1HH1A

The structure of hjc, a holliday junction resolving enzyme from sulfolobus solfataricus
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
132
structure length
125
Chain Sequence
SAVERNIVSRLRDKGFAVVRAPAPIPDIIALKNGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSLFLGVKKPGVLKFIPFEKLRRTETGNYVADSEIEGLDLEDLVRLVEAKISRTLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Holliday junction resolvase
molecule keywords HOLLIDAY JUNCTION RESOLVING ENZYME HJC
publication title Structure of Hjc, a Holliday Junction Resolvase, from Sulfolobus Solfataricus
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 37
structure length 125
sequence length 132
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2000-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 1hh1A00
3DNXA 1OB8A 2OKFA 1T0FA 1Y1OA 1R11A 4QBOA 2CV8A 3P1ZB 3P1ZA 1ZP7A 3AJVB 3AJVA 1XMXA 4QBLA 1R0VA 2WJ0A 2FCOA 3FOVA 2GW6A 2WCWA 4TKDA 1IPIA 2ZYZB 2EO0A 2WIWA 1F1ZA 2ZYZA 2GJWA 2WCZA 4TKKA 1RLVA 2OSTA 1GEFA 1A79A 2INBA 5FDKA 1HH1A 2WIZA 1RZNA 2VLDA 3IEYA 4QBNA 1Y88A 1OB9A 3P1YA
chains in the Genus database with same CATH superfamily
3DNXA 1OB8A 4ZQUA 4EV1A 2OKFA 1T0FA 1Y1OA 2JJQA 4G6UA 1R11A 2DBSA 4QBOA 2CV8A 3P1ZB 3P1ZA 2FLCA 1ZP7A 3AJVB 3AJVA 4DAPA 1XMXA 4QBLA 4E6ZA 3BT7A 2Z0RA 1R0VA 2WJ0A 2FCOA 2W8MA 3FOVA 2GW6A 2WCWA 4TKDA 1IPIA 2VS1A 2IXSA 2ZYZB 2EO0A 2BH2A 2FKHB 2WIWA 1F1ZA 2ZYZA 2GJWA 2WCZA 4TKKA 1RLVA 2OSTA 4G6VA 4LQEA 1GEFA 1UWVA 1A79A 2INBA 3IF0X 1HH1A 4DA2A 5FDKA 2FKCA 2WIZA 1RZNA 2VLDA 3IEYB 3IEYA 4QBNA 4DAVA 2FL3A 1Y88A 1OB9A 1YNMA 3P1YA 2CZRA
chains in the Genus database with same CATH topology
3DNXA 1OB8A 4ZQUA 4EV1A 2OKFA 1T0FA 1Y1OA 2JJQA 4G6UA 1R11A 2DBSA 4QBOA 2CV8A 3P1ZB 3P1ZA 2FLCA 1ZP7A 3AJVB 3AJVA 4DAPA 1XMXA 4QBLA 4E6ZA 3BT7A 2Z0RA 1R0VA 2WJ0A 2FCOA 2W8MA 3FOVA 2GW6A 2WCWA 4TKDA 1IPIA 2VS1A 2IXSA 2ZYZB 2EO0A 2BH2A 2FKHB 2WIWA 1F1ZA 2ZYZA 2GJWA 2WCZA 4TKKA 1RLVA 2OSTA 4G6VA 4LQEA 1GEFA 1UWVA 1A79A 2INBA 3IF0X 1HH1A 4DA2A 5FDKA 2FKCA 2WIZA 1RZNA 2VLDA 3IEYB 3IEYA 4QBNA 4DAVA 2FL3A 1Y88A 1OB9A 1YNMA 3P1YA 2CZRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DNX A;  1OB8 A;  2OKF A;  1T0F A;  1Y1O A;  1R11 A;  4QBO A;  2CV8 A;  3P1Z B;  3P1Z A;  1ZP7 A;  3AJV B;  3AJV A;  1XMX A;  4QBL A;  1R0V A;  2WJ0 A;  2FCO A;  3FOV A;  2GW6 A;  2WCW A;  4TKD A;  1IPI A;  2ZYZ B;  2EO0 A;  2WIW A;  1F1Z A;  2ZYZ A;  2GJW A;  2WCZ A;  4TKK A;  1RLV A;  2OST A;  1GEF A;  1A79 A;  2INB A;  5FDK A;  1HH1 A;  2WIZ A;  1RZN A;  2VLD A;  3IEY A;  4QBN A;  1Y88 A;  1OB9 A;  3P1Y A; 
#chains in the Genus database with same CATH topology
 3DNX A;  1OB8 A;  4ZQU A;  4EV1 A;  2OKF A;  1T0F A;  1Y1O A;  2JJQ A;  4G6U A;  1R11 A;  2DBS A;  4QBO A;  2CV8 A;  3P1Z B;  3P1Z A;  2FLC A;  1ZP7 A;  3AJV B;  3AJV A;  4DAP A;  1XMX A;  4QBL A;  4E6Z A;  3BT7 A;  2Z0R A;  1R0V A;  2WJ0 A;  2FCO A;  2W8M A;  3FOV A;  2GW6 A;  2WCW A;  4TKD A;  1IPI A;  2VS1 A;  2IXS A;  2ZYZ B;  2EO0 A;  2BH2 A;  2FKH B;  2WIW A;  1F1Z A;  2ZYZ A;  2GJW A;  2WCZ A;  4TKK A;  1RLV A;  2OST A;  4G6V A;  4LQE A;  1GEF A;  1UWV A;  1A79 A;  2INB A;  3IF0 X;  1HH1 A;  4DA2 A;  5FDK A;  2FKC A;  2WIZ A;  1RZN A;  2VLD A;  3IEY B;  3IEY A;  4QBN A;  4DAV A;  2FL3 A;  1Y88 A;  1OB9 A;  1YNM A;  3P1Y A;  2CZR A; 
#chains in the Genus database with same CATH homology
 3DNX A;  1OB8 A;  4ZQU A;  4EV1 A;  2OKF A;  1T0F A;  1Y1O A;  2JJQ A;  4G6U A;  1R11 A;  2DBS A;  4QBO A;  2CV8 A;  3P1Z B;  3P1Z A;  2FLC A;  1ZP7 A;  3AJV B;  3AJV A;  4DAP A;  1XMX A;  4QBL A;  4E6Z A;  3BT7 A;  2Z0R A;  1R0V A;  2WJ0 A;  2FCO A;  2W8M A;  3FOV A;  2GW6 A;  2WCW A;  4TKD A;  1IPI A;  2VS1 A;  2IXS A;  2ZYZ B;  2EO0 A;  2BH2 A;  2FKH B;  2WIW A;  1F1Z A;  2ZYZ A;  2GJW A;  2WCZ A;  4TKK A;  1RLV A;  2OST A;  4G6V A;  4LQE A;  1GEF A;  1UWV A;  1A79 A;  2INB A;  3IF0 X;  1HH1 A;  4DA2 A;  5FDK A;  2FKC A;  2WIZ A;  1RZN A;  2VLD A;  3IEY B;  3IEY A;  4QBN A;  4DAV A;  2FL3 A;  1Y88 A;  1OB9 A;  1YNM A;  3P1Y A;  2CZR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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