1HB6A

Structure of bovine acyl-coa binding protein in orthorhombic crystal form
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
86
structure length
86
Chain Sequence
SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Binding Site Differences Revealed by Crystal Structures of Plasmodium Falciparum and Bovine Acyl-Coa Binding Protein
pubmed doi rcsb
molecule tags Acyl-coenzyme a binding protein
molecule keywords ACYL-COA BINDING PROTEIN
total genus 36
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2001-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 1hb6A00
2CQUA 3EPYA 3ZDTA 3AU4A 3G9WA 2I1JA 4ZRIA 4P7IA 4ZRJA 1HB8A 3FLVA 1MIXA 1HB6A 2D10A 1NVLA 2EMTA 2YVCA 2FJ9A 2AEHA 2HRJA 2ABDA 4NY0A 1MK7B 2CB8A 2J0MA 4HDQA 4ZRKA 1H4RA 1EF1A 4EKUA 5IJMA 2EMSA 2WH5A 3AU5A 2AL6A 3WA0A 1GC6A 1Y19B 3FP5A 1SGHA 2FDQA 3U8ZA 1J19A 1ACAA 1GC7A 2RQ1A 2HE7A 1NI2A 3BINA 2J0KA 3PVLA 2I1KA 4DXAB 2J0JA 2ZPYA 2D2QA 3PZDA 1ISNA 1GG3A 4F7GA 1ST7A 1MIZB 2D11A 4HDOA 3U7DA 2COPA 2LBBA 3QIJA 4CYEA 4YL8A 1E5WA 1MK9B 3X23A 1HBKA 3IVFA 1NTIA
chains in the Genus database with same CATH superfamily
2CQUA 3EPYA 4ZRJA 2I1JA 4P7IA 2YVCA 2ABDA 2CB8A 4ZRKA 4JK8A 2AL6A 1VBHA 3WA0A 1GC6A 3FP5A 1SGHA 1ACAA 4JKCA 2RQ1A 4JKEA 3PVLA 3SBTA 4ILJA 2ZPYA 1ISNA 4F7GA 1KC7A 1GGOA 2COPA 4CYEA 3AU4A 3FLVA 4ILGB 1MIXA 1NVLA 3SBGA 2FJ9A 1MK7B 2DIKA 2J0MA 4HDQA 4JKBA 4EKUA 5IJMA 3ENBA 2EMSA 2WH5A 3AU5A 2FDQA 3U8ZA 4ILHA 3E9OA 1NI2A 3BINA 2I1KA 2D2QA 4HDOA 4JKAA 3E9LA 3U7DA 1KBLA 4YL8A 3X23A 4ZRIA 2D10A 2AEHA 2HRJA 4JKHA 1Y19B 4JK9A 4JKGA 1GC7A 4JKGB 2X0SA 3PZDA 1ST7A 1MIZB 2D11A 2R82A 3QIJA 4TKNA 1JDEA 1MK9B 5JVLA 1VBGA 3IVFA 1NTIA 3ZDTA 3G9WA 1HB8A 4JKFA 3E9PA 1HB6A 2EMTA 4NY0A 3E66A 1H4RA 1EF1A 4GXBA 4JKDA 1J19A 4JK7A 2HE7A 2J0KA 4DXAB 2J0JA 1GG3A 2LBBA 1E5WA 1DIKA 1HBKA
chains in the Genus database with same CATH topology
2CQUA 3EPYA 4ZRJA 2I1JA 4P7IA 2YVCA 2ABDA 2CB8A 4ZRKA 4JK8A 2AL6A 1VBHA 3WA0A 1GC6A 3FP5A 1SGHA 1ACAA 4JKCA 2RQ1A 4JKEA 3PVLA 3SBTA 4ILJA 2ZPYA 1ISNA 4F7GA 1KC7A 1GGOA 2COPA 4CYEA 3AU4A 3FLVA 4ILGB 1MIXA 1NVLA 3SBGA 2FJ9A 1MK7B 2DIKA 2J0MA 4HDQA 4JKBA 4EKUA 5IJMA 3ENBA 2EMSA 2WH5A 3AU5A 2FDQA 3U8ZA 4ILHA 3E9OA 1NI2A 3BINA 2I1KA 2D2QA 4HDOA 4JKAA 3E9LA 3U7DA 1KBLA 4YL8A 3X23A 4ZRIA 2D10A 2AEHA 2HRJA 4JKHA 1Y19B 4JK9A 4JKGA 1GC7A 4JKGB 2X0SA 3PZDA 1ST7A 1MIZB 2D11A 2R82A 3QIJA 4TKNA 1JDEA 1MK9B 5JVLA 1VBGA 3IVFA 1NTIA 3ZDTA 3G9WA 1HB8A 4JKFA 3E9PA 1HB6A 2EMTA 4NY0A 3E66A 1H4RA 1EF1A 4GXBA 4JKDA 1J19A 4JK7A 2HE7A 2J0KA 4DXAB 2J0JA 1GG3A 2LBBA 1E5WA 1DIKA 1HBKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CQU A;  3EPY A;  3ZDT A;  3AU4 A;  3G9W A;  2I1J A;  4ZRI A;  4P7I A;  4ZRJ A;  1HB8 A;  3FLV A;  1MIX A;  1HB6 A;  2D10 A;  1NVL A;  2EMT A;  2YVC A;  2FJ9 A;  2AEH A;  2HRJ A;  2ABD A;  4NY0 A;  1MK7 B;  2CB8 A;  2J0M A;  4HDQ A;  4ZRK A;  1H4R A;  1EF1 A;  4EKU A;  5IJM A;  2EMS A;  2WH5 A;  3AU5 A;  2AL6 A;  3WA0 A;  1GC6 A;  1Y19 B;  3FP5 A;  1SGH A;  2FDQ A;  3U8Z A;  1J19 A;  1ACA A;  1GC7 A;  2RQ1 A;  2HE7 A;  1NI2 A;  3BIN A;  2J0K A;  3PVL A;  2I1K A;  4DXA B;  2J0J A;  2ZPY A;  2D2Q A;  3PZD A;  1ISN A;  1GG3 A;  4F7G A;  1ST7 A;  1MIZ B;  2D11 A;  4HDO A;  3U7D A;  2COP A;  2LBB A;  3QIJ A;  4CYE A;  4YL8 A;  1E5W A;  1MK9 B;  3X23 A;  1HBK A;  3IVF A;  1NTI A; 
#chains in the Genus database with same CATH topology
 2CQU A;  3EPY A;  4ZRJ A;  2I1J A;  4P7I A;  2YVC A;  2ABD A;  2CB8 A;  4ZRK A;  4JK8 A;  2AL6 A;  1VBH A;  3WA0 A;  1GC6 A;  3FP5 A;  1SGH A;  1ACA A;  4JKC A;  2RQ1 A;  4JKE A;  3PVL A;  3SBT A;  4ILJ A;  2ZPY A;  1ISN A;  4F7G A;  1KC7 A;  1GGO A;  2COP A;  4CYE A;  3AU4 A;  3FLV A;  4ILG B;  1MIX A;  1NVL A;  3SBG A;  2FJ9 A;  1MK7 B;  2DIK A;  2J0M A;  4HDQ A;  4JKB A;  4EKU A;  5IJM A;  3ENB A;  2EMS A;  2WH5 A;  3AU5 A;  2FDQ A;  3U8Z A;  4ILH A;  3E9O A;  1NI2 A;  3BIN A;  2I1K A;  2D2Q A;  4HDO A;  4JKA A;  3E9L A;  3U7D A;  1KBL A;  4YL8 A;  3X23 A;  4ZRI A;  2D10 A;  2AEH A;  2HRJ A;  4JKH A;  1Y19 B;  4JK9 A;  4JKG A;  1GC7 A;  4JKG B;  2X0S A;  3PZD A;  1ST7 A;  1MIZ B;  2D11 A;  2R82 A;  3QIJ A;  4TKN A;  1JDE A;  1MK9 B;  5JVL A;  1VBG A;  3IVF A;  1NTI A;  3ZDT A;  3G9W A;  1HB8 A;  4JKF A;  3E9P A;  1HB6 A;  2EMT A;  4NY0 A;  3E66 A;  1H4R A;  1EF1 A;  4GXB A;  4JKD A;  1J19 A;  4JK7 A;  2HE7 A;  2J0K A;  4DXA B;  2J0J A;  1GG3 A;  2LBB A;  1E5W A;  1DIK A;  1HBK A; 
#chains in the Genus database with same CATH homology
 2CQU A;  3EPY A;  4ZRJ A;  2I1J A;  4P7I A;  2YVC A;  2ABD A;  2CB8 A;  4ZRK A;  4JK8 A;  2AL6 A;  1VBH A;  3WA0 A;  1GC6 A;  3FP5 A;  1SGH A;  1ACA A;  4JKC A;  2RQ1 A;  4JKE A;  3PVL A;  3SBT A;  4ILJ A;  2ZPY A;  1ISN A;  4F7G A;  1KC7 A;  1GGO A;  2COP A;  4CYE A;  3AU4 A;  3FLV A;  4ILG B;  1MIX A;  1NVL A;  3SBG A;  2FJ9 A;  1MK7 B;  2DIK A;  2J0M A;  4HDQ A;  4JKB A;  4EKU A;  5IJM A;  3ENB A;  2EMS A;  2WH5 A;  3AU5 A;  2FDQ A;  3U8Z A;  4ILH A;  3E9O A;  1NI2 A;  3BIN A;  2I1K A;  2D2Q A;  4HDO A;  4JKA A;  3E9L A;  3U7D A;  1KBL A;  4YL8 A;  3X23 A;  4ZRI A;  2D10 A;  2AEH A;  2HRJ A;  4JKH A;  1Y19 B;  4JK9 A;  4JKG A;  1GC7 A;  4JKG B;  2X0S A;  3PZD A;  1ST7 A;  1MIZ B;  2D11 A;  2R82 A;  3QIJ A;  4TKN A;  1JDE A;  1MK9 B;  5JVL A;  1VBG A;  3IVF A;  1NTI A;  3ZDT A;  3G9W A;  1HB8 A;  4JKF A;  3E9P A;  1HB6 A;  2EMT A;  4NY0 A;  3E66 A;  1H4R A;  1EF1 A;  4GXB A;  4JKD A;  1J19 A;  4JK7 A;  2HE7 A;  2J0K A;  4DXA B;  2J0J A;  1GG3 A;  2LBB A;  1E5W A;  1DIK A;  1HBK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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