1HCNA

Structure of human chorionic gonadotropin at 2.6 angstroms resolution from mad analysis of the selenomethionyl protein
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
85
structure length
85
Chain Sequence
QDCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone
molecule keywords HUMAN CHORIONIC GONADOTROPIN
publication title Structure of human chorionic gonadotropin at 2.6 A resolution from MAD analysis of the selenomethionyl protein.
pubmed doi rcsb
source organism Homo sapiens
total genus 10
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 1994-07-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1hcnA00
1BNDB 4EDXV 2QJBA 4EAXA 5BQ8B 2FJHV 2QCQA 4FAOA 4UI2B 1JPYA 1REWA 1HCNA 1E9JA 5E4GA 2QJ9A 5FV1V 1DZ7A 4QCIC 5BQCA 1PDGA 4HSAA 5BQEA 1QTYR 1AGQA 2H62A 4WPBA 3V6BA 2QR0C 5BQBA 4KXZA 3P9WA 2X1WA 2VXSA 5HK5E 1TGJA 2GOOA 2R52A 1RV6V 1BNDA 5F3BC 1NYUB 2PJYA 5BPUA 1WWWV 5BQ8A 2R53A 1ES7A 1BJ1V 3BMPA 5HK5A 5HI3A 1SGFB 1KLAA 2V5EB 3QB4A 3MJGA 2ARPA 2X1XE 4EFVA 1MJVA 1LXIA 1TGKA 4EC7A 1NYSB 1HRPA 2XACA 1FLTV 2VPFA 3EVSB 1B8MB 4XPJA 5F3HI 4AY9B 2XV7A 2VWEA 3BDYV 1FZVA 1MKKA 1HRPB 1AOCA 4QHUC 2H64A 5BQ8D 5JZ7A 1TZHV 3E07A 3QTKA 1HD4A 1B8KA 2C7WA 1CZ8V 4LXSJ 1SG1A 2GNNA 1VPFA 2GYRA 4MIDA 1KTZA 1B8MA 4UI0A 3FUBB 4AY9A 5HHXA 2P6AA 1VPPV 4N1DA 2GH0C 2KD3A 4MQWB 3S1KV 4GLSE 4ZFFC 3SEKB 4EDWV 4HQXA 1ZKZA 1TFGA 4UI1A 4X1JA 2QCWA 5HHCA 3B4VA 2ARVA 1WQ9B 1S4YB 5HI5A 4HQUA 2BHKA 4YCIC 1BTGA 1BETA 3BK3A 4UHZA 1QFWA 2TGIA 5AEJA 1XWDB 3EO1C 5HHDA 4MQWA 3RJRA 2ASKA 1MKGA 1M4UL 4GLNE 3MJKA 4KV5A 5FV2V 1REUA 1B98A 4LXRJ 3S1BV 4HR9A 3HH2A 1FL7A 1QFWB 1WQ9A 2B0UA 2IFGE 3BUKA 3IJ2A 4MPLA 4UHYA 1WQ8A 5HHVA 3V2AA 3KFDA 4QAFC 3JVFA 1HCNB 1HCFA 2FJGV 1M4UA 4BV4L 1XWDA 1KATW 5BQEB 1FL7B 5HI4A 2QJAA 1NT3A 1LX5A 1KLCA 4KZNA 4YCGC 2GYZA 1BMPA 4ZBNA 1WAQA 1TZIV
chains in the Genus database with same CATH superfamily
1BNDB 4EDXV 2QJBA 4EAXA 5BQ8B 2FJHV 2QCQA 4FAOA 4UI2B 1JPYA 1REWA 1HCNA 1E9JA 5E4GA 2QJ9A 5FV1V 1DZ7A 4QCIC 5BQCA 1PDGA 4HSAA 5BQEA 1QTYR 1AGQA 2H62A 4WPBA 3V6BA 2QR0C 5BQBA 4KXZA 3P9WA 2X1WA 2VXSA 5HK5E 1TGJA 2GOOA 2R52A 1RV6V 1BNDA 5F3BC 1NYUB 2PJYA 5BPUA 1WWWV 5BQ8A 2R53A 1ES7A 1BJ1V 3BMPA 5HK5A 5HI3A 1SGFB 1KLAA 2V5EB 3QB4A 3MJGA 2ARPA 2X1XE 4EFVA 1MJVA 1LXIA 1TGKA 4EC7A 1NYSB 1HRPA 2XACA 1FLTV 2VPFA 3EVSB 1B8MB 4XPJA 5F3HI 4AY9B 2XV7A 2VWEA 3BDYV 1FZVA 1MKKA 1HRPB 1AOCA 4QHUC 2H64A 5BQ8D 5JZ7A 1TZHV 3E07A 3QTKA 1HD4A 1B8KA 2C7WA 1CZ8V 4LXSJ 1SG1A 2GNNA 1VPFA 2GYRA 4MIDA 1KTZA 1B8MA 4UI0A 3FUBB 4AY9A 5HHXA 2P6AA 1VPPV 4N1DA 2GH0C 2KD3A 4MQWB 3S1KV 4GLSE 4ZFFC 3SEKB 4EDWV 4HQXA 1ZKZA 1TFGA 4UI1A 4X1JA 2QCWA 5HHCA 3B4VA 2ARVA 1WQ9B 1S4YB 5HI5A 4HQUA 2BHKA 4YCIC 1BTGA 1BETA 3BK3A 4UHZA 1QFWA 2TGIA 5AEJA 1XWDB 3EO1C 5HHDA 4MQWA 3RJRA 2ASKA 1MKGA 1M4UL 4GLNE 3MJKA 4KV5A 5FV2V 1REUA 1B98A 4LXRJ 3S1BV 4HR9A 3HH2A 1FL7A 1QFWB 1WQ9A 2B0UA 2IFGE 3BUKA 3IJ2A 4MPLA 4UHYA 1WQ8A 5HHVA 3V2AA 3KFDA 4QAFC 3JVFA 1HCNB 1HCFA 2FJGV 1M4UA 4BV4L 1XWDA 1KATW 5BQEB 1FL7B 5HI4A 2QJAA 1NT3A 1LX5A 1KLCA 4KZNA 4YCGC 2GYZA 1BMPA 4ZBNA 1WAQA 1TZIV
chains in the Genus database with same CATH topology
1BNDB 4EDXV 2QJBA 4EAXA 5BQ8B 2FJHV 2QCQA 4FAOA 4UI2B 1JPYA 1REWA 1HCNA 1E9JA 5E4GA 2QJ9A 5FV1V 1DZ7A 4QCIC 5BQCA 1PDGA 4HSAA 5BQEA 1QTYR 1AGQA 2H62A 4WPBA 3V6BA 2QR0C 5BQBA 4KXZA 3P9WA 2X1WA 2VXSA 5HK5E 1TGJA 2GOOA 2R52A 1RV6V 1BNDA 5F3BC 1NYUB 2PJYA 5BPUA 1WWWV 5BQ8A 2R53A 1ES7A 1BJ1V 3BMPA 5HK5A 5HI3A 1SGFB 1KLAA 2V5EB 3QB4A 3MJGA 2ARPA 2X1XE 4EFVA 1MJVA 1LXIA 1TGKA 4EC7A 1NYSB 1HRPA 2XACA 1FLTV 2VPFA 3EVSB 1B8MB 4XPJA 5F3HI 4AY9B 2XV7A 2VWEA 3BDYV 1FZVA 1MKKA 1HRPB 1AOCA 4QHUC 2H64A 5BQ8D 5JZ7A 1TZHV 3E07A 3QTKA 1HD4A 1B8KA 2C7WA 1CZ8V 4LXSJ 1SG1A 2GNNA 1VPFA 2GYRA 4MIDA 1KTZA 1B8MA 4UI0A 3FUBB 4AY9A 5HHXA 2P6AA 1VPPV 4N1DA 2GH0C 2KD3A 4MQWB 3S1KV 4GLSE 4ZFFC 3SEKB 4EDWV 4HQXA 1ZKZA 1TFGA 4UI1A 4X1JA 2QCWA 5HHCA 3B4VA 2ARVA 1WQ9B 1S4YB 5HI5A 4HQUA 2BHKA 4YCIC 1BTGA 1BETA 3BK3A 4UHZA 1QFWA 2TGIA 5AEJA 1XWDB 3EO1C 5HHDA 4MQWA 3RJRA 2ASKA 1MKGA 1M4UL 4GLNE 3MJKA 4KV5A 5FV2V 1REUA 1B98A 4LXRJ 3S1BV 4HR9A 3HH2A 1FL7A 1QFWB 1WQ9A 2B0UA 2IFGE 3BUKA 3IJ2A 4MPLA 4UHYA 1WQ8A 5HHVA 3V2AA 3KFDA 4QAFC 3JVFA 1HCNB 1HCFA 2FJGV 1M4UA 4BV4L 1XWDA 1KATW 5BQEB 1FL7B 5HI4A 2QJAA 1NT3A 1LX5A 1KLCA 4KZNA 4YCGC 2GYZA 1BMPA 4ZBNA 1WAQA 1TZIV
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BND B;  4EDX V;  2QJB A;  4EAX A;  5BQ8 B;  2FJH V;  2QCQ A;  4FAO A;  4UI2 B;  1JPY A;  1REW A;  1HCN A;  1E9J A;  5E4G A;  2QJ9 A;  5FV1 V;  1DZ7 A;  4QCI C;  5BQC A;  1PDG A;  4HSA A;  5BQE A;  1QTY R;  1AGQ A;  2H62 A;  4WPB A;  3V6B A;  2QR0 C;  5BQB A;  4KXZ A;  3P9W A;  2X1W A;  2VXS A;  5HK5 E;  1TGJ A;  2GOO A;  2R52 A;  1RV6 V;  1BND A;  5F3B C;  1NYU B;  2PJY A;  5BPU A;  1WWW V;  5BQ8 A;  2R53 A;  1ES7 A;  1BJ1 V;  3BMP A;  5HK5 A;  5HI3 A;  1SGF B;  1KLA A;  2V5E B;  3QB4 A;  3MJG A;  2ARP A;  2X1X E;  4EFV A;  1MJV A;  1LXI A;  1TGK A;  4EC7 A;  1NYS B;  1HRP A;  2XAC A;  1FLT V;  2VPF A;  3EVS B;  1B8M B;  4XPJ A;  5F3H I;  4AY9 B;  2XV7 A;  2VWE A;  3BDY V;  1FZV A;  1MKK A;  1HRP B;  1AOC A;  4QHU C;  2H64 A;  5BQ8 D;  5JZ7 A;  1TZH V;  3E07 A;  3QTK A;  1HD4 A;  1B8K A;  2C7W A;  1CZ8 V;  4LXS J;  1SG1 A;  2GNN A;  1VPF A;  2GYR A;  4MID A;  1KTZ A;  1B8M A;  4UI0 A;  3FUB B;  4AY9 A;  5HHX A;  2P6A A;  1VPP V;  4N1D A;  2GH0 C;  2KD3 A;  4MQW B;  3S1K V;  4GLS E;  4ZFF C;  3SEK B;  4EDW V;  4HQX A;  1ZKZ A;  1TFG A;  4UI1 A;  4X1J A;  2QCW A;  5HHC A;  3B4V A;  2ARV A;  1WQ9 B;  1S4Y B;  5HI5 A;  4HQU A;  2BHK A;  4YCI C;  1BTG A;  1BET A;  3BK3 A;  4UHZ A;  1QFW A;  2TGI A;  5AEJ A;  1XWD B;  3EO1 C;  5HHD A;  4MQW A;  3RJR A;  2ASK A;  1MKG A;  1M4U L;  4GLN E;  3MJK A;  4KV5 A;  5FV2 V;  1REU A;  1B98 A;  4LXR J;  3S1B V;  4HR9 A;  3HH2 A;  1FL7 A;  1QFW B;  1WQ9 A;  2B0U A;  2IFG E;  3BUK A;  3IJ2 A;  4MPL A;  4UHY A;  1WQ8 A;  5HHV A;  3V2A A;  3KFD A;  4QAF C;  3JVF A;  1HCN B;  1HCF A;  2FJG V;  1M4U A;  4BV4 L;  1XWD A;  1KAT W;  5BQE B;  1FL7 B;  5HI4 A;  2QJA A;  1NT3 A;  1LX5 A;  1KLC A;  4KZN A;  4YCG C;  2GYZ A;  1BMP A;  4ZBN A;  1WAQ A;  1TZI V; 
#chains in the Genus database with same CATH topology
 1BND B;  4EDX V;  2QJB A;  4EAX A;  5BQ8 B;  2FJH V;  2QCQ A;  4FAO A;  4UI2 B;  1JPY A;  1REW A;  1HCN A;  1E9J A;  5E4G A;  2QJ9 A;  5FV1 V;  1DZ7 A;  4QCI C;  5BQC A;  1PDG A;  4HSA A;  5BQE A;  1QTY R;  1AGQ A;  2H62 A;  4WPB A;  3V6B A;  2QR0 C;  5BQB A;  4KXZ A;  3P9W A;  2X1W A;  2VXS A;  5HK5 E;  1TGJ A;  2GOO A;  2R52 A;  1RV6 V;  1BND A;  5F3B C;  1NYU B;  2PJY A;  5BPU A;  1WWW V;  5BQ8 A;  2R53 A;  1ES7 A;  1BJ1 V;  3BMP A;  5HK5 A;  5HI3 A;  1SGF B;  1KLA A;  2V5E B;  3QB4 A;  3MJG A;  2ARP A;  2X1X E;  4EFV A;  1MJV A;  1LXI A;  1TGK A;  4EC7 A;  1NYS B;  1HRP A;  2XAC A;  1FLT V;  2VPF A;  3EVS B;  1B8M B;  4XPJ A;  5F3H I;  4AY9 B;  2XV7 A;  2VWE A;  3BDY V;  1FZV A;  1MKK A;  1HRP B;  1AOC A;  4QHU C;  2H64 A;  5BQ8 D;  5JZ7 A;  1TZH V;  3E07 A;  3QTK A;  1HD4 A;  1B8K A;  2C7W A;  1CZ8 V;  4LXS J;  1SG1 A;  2GNN A;  1VPF A;  2GYR A;  4MID A;  1KTZ A;  1B8M A;  4UI0 A;  3FUB B;  4AY9 A;  5HHX A;  2P6A A;  1VPP V;  4N1D A;  2GH0 C;  2KD3 A;  4MQW B;  3S1K V;  4GLS E;  4ZFF C;  3SEK B;  4EDW V;  4HQX A;  1ZKZ A;  1TFG A;  4UI1 A;  4X1J A;  2QCW A;  5HHC A;  3B4V A;  2ARV A;  1WQ9 B;  1S4Y B;  5HI5 A;  4HQU A;  2BHK A;  4YCI C;  1BTG A;  1BET A;  3BK3 A;  4UHZ A;  1QFW A;  2TGI A;  5AEJ A;  1XWD B;  3EO1 C;  5HHD A;  4MQW A;  3RJR A;  2ASK A;  1MKG A;  1M4U L;  4GLN E;  3MJK A;  4KV5 A;  5FV2 V;  1REU A;  1B98 A;  4LXR J;  3S1B V;  4HR9 A;  3HH2 A;  1FL7 A;  1QFW B;  1WQ9 A;  2B0U A;  2IFG E;  3BUK A;  3IJ2 A;  4MPL A;  4UHY A;  1WQ8 A;  5HHV A;  3V2A A;  3KFD A;  4QAF C;  3JVF A;  1HCN B;  1HCF A;  2FJG V;  1M4U A;  4BV4 L;  1XWD A;  1KAT W;  5BQE B;  1FL7 B;  5HI4 A;  2QJA A;  1NT3 A;  1LX5 A;  1KLC A;  4KZN A;  4YCG C;  2GYZ A;  1BMP A;  4ZBN A;  1WAQ A;  1TZI V; 
#chains in the Genus database with same CATH homology
 1BND B;  4EDX V;  2QJB A;  4EAX A;  5BQ8 B;  2FJH V;  2QCQ A;  4FAO A;  4UI2 B;  1JPY A;  1REW A;  1HCN A;  1E9J A;  5E4G A;  2QJ9 A;  5FV1 V;  1DZ7 A;  4QCI C;  5BQC A;  1PDG A;  4HSA A;  5BQE A;  1QTY R;  1AGQ A;  2H62 A;  4WPB A;  3V6B A;  2QR0 C;  5BQB A;  4KXZ A;  3P9W A;  2X1W A;  2VXS A;  5HK5 E;  1TGJ A;  2GOO A;  2R52 A;  1RV6 V;  1BND A;  5F3B C;  1NYU B;  2PJY A;  5BPU A;  1WWW V;  5BQ8 A;  2R53 A;  1ES7 A;  1BJ1 V;  3BMP A;  5HK5 A;  5HI3 A;  1SGF B;  1KLA A;  2V5E B;  3QB4 A;  3MJG A;  2ARP A;  2X1X E;  4EFV A;  1MJV A;  1LXI A;  1TGK A;  4EC7 A;  1NYS B;  1HRP A;  2XAC A;  1FLT V;  2VPF A;  3EVS B;  1B8M B;  4XPJ A;  5F3H I;  4AY9 B;  2XV7 A;  2VWE A;  3BDY V;  1FZV A;  1MKK A;  1HRP B;  1AOC A;  4QHU C;  2H64 A;  5BQ8 D;  5JZ7 A;  1TZH V;  3E07 A;  3QTK A;  1HD4 A;  1B8K A;  2C7W A;  1CZ8 V;  4LXS J;  1SG1 A;  2GNN A;  1VPF A;  2GYR A;  4MID A;  1KTZ A;  1B8M A;  4UI0 A;  3FUB B;  4AY9 A;  5HHX A;  2P6A A;  1VPP V;  4N1D A;  2GH0 C;  2KD3 A;  4MQW B;  3S1K V;  4GLS E;  4ZFF C;  3SEK B;  4EDW V;  4HQX A;  1ZKZ A;  1TFG A;  4UI1 A;  4X1J A;  2QCW A;  5HHC A;  3B4V A;  2ARV A;  1WQ9 B;  1S4Y B;  5HI5 A;  4HQU A;  2BHK A;  4YCI C;  1BTG A;  1BET A;  3BK3 A;  4UHZ A;  1QFW A;  2TGI A;  5AEJ A;  1XWD B;  3EO1 C;  5HHD A;  4MQW A;  3RJR A;  2ASK A;  1MKG A;  1M4U L;  4GLN E;  3MJK A;  4KV5 A;  5FV2 V;  1REU A;  1B98 A;  4LXR J;  3S1B V;  4HR9 A;  3HH2 A;  1FL7 A;  1QFW B;  1WQ9 A;  2B0U A;  2IFG E;  3BUK A;  3IJ2 A;  4MPL A;  4UHY A;  1WQ8 A;  5HHV A;  3V2A A;  3KFD A;  4QAF C;  3JVF A;  1HCN B;  1HCF A;  2FJG V;  1M4U A;  4BV4 L;  1XWD A;  1KAT W;  5BQE B;  1FL7 B;  5HI4 A;  2QJA A;  1NT3 A;  1LX5 A;  1KLC A;  4KZN A;  4YCG C;  2GYZ A;  1BMP A;  4ZBN A;  1WAQ A;  1TZI V; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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