The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
205
|
sequence length |
548
|
structure length |
543
|
Chain Sequence |
ADKLFINALKKKFEESPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQMWDDIRRTVIVGLNHAHAVIEKRLGKEVTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAFVIDINKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYKQAAGEAATGDFAYAAKAEVIHMGTYLPVRARGENEPGGVPFGYLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVGFTQYATAAYTDNILDDFTYFGKEYVEDKYGLCEAPNNMDTVLDVATEVTFYGLEQYEEYPALLEDQFGGSRAAVVAAAAGCSTAFATGNAQTGLSGWYLSMYLHKEQHSRLGFYYDLQDQGASNVFSIRGDEGLPLELRGPNYPNYAMNVGHQGEYAGISQAPHAARGDAFVFNPLVKIAFADDNLVFDFTNVRGEFAKGALREFEPAGERALITPA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
On the Mechanism of Biological Methane Formation: Structural Evidence for Conformational Changes in Methyl-Coenzyme M Reductase Upon Substrate Binding
pubmed doi rcsb |
| molecule keywords |
METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT
|
| molecule tags |
Methanogenesis
|
| total genus |
205
|
| structure length |
543
|
| sequence length |
548
|
| chains with identical sequence |
D
|
| ec nomenclature |
ec
2.8.4.1: Coenzyme-B sulfoethylthiotransferase. |
| pdb deposition date | 2001-04-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02249 | MCR_alpha | Methyl-coenzyme M reductase alpha subunit, C-terminal domain |
| A | PF02745 | MCR_alpha_N | Methyl-coenzyme M reductase alpha subunit, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Methyl-coenzyme M Reductase; Chain B, domain 2 | Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | ||
| Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Alpha-Beta Plaits | ||
| Alpha Beta | Alpha-Beta Complex | Methyl-coenzyme M Reductase; Chain A, domain 1 | Methyl-coenzyme M Reductase; Chain A, domain 1 |
