1HB8A

Structure of bovine acyl-coa binding protein in tetragonal crystal form
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
86
structure length
86
Chain Sequence
SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Binding Site Differences Revealed by Crystal Structures of Plasmodium Falciparum and Bovine Acyl-Coa Binding Protein
pubmed doi rcsb
molecule tags Acyl-coenzyme a binding protein
molecule keywords ACYL-COA BINDING PROTEIN
total genus 35
structure length 86
sequence length 86
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2001-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 1hb8A00
2FDQA 2YVCA 1GG3A 4HDOA 4ZRJA 3FP5A 1H4RA 1HB6A 1ST7A 4YL8A 4HDQA 4F7GA 2HRJA 1NI2A 1NTIA 1MK9B 4ZRKA 3IVFA 3X23A 3U8ZA 3EPYA 4CYEA 2D11A 2D10A 1ACAA 1NVLA 1MIZB 1MK7B 2ZPYA 4ZRIA 2WH5A 4P7IA 4NY0A 3AU5A 1ISNA 2AL6A 3U7DA 5IJMA 1J19A 2ABDA 2COPA 2J0KA 2J0JA 3G9WA 3FLVA 2AEHA 3PVLA 2D2QA 3AU4A 4EKUA 2EMTA 2EMSA 3QIJA 2CQUA 3PZDA 1GC6A 1MIXA 2FJ9A 2RQ1A 3WA0A 1EF1A 4DXAB 1SGHA 2I1JA 2J0MA 1GC7A 1HB8A 1Y19B 2HE7A 2LBBA 2I1KA 2CB8A 1E5WA 1HBKA 3BINA 3ZDTA
chains in the Genus database with same CATH superfamily
4ZRJA 2YVCA 1GG3A 1HB6A 3SBTA 2HRJA 1NI2A 1NTIA 4ZRKA 2D11A 1NVLA 1KC7A 1MK7B 4P7IA 1GGOA 4GXBA 2AL6A 4TKNA 4ILJA 1J19A 3E9LA 4JKHA 3PVLA 2AEHA 2EMTA 4JKCA 4JKGB 2EMSA 1HBKA 2DIKA 2FJ9A 1SGHA 2HE7A 2LBBA 1E5WA 4HDOA 3FP5A 3IVFA 3E66A 3U8ZA 2D10A 4ZRIA 1VBGA 3U7DA 2ABDA 2D2QA 4JKDA 1GC6A 3WA0A 1Y19B 3EPYA 2J0JA 4ILHA 2FDQA 3SBGA 4YL8A 1MK9B 3X23A 1MIZB 2ZPYA 2R82A 4NY0A 3AU5A 5IJMA 2J0KA 3G9WA 3FLVA 4JKEA 1KBLA 1DIKA 3AU4A 3E9PA 4JKBA 4EKUA 4JKGA 3QIJA 1JDEA 4ILGB 1MIXA 2RQ1A 4JKAA 2J0MA 1GC7A 4JK7A 3ZDTA 4DXAB 4JK9A 1H4RA 1ST7A 4HDQA 4F7GA 4CYEA 4JK8A 1ACAA 2WH5A 1VBHA 1ISNA 2COPA 4JKFA 2X0SA 2CQUA 3PZDA 5JVLA 1EF1A 2I1JA 3E9OA 1HB8A 2I1KA 2CB8A 3ENBA 3BINA
chains in the Genus database with same CATH topology
4ZRJA 2YVCA 1GG3A 1HB6A 3SBTA 2HRJA 1NI2A 1NTIA 4ZRKA 2D11A 1NVLA 1KC7A 1MK7B 4P7IA 1GGOA 4GXBA 2AL6A 4TKNA 4ILJA 1J19A 3E9LA 4JKHA 3PVLA 2AEHA 2EMTA 4JKCA 4JKGB 2EMSA 1HBKA 2DIKA 2FJ9A 1SGHA 2HE7A 2LBBA 1E5WA 4HDOA 3FP5A 3IVFA 3E66A 3U8ZA 2D10A 4ZRIA 1VBGA 3U7DA 2ABDA 2D2QA 4JKDA 1GC6A 3WA0A 1Y19B 3EPYA 2J0JA 4ILHA 2FDQA 3SBGA 4YL8A 1MK9B 3X23A 1MIZB 2ZPYA 2R82A 4NY0A 3AU5A 5IJMA 2J0KA 3G9WA 3FLVA 4JKEA 1KBLA 1DIKA 3AU4A 3E9PA 4JKBA 4EKUA 4JKGA 3QIJA 1JDEA 4ILGB 1MIXA 2RQ1A 4JKAA 2J0MA 1GC7A 4JK7A 3ZDTA 4DXAB 4JK9A 1H4RA 1ST7A 4HDQA 4F7GA 4CYEA 4JK8A 1ACAA 2WH5A 1VBHA 1ISNA 2COPA 4JKFA 2X0SA 2CQUA 3PZDA 5JVLA 1EF1A 2I1JA 3E9OA 1HB8A 2I1KA 2CB8A 3ENBA 3BINA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FDQ A;  2YVC A;  1GG3 A;  4HDO A;  4ZRJ A;  3FP5 A;  1H4R A;  1HB6 A;  1ST7 A;  4YL8 A;  4HDQ A;  4F7G A;  2HRJ A;  1NI2 A;  1NTI A;  1MK9 B;  4ZRK A;  3IVF A;  3X23 A;  3U8Z A;  3EPY A;  4CYE A;  2D11 A;  2D10 A;  1ACA A;  1NVL A;  1MIZ B;  1MK7 B;  2ZPY A;  4ZRI A;  2WH5 A;  4P7I A;  4NY0 A;  3AU5 A;  1ISN A;  2AL6 A;  3U7D A;  5IJM A;  1J19 A;  2ABD A;  2COP A;  2J0K A;  2J0J A;  3G9W A;  3FLV A;  2AEH A;  3PVL A;  2D2Q A;  3AU4 A;  4EKU A;  2EMT A;  2EMS A;  3QIJ A;  2CQU A;  3PZD A;  1GC6 A;  1MIX A;  2FJ9 A;  2RQ1 A;  3WA0 A;  1EF1 A;  4DXA B;  1SGH A;  2I1J A;  2J0M A;  1GC7 A;  1HB8 A;  1Y19 B;  2HE7 A;  2LBB A;  2I1K A;  2CB8 A;  1E5W A;  1HBK A;  3BIN A;  3ZDT A; 
#chains in the Genus database with same CATH topology
 4ZRJ A;  2YVC A;  1GG3 A;  1HB6 A;  3SBT A;  2HRJ A;  1NI2 A;  1NTI A;  4ZRK A;  2D11 A;  1NVL A;  1KC7 A;  1MK7 B;  4P7I A;  1GGO A;  4GXB A;  2AL6 A;  4TKN A;  4ILJ A;  1J19 A;  3E9L A;  4JKH A;  3PVL A;  2AEH A;  2EMT A;  4JKC A;  4JKG B;  2EMS A;  1HBK A;  2DIK A;  2FJ9 A;  1SGH A;  2HE7 A;  2LBB A;  1E5W A;  4HDO A;  3FP5 A;  3IVF A;  3E66 A;  3U8Z A;  2D10 A;  4ZRI A;  1VBG A;  3U7D A;  2ABD A;  2D2Q A;  4JKD A;  1GC6 A;  3WA0 A;  1Y19 B;  3EPY A;  2J0J A;  4ILH A;  2FDQ A;  3SBG A;  4YL8 A;  1MK9 B;  3X23 A;  1MIZ B;  2ZPY A;  2R82 A;  4NY0 A;  3AU5 A;  5IJM A;  2J0K A;  3G9W A;  3FLV A;  4JKE A;  1KBL A;  1DIK A;  3AU4 A;  3E9P A;  4JKB A;  4EKU A;  4JKG A;  3QIJ A;  1JDE A;  4ILG B;  1MIX A;  2RQ1 A;  4JKA A;  2J0M A;  1GC7 A;  4JK7 A;  3ZDT A;  4DXA B;  4JK9 A;  1H4R A;  1ST7 A;  4HDQ A;  4F7G A;  4CYE A;  4JK8 A;  1ACA A;  2WH5 A;  1VBH A;  1ISN A;  2COP A;  4JKF A;  2X0S A;  2CQU A;  3PZD A;  5JVL A;  1EF1 A;  2I1J A;  3E9O A;  1HB8 A;  2I1K A;  2CB8 A;  3ENB A;  3BIN A; 
#chains in the Genus database with same CATH homology
 4ZRJ A;  2YVC A;  1GG3 A;  1HB6 A;  3SBT A;  2HRJ A;  1NI2 A;  1NTI A;  4ZRK A;  2D11 A;  1NVL A;  1KC7 A;  1MK7 B;  4P7I A;  1GGO A;  4GXB A;  2AL6 A;  4TKN A;  4ILJ A;  1J19 A;  3E9L A;  4JKH A;  3PVL A;  2AEH A;  2EMT A;  4JKC A;  4JKG B;  2EMS A;  1HBK A;  2DIK A;  2FJ9 A;  1SGH A;  2HE7 A;  2LBB A;  1E5W A;  4HDO A;  3FP5 A;  3IVF A;  3E66 A;  3U8Z A;  2D10 A;  4ZRI A;  1VBG A;  3U7D A;  2ABD A;  2D2Q A;  4JKD A;  1GC6 A;  3WA0 A;  1Y19 B;  3EPY A;  2J0J A;  4ILH A;  2FDQ A;  3SBG A;  4YL8 A;  1MK9 B;  3X23 A;  1MIZ B;  2ZPY A;  2R82 A;  4NY0 A;  3AU5 A;  5IJM A;  2J0K A;  3G9W A;  3FLV A;  4JKE A;  1KBL A;  1DIK A;  3AU4 A;  3E9P A;  4JKB A;  4EKU A;  4JKG A;  3QIJ A;  1JDE A;  4ILG B;  1MIX A;  2RQ1 A;  4JKA A;  2J0M A;  1GC7 A;  4JK7 A;  3ZDT A;  4DXA B;  4JK9 A;  1H4R A;  1ST7 A;  4HDQ A;  4F7G A;  4CYE A;  4JK8 A;  1ACA A;  2WH5 A;  1VBH A;  1ISN A;  2COP A;  4JKF A;  2X0S A;  2CQU A;  3PZD A;  5JVL A;  1EF1 A;  2I1J A;  3E9O A;  1HB8 A;  2I1K A;  2CB8 A;  3ENB A;  3BIN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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