1HBZA

Catalase from micrococcus lysodeikticu
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
498
structure length
498
Chain Sequence
TTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYDLVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPKNHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQDVQARAFEYWKNVDATIGQRIEDEVKRHEGDGIPGVEAGGEARI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Three-Dimensional Structure of Catalase from Micrococcus Lysodeikticus at 1.5A Resolution
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords CATALASE
total genus 167
structure length 498
sequence length 498
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2001-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1hbzA00
1GWFA 1GGEA 4B31A 1GWEA 4B5KA 4CABA 4E37A 1P80A 1NM0A 4B40A 1IPHA 3PQ6A 4AULA 4AJ9A 3TTWA 1GGKA 4QOOA 4AUEA 1H6NA 3PQ8A 1QWMA 3TTVA 3PQ3A 2IQFA 1QWLA 4QOPA 3ZJ4A 1SY7A 3TTUA 4B7AA 4ENQA 1CF9A 1GG9A 4ENUA 1P7ZA 4B2YA 5BV2P 3PQ2A 3P9PA 1P81A 1GWHA 4QOLA 3VU3A 1A4EA 1M85A 2CAHA 3P9SA 3DY5A 1P7YA 1H7KA 4QOQA 3PQ4A 1M7SA 4BFLA 4ENRA 3PQ7A 1GGFA 2XF2A 1F4JA 4ENTA 3EJ6A 1GGJA 3PQ5A 1MQFA 4QORA 3P9RA 1QWSA 1HBZA 2J2MA 4ENVA 2A9EA 2ISAA 4QONA 2CAGA 1GGHA 3TTXA 1U5UA 3TTTA 3ZJ5A 3HB6A 3P9QA 4QOMA 4ENWA 1E93A 2XQ1A 4ENSA 1QF7A 2IUFA 1SI8A 4BIMA 4ENPA 4AUNA 4AUMA
chains in the Genus database with same CATH superfamily
3J7BA 1GWFA 1GGEA 4B31A 1GWEA 4B5KA 1TH3A 4CABA 4E37A 1P80A 1NM0A 1TGUA 4B40A 1IPHA 3PQ6A 4AULA 4AJ9A 3TTWA 1GGKA 4QOOA 1QQWA 4AUEA 1H6NA 3PQ8A 1QWMA 3TTVA 3PQ3A 2IQFA 3E4WA 1QWLA 4QOPA 3ZJ4A 1SY7A 3TTUA 4B7AA 4ENQA 1CF9A 1GG9A 4ENUA 1P7ZA 4B2YA 4B7GA 5BV2P 3PQ2A 3RE8A 7CATA 3P9PA 1P81A 4BLCA 1GWHA 4QOLA 3VU3A 1DGHA 4B7FA 1A4EA 1M85A 2CAHA 3P9SA 3DY5A 1P7YA 1H7KA 3E4YA 4QOQA 3PQ4A 1M7SA 4BFLA 4ENRA 3PQ7A 1GGFA 2XF2A 1DGBA 1F4JA 5GKNA 4ENTA 1TH2A 3EJ6A 1GGJA 3PQ5A 1MQFA 1DGHB 4QORA 1DGFA 3P9RA 1QWSA 1HBZA 2J2MA 1TH4A 4ENVA 2A9EA 2ISAA 4QONA 2CAGA 1GGHA 8CATA 3TTXA 3RGSA 1U5UA 3TTTA 4B7HA 3ZJ5A 3HB6A 3P9QA 4QOMA 4ENWA 1E93A 2XQ1A 3RGPA 3NWLA 4ENSA 1QF7A 2IUFA 1SI8A 4BIMA 4ENPA 1DGGA 4AUNA 4AUMA
chains in the Genus database with same CATH topology
1GWFA 1GGEA 4B31A 1GWEA 4B5KA 4CABA 4E37A 1P80A 1NM0A 4B40A 1IPHA 3PQ6A 4AULA 4AJ9A 3TTWA 1GGKA 4QOOA 4AUEA 1H6NA 3PQ8A 1QWMA 3TTVA 3PQ3A 2IQFA 1QWLA 4QOPA 3ZJ4A 1SY7A 3TTUA 4B7AA 4ENQA 1CF9A 1GG9A 4ENUA 1P7ZA 4B2YA 5BV2P 3PQ2A 3P9PA 1P81A 1GWHA 4QOLA 3VU3A 1A4EA 1M85A 2CAHA 3P9SA 3DY5A 1P7YA 1H7KA 4QOQA 3PQ4A 1M7SA 4BFLA 4ENRA 3PQ7A 1GGFA 2XF2A 1F4JA 4ENTA 3EJ6A 1GGJA 3PQ5A 1MQFA 4QORA 3P9RA 1QWSA 1HBZA 2J2MA 4ENVA 2A9EA 2ISAA 4QONA 2CAGA 1GGHA 3TTXA 1U5UA 3TTTA 3ZJ5A 3HB6A 3P9QA 4QOMA 4ENWA 1E93A 2XQ1A 4ENSA 1QF7A 2IUFA 1SI8A 4BIMA 4ENPA 4AUNA 4AUMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GWF A;  1GGE A;  4B31 A;  1GWE A;  4B5K A;  4CAB A;  4E37 A;  1P80 A;  1NM0 A;  4B40 A;  1IPH A;  3PQ6 A;  4AUL A;  4AJ9 A;  3TTW A;  1GGK A;  4QOO A;  4AUE A;  1H6N A;  3PQ8 A;  1QWM A;  3TTV A;  3PQ3 A;  2IQF A;  1QWL A;  4QOP A;  3ZJ4 A;  1SY7 A;  3TTU A;  4B7A A;  4ENQ A;  1CF9 A;  1GG9 A;  4ENU A;  1P7Z A;  4B2Y A;  5BV2 P;  3PQ2 A;  3P9P A;  1P81 A;  1GWH A;  4QOL A;  3VU3 A;  1A4E A;  1M85 A;  2CAH A;  3P9S A;  3DY5 A;  1P7Y A;  1H7K A;  4QOQ A;  3PQ4 A;  1M7S A;  4BFL A;  4ENR A;  3PQ7 A;  1GGF A;  2XF2 A;  1F4J A;  4ENT A;  3EJ6 A;  1GGJ A;  3PQ5 A;  1MQF A;  4QOR A;  3P9R A;  1QWS A;  1HBZ A;  2J2M A;  4ENV A;  2A9E A;  2ISA A;  4QON A;  2CAG A;  1GGH A;  3TTX A;  1U5U A;  3TTT A;  3ZJ5 A;  3HB6 A;  3P9Q A;  4QOM A;  4ENW A;  1E93 A;  2XQ1 A;  4ENS A;  1QF7 A;  2IUF A;  1SI8 A;  4BIM A;  4ENP A;  4AUN A;  4AUM A; 
#chains in the Genus database with same CATH topology
 3J7B A;  1GWF A;  1GGE A;  4B31 A;  1GWE A;  4B5K A;  1TH3 A;  4CAB A;  4E37 A;  1P80 A;  1NM0 A;  1TGU A;  4B40 A;  1IPH A;  3PQ6 A;  4AUL A;  4AJ9 A;  3TTW A;  1GGK A;  4QOO A;  1QQW A;  4AUE A;  1H6N A;  3PQ8 A;  1QWM A;  3TTV A;  3PQ3 A;  2IQF A;  3E4W A;  1QWL A;  4QOP A;  3ZJ4 A;  1SY7 A;  3TTU A;  4B7A A;  4ENQ A;  1CF9 A;  1GG9 A;  4ENU A;  1P7Z A;  4B2Y A;  4B7G A;  5BV2 P;  3PQ2 A;  3RE8 A;  7CAT A;  3P9P A;  1P81 A;  4BLC A;  1GWH A;  4QOL A;  3VU3 A;  1DGH A;  4B7F A;  1A4E A;  1M85 A;  2CAH A;  3P9S A;  3DY5 A;  1P7Y A;  1H7K A;  3E4Y A;  4QOQ A;  3PQ4 A;  1M7S A;  4BFL A;  4ENR A;  3PQ7 A;  1GGF A;  2XF2 A;  1DGB A;  1F4J A;  5GKN A;  4ENT A;  1TH2 A;  3EJ6 A;  1GGJ A;  3PQ5 A;  1MQF A;  1DGH B;  4QOR A;  1DGF A;  3P9R A;  1QWS A;  1HBZ A;  2J2M A;  1TH4 A;  4ENV A;  2A9E A;  2ISA A;  4QON A;  2CAG A;  1GGH A;  8CAT A;  3TTX A;  3RGS A;  1U5U A;  3TTT A;  4B7H A;  3ZJ5 A;  3HB6 A;  3P9Q A;  4QOM A;  4ENW A;  1E93 A;  2XQ1 A;  3RGP A;  3NWL A;  4ENS A;  1QF7 A;  2IUF A;  1SI8 A;  4BIM A;  4ENP A;  1DGG A;  4AUN A;  4AUM A; 
#chains in the Genus database with same CATH homology
 1GWF A;  1GGE A;  4B31 A;  1GWE A;  4B5K A;  4CAB A;  4E37 A;  1P80 A;  1NM0 A;  4B40 A;  1IPH A;  3PQ6 A;  4AUL A;  4AJ9 A;  3TTW A;  1GGK A;  4QOO A;  4AUE A;  1H6N A;  3PQ8 A;  1QWM A;  3TTV A;  3PQ3 A;  2IQF A;  1QWL A;  4QOP A;  3ZJ4 A;  1SY7 A;  3TTU A;  4B7A A;  4ENQ A;  1CF9 A;  1GG9 A;  4ENU A;  1P7Z A;  4B2Y A;  5BV2 P;  3PQ2 A;  3P9P A;  1P81 A;  1GWH A;  4QOL A;  3VU3 A;  1A4E A;  1M85 A;  2CAH A;  3P9S A;  3DY5 A;  1P7Y A;  1H7K A;  4QOQ A;  3PQ4 A;  1M7S A;  4BFL A;  4ENR A;  3PQ7 A;  1GGF A;  2XF2 A;  1F4J A;  4ENT A;  3EJ6 A;  1GGJ A;  3PQ5 A;  1MQF A;  4QOR A;  3P9R A;  1QWS A;  1HBZ A;  2J2M A;  4ENV A;  2A9E A;  2ISA A;  4QON A;  2CAG A;  1GGH A;  3TTX A;  1U5U A;  3TTT A;  3ZJ5 A;  3HB6 A;  3P9Q A;  4QOM A;  4ENW A;  1E93 A;  2XQ1 A;  4ENS A;  1QF7 A;  2IUF A;  1SI8 A;  4BIM A;  4ENP A;  4AUN A;  4AUM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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