1HBMC

Methyl-coenzyme m reductase enzyme product complex
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
247
structure length
247
Chain Sequence
AQYYPGTTKVAQNRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDAIREMVEPIDGAKAGDRVRYIQFTDSMYFAPAQPYVRSRAYLCRYRGADAGTLSGRQIIETRERDLEKISKELLETEFFDPARSGVRGKSVHGHSLRLDEDGMMFDMLRRQIYNKDTGRVEMVKNQIGDELDEPVDLGEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIHVLRSQGGFNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Methanogenesis
molecule keywords METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT
publication title On the Mechanism of Biological Methane Formation: Structural Evidence for Conformational Changes in Methyl-Coenzyme M Reductase Upon Substrate Binding
pubmed doi rcsb
total genus 80
structure length 247
sequence length 247
chains with identical sequence F
ec nomenclature ec 2.8.4.1: Coenzyme-B sulfoethylthiotransferase.
pdb deposition date 2001-04-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02240 MCR_gamma Methyl-coenzyme M reductase gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.320.20 Alpha Beta Alpha-Beta Complex Lambda Exonuclease; Chain A Methyl-coenzyme M reductase, gamma subunit 1hbmC00
5A8KC 5A8RC 3M1VC 1E6VC 1HBMC 3M2VC 5G0RC 5A8WC 3POTC 1HBUC 1HBNC 3M32C 1HBOC 3SQGC 5A0YC 3M30C 3M2UC 1E6YC 1MROC 3M2RC
chains in the Genus database with same CATH superfamily
4CEJA 3U4QA 5A8KC 5A8RC 3M1VC 1E6VC 4WUZA 3U44A 1HBMC 4R5QA 3M2VC 4CEIA 5G0RC 4IC1A 5A8WC 3POTC 1HBUC 1HBNC 3M32C 5LD2B 3SZ5A 3SLPA 3H4RA 1HBOC 3K93A 3SQGC 5A0YC 3SM4A 3SZ4A 3K70B 3M30C 1W36B 3M2UC 4CEHA 3SYYA 1E6YC 1AVQA 1MROC 3L0AA 3M2RC
chains in the Genus database with same CATH topology
5A8KC 5A8RC 3M1VC 1E6VC 1HBMC 3M2VC 5G0RC 5A8WC 3POTC 1HBUC 1HBNC 3M32C 1HBOC 3SQGC 5A0YC 3M30C 3M2UC 1E6YC 1MROC 3M2RC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A8K C;  5A8R C;  3M1V C;  1E6V C;  1HBM C;  3M2V C;  5G0R C;  5A8W C;  3POT C;  1HBU C;  1HBN C;  3M32 C;  1HBO C;  3SQG C;  5A0Y C;  3M30 C;  3M2U C;  1E6Y C;  1MRO C;  3M2R C; 
#chains in the Genus database with same CATH topology
 4CEJ A;  3U4Q A;  5A8K C;  5A8R C;  3M1V C;  1E6V C;  4WUZ A;  3U44 A;  1HBM C;  4R5Q A;  3M2V C;  4CEI A;  5G0R C;  4IC1 A;  5A8W C;  3POT C;  1HBU C;  1HBN C;  3M32 C;  5LD2 B;  3SZ5 A;  3SLP A;  3H4R A;  1HBO C;  3K93 A;  3SQG C;  5A0Y C;  3SM4 A;  3SZ4 A;  3K70 B;  3M30 C;  1W36 B;  3M2U C;  4CEH A;  3SYY A;  1E6Y C;  1AVQ A;  1MRO C;  3L0A A;  3M2R C; 
#chains in the Genus database with same CATH homology
 5A8K C;  5A8R C;  3M1V C;  1E6V C;  1HBM C;  3M2V C;  5G0R C;  5A8W C;  3POT C;  1HBU C;  1HBN C;  3M32 C;  1HBO C;  3SQG C;  5A0Y C;  3M30 C;  3M2U C;  1E6Y C;  1MRO C;  3M2R C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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