A;  1DSL A;  1ZWO A;  4EL6 A;  1OKI A;  2B1O A;  4AKA A;  1BD7 A;  2K1W A;  3QK3 A;  1YHP A;  1I5I A;  1NPS A;  4NI3 A;  4W9A A;  2A5M A;  1YTQ A;  1ZIR A;  1ZIQ A;  2NBR A;  1A7H A;  3IAJ A;  4IAU A;  1HA4 A;  1E7N A;  2JDF A;  1GCS A;  2KFB A;  2V2U A;  4GCR A;  5HT8 A;  4JGF A;  1ELP A;  3SNY A;  1ZWM A;  4PSR A;  2BV2 A;  1HDF A;  4W9B A;  1HK0 X;  1H4A X;  1ZGT A;  1AMM A;  1PRR A;  2DAD A;  2KP5 A;  3SNZ A;  3HZ2 A;  2M3U A;  4FD9 A;  2JDG A;  4PSP A;  3ENT A;  3HZB A;  3I9H A;  1A45 A;  2BB2 A;  3ENU A;  1BLB A;  2M3C A;  2G98 A;  3CW3 A;  4GR7 A;  2K1X A;  3SO0 A;  1A5D A; 
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similar chains in the Genus database (?% sequence similarity)
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