1HK0X

Human gammad crystallin structure at 1.25 a resolution
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
173
structure length
173
Chain Sequence
GKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCWMLYEQPNYSGLQYFLRRGDYADHQQWMGLSDSVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEIHSLNVLEGSWVLYELSNYRGRQYLLMPGDYRRYQDWGATNARVGSLRRVIDFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Eye lens protein
molecule keywords Gamma-crystallin D
publication title High-Resolution X-Ray Crystal Structures of Human Gammad Crystallin (1.25A) and the R58H Mutant (1.15A) Associated with Aculeiform Cataract
pubmed doi rcsb
source organism Homo sapiens
total genus 44
structure length 173
sequence length 173
ec nomenclature
pdb deposition date 2003-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1hk0X02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1hk0X01
2JDFA 3ENUA 1NPSA 1YTQA 1GCSA 2K1XA 1OKIA 4PSRA 4JGFA 1DSLA 2KFBA 2K1WA 1AMMA 4W9AA 1A5DA 5HT8A 1PRRA 4W9BA 1ZGTA 1H4AX 5HT9A 1ZIQA 2A5MA 1ZWOA 2BV2A 2M3UA 1A45A 1BD7A 1GAMA 2B1OA 4FD9A 2KP5A 3I9HA 2NBRA 1ZWMA 4GCRA 1M8UA 1ZIEA 1HA4A 1ZIRA 3SO0A 1BLBA 4GR7A 1YHPA 3ENTA 3HZ2A 2V2UA 2BB2A 3SNZA 1I5IA 4NI3A 1E7NA 1AG4A 3QK3A 2M3CA 2M3TA 4IAUA 1PRSA 4AKAA 4EL6A 1A7HA 3CW3A 1HK0X 3LWKA 3SO1A 1HDFA 2G98A 3IAJA 2JDGA 3SNYA 1ELPA 3HZBA 4PSPA 2DADA
chains in the Genus database with same CATH superfamily
2JDFA 4W9AA 4GR7A 1ZWOA 4FD9A 2NBRA 4GCRA 1ZIEA 1HA4A 1YHPA 3HZ2A 2V2UA 2BB2A 1I5IA 1E7NA 1AG4A 4IAUA 4AKAA 1HK0X 1HDFA 3SNYA 1ELPA 2G98A 1YTQA 2K1XA 1DSLA 1C01A 4W9BA 1H4AX 2M3UA 1GAMA 2B1OA 1ZWMA 1WKTA 3SNZA 4NI3A 4EL6A 3QK3A 3CW3A 1F53A 4PSPA 5HT9A 3ENUA 1NPSA 1GCSA 1OKIA 2KFBA 1A5DA 1ZGTA 1ZIQA 2A5MA 2BV2A 3I9HA 1ZIRA 3ENTA 2M3CA 1PRSA 3UJZA 2JDGA 3HZBA 4PSRA 4JGFA 2K1WA 1AMMA 5HT8A 1PRRA 1G6EA 1A45A 1BD7A 2KP5A 1GH5A 1M8UA 3SO0A 1BLBA 2M3TA 1A7HA 3LWKA 3SO1A 3IAJA 1BHUA 2DADA
chains in the Genus database with same CATH topology
2JDFA 3ENUA 1NPSA 1YTQA 1GCSA 2K1XA 1OKIA 4PSRA 4JGFA 1DSLA 2KFBA 2K1WA 1AMMA 4W9AA 1A5DA 5HT8A 1PRRA 4W9BA 1ZGTA 1H4AX 5HT9A 1ZIQA 2A5MA 1ZWOA 2BV2A 2M3UA 1A45A 1BD7A 1GAMA 2B1OA 4FD9A 2KP5A 3I9HA 2NBRA 1ZWMA 4GCRA 1M8UA 1ZIEA 1HA4A 1ZIRA 3SO0A 1BLBA 4GR7A 1YHPA 3ENTA 3HZ2A 2V2UA 2BB2A 3SNZA 1I5IA 4NI3A 1E7NA 1AG4A 3QK3A 2M3CA 2M3TA 4IAUA 1PRSA 4AKAA 4EL6A 1A7HA 3CW3A 1HK0X 3LWKA 3SO1A 1HDFA 2G98A 3IAJA 2JDGA 3SNYA 1ELPA 3HZBA 4PSPA 2DADA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JDF A;  3ENU A;  1NPS A;  1YTQ A;  1GCS A;  2K1X A;  1OKI A;  4PSR A;  4JGF A;  1DSL A;  2KFB A;  2K1W A;  1AMM A;  4W9A A;  1A5D A;  5HT8 A;  1PRR A;  4W9B A;  1ZGT A;  1H4A X;  5HT9 A;  1ZIQ A;  2A5M A;  1ZWO A;  2BV2 A;  2M3U A;  1A45 A;  1BD7 A;  1GAM A;  2B1O A;  4FD9 A;  2KP5 A;  3I9H A;  2NBR A;  1ZWM A;  4GCR A;  1M8U A;  1ZIE A;  1HA4 A;  1ZIR A;  3SO0 A;  1BLB A;  4GR7 A;  1YHP A;  3ENT A;  3HZ2 A;  2V2U A;  2BB2 A;  3SNZ A;  1I5I A;  4NI3 A;  1E7N A;  1AG4 A;  3QK3 A;  2M3C A;  2M3T A;  4IAU A;  1PRS A;  4AKA A;  4EL6 A;  1A7H A;  3CW3 A;  1HK0 X;  3LWK A;  3SO1 A;  1HDF A;  2G98 A;  3IAJ A;  2JDG A;  3SNY A;  1ELP A;  3HZB A;  4PSP A;  2DAD A; 
#chains in the Genus database with same CATH topology
 2JDF A;  4W9A A;  4GR7 A;  1ZWO A;  4FD9 A;  2NBR A;  4GCR A;  1ZIE A;  1HA4 A;  1YHP A;  3HZ2 A;  2V2U A;  2BB2 A;  1I5I A;  1E7N A;  1AG4 A;  4IAU A;  4AKA A;  1HK0 X;  1HDF A;  3SNY A;  1ELP A;  2G98 A;  1YTQ A;  2K1X A;  1DSL A;  1C01 A;  4W9B A;  1H4A X;  2M3U A;  1GAM A;  2B1O A;  1ZWM A;  1WKT A;  3SNZ A;  4NI3 A;  4EL6 A;  3QK3 A;  3CW3 A;  1F53 A;  4PSP A;  5HT9 A;  3ENU A;  1NPS A;  1GCS A;  1OKI A;  2KFB A;  1A5D A;  1ZGT A;  1ZIQ A;  2A5M A;  2BV2 A;  3I9H A;  1ZIR A;  3ENT A;  2M3C A;  1PRS A;  3UJZ A;  2JDG A;  3HZB A;  4PSR A;  4JGF A;  2K1W A;  1AMM A;  5HT8 A;  1PRR A;  1G6E A;  1A45 A;  1BD7 A;  2KP5 A;  1GH5 A;  1M8U A;  3SO0 A;  1BLB A;  2M3T A;  1A7H A;  3LWK A;  3SO1 A;  3IAJ A;  1BHU A;  2DAD A; 
#chains in the Genus database with same CATH homology
 2JDF A;  3ENU A;  1NPS A;  1YTQ A;  1GCS A;  2K1X A;  1OKI A;  4PSR A;  4JGF A;  1DSL A;  2KFB A;  2K1W A;  1AMM A;  4W9A A;  1A5D A;  5HT8 A;  1PRR A;  4W9B A;  1ZGT A;  1H4A X;  5HT9 A;  1ZIQ A;  2A5M A;  1ZWO A;  2BV2 A;  2M3U A;  1A45 A;  1BD7 A;  1GAM A;  2B1O A;  4FD9 A;  2KP5 A;  3I9H A;  2NBR A;  1ZWM A;  4GCR A;  1M8U A;  1ZIE A;  1HA4 A;  1ZIR A;  3SO0 A;  1BLB A;  4GR7 A;  1YHP A;  3ENT A;  3HZ2 A;  2V2U A;  2BB2 A;  3SNZ A;  1I5I A;  4NI3 A;  1E7N A;  1AG4 A;  3QK3 A;  2M3C A;  2M3T A;  4IAU A;  1PRS A;  4AKA A;  4EL6 A;  1A7H A;  3CW3 A;  1HK0 X;  3LWK A;  3SO1 A;  1HDF A;  2G98 A;  3IAJ A;  2JDG A;  3SNY A;  1ELP A;  3HZB A;  4PSP A;  2DAD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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