1HKOA

Nmr structure of bovine cytochrome b5
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
104
structure length
104
Chain Sequence
AEESSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDRSKITKPSESIITTIDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME B5
publication title The Solution Structure of Bovine Ferricytochrome B5 Determined Using Heteronuclear NMR Methods.
pubmed doi rcsb
source organism Bos taurus
total genus 20
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2003-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1hkoA00
1LR6A 3X34A 1DO9A 2IBJA 2AXXA 1U9MA 1AWPA 1M20A 1KBIA 2I96A 1LJ0A 3X32A 1EUEA 1BLVA 1EHBA 3KS0A 3X33A 1LCOA 1M2IA 1LTDA 1J03A 3LF5A 1F04A 4B8NA 4X8YA 2OZ0A 1B5BA 1AQAA 1SOXA 3MUSA 1I5UA 4HINA 4HILA 1HKOA 1JEXA 1IEUA 1B5AA 2M33A 1U9UA 1IB7A 1CXYA 2I89A 1I87A 2KEOA 1MNYA 1IETA 1NX7A 1LDCA 1M2MA 1ICCA 1I8CA 1AW3A 1T0GA 1CYOA 1M59A 3X35A 1AXXA 1SH4A 1LQXA 1B5MA 1MJ4A 1J0QA 3OZZB 3NERA 1X3XA 1FCBA 1BFXA 1F03A 1ES1A
chains in the Genus database with same CATH superfamily
1LR6A 3X34A 1DO9A 2IBJA 2AXXA 1U9MA 1AWPA 1M20A 1KBIA 2I96A 1LJ0A 3X32A 1EUEA 1BLVA 1EHBA 3KS0A 3X33A 1LCOA 1M2IA 1LTDA 1J03A 3LF5A 1F04A 4B8NA 4X8YA 2OZ0A 1B5BA 1AQAA 1SOXA 3MUSA 1I5UA 4HINA 4HILA 1HKOA 1JEXA 1IEUA 1B5AA 2M33A 1U9UA 1IB7A 1CXYA 2I89A 1I87A 2KEOA 1MNYA 1IETA 1NX7A 1LDCA 1M2MA 1ICCA 1I8CA 1AW3A 1T0GA 1CYOA 1M59A 3X35A 1AXXA 1SH4A 1LQXA 1B5MA 1MJ4A 1J0QA 3OZZB 3NERA 1X3XA 1FCBA 1BFXA 1F03A 1ES1A
chains in the Genus database with same CATH topology
1LR6A 3X34A 1DO9A 2IBJA 2AXXA 1U9MA 1AWPA 1M20A 1KBIA 2I96A 1LJ0A 3X32A 1EUEA 1BLVA 1EHBA 3KS0A 3X33A 1LCOA 1M2IA 1LTDA 1J03A 3LF5A 1F04A 4B8NA 4X8YA 2OZ0A 1B5BA 1AQAA 1SOXA 3MUSA 1I5UA 4HINA 4HILA 1HKOA 1JEXA 1IEUA 1B5AA 2M33A 1U9UA 1IB7A 1CXYA 2I89A 1I87A 2KEOA 1MNYA 1IETA 1NX7A 1LDCA 1M2MA 1ICCA 1I8CA 1AW3A 1T0GA 1CYOA 1M59A 3X35A 1AXXA 1SH4A 1LQXA 1B5MA 1MJ4A 1J0QA 3OZZB 3NERA 1X3XA 1FCBA 1BFXA 1F03A 1ES1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LR6 A;  3X34 A;  1DO9 A;  2IBJ A;  2AXX A;  1U9M A;  1AWP A;  1M20 A;  1KBI A;  2I96 A;  1LJ0 A;  3X32 A;  1EUE A;  1BLV A;  1EHB A;  3KS0 A;  3X33 A;  1LCO A;  1M2I A;  1LTD A;  1J03 A;  3LF5 A;  1F04 A;  4B8N A;  4X8Y A;  2OZ0 A;  1B5B A;  1AQA A;  1SOX A;  3MUS A;  1I5U A;  4HIN A;  4HIL A;  1HKO A;  1JEX A;  1IEU A;  1B5A A;  2M33 A;  1U9U A;  1IB7 A;  1CXY A;  2I89 A;  1I87 A;  2KEO A;  1MNY A;  1IET A;  1NX7 A;  1LDC A;  1M2M A;  1ICC A;  1I8C A;  1AW3 A;  1T0G A;  1CYO A;  1M59 A;  3X35 A;  1AXX A;  1SH4 A;  1LQX A;  1B5M A;  1MJ4 A;  1J0Q A;  3OZZ B;  3NER A;  1X3X A;  1FCB A;  1BFX A;  1F03 A;  1ES1 A; 
#chains in the Genus database with same CATH topology
 1LR6 A;  3X34 A;  1DO9 A;  2IBJ A;  2AXX A;  1U9M A;  1AWP A;  1M20 A;  1KBI A;  2I96 A;  1LJ0 A;  3X32 A;  1EUE A;  1BLV A;  1EHB A;  3KS0 A;  3X33 A;  1LCO A;  1M2I A;  1LTD A;  1J03 A;  3LF5 A;  1F04 A;  4B8N A;  4X8Y A;  2OZ0 A;  1B5B A;  1AQA A;  1SOX A;  3MUS A;  1I5U A;  4HIN A;  4HIL A;  1HKO A;  1JEX A;  1IEU A;  1B5A A;  2M33 A;  1U9U A;  1IB7 A;  1CXY A;  2I89 A;  1I87 A;  2KEO A;  1MNY A;  1IET A;  1NX7 A;  1LDC A;  1M2M A;  1ICC A;  1I8C A;  1AW3 A;  1T0G A;  1CYO A;  1M59 A;  3X35 A;  1AXX A;  1SH4 A;  1LQX A;  1B5M A;  1MJ4 A;  1J0Q A;  3OZZ B;  3NER A;  1X3X A;  1FCB A;  1BFX A;  1F03 A;  1ES1 A; 
#chains in the Genus database with same CATH homology
 1LR6 A;  3X34 A;  1DO9 A;  2IBJ A;  2AXX A;  1U9M A;  1AWP A;  1M20 A;  1KBI A;  2I96 A;  1LJ0 A;  3X32 A;  1EUE A;  1BLV A;  1EHB A;  3KS0 A;  3X33 A;  1LCO A;  1M2I A;  1LTD A;  1J03 A;  3LF5 A;  1F04 A;  4B8N A;  4X8Y A;  2OZ0 A;  1B5B A;  1AQA A;  1SOX A;  3MUS A;  1I5U A;  4HIN A;  4HIL A;  1HKO A;  1JEX A;  1IEU A;  1B5A A;  2M33 A;  1U9U A;  1IB7 A;  1CXY A;  2I89 A;  1I87 A;  2KEO A;  1MNY A;  1IET A;  1NX7 A;  1LDC A;  1M2M A;  1ICC A;  1I8C A;  1AW3 A;  1T0G A;  1CYO A;  1M59 A;  3X35 A;  1AXX A;  1SH4 A;  1LQX A;  1B5M A;  1MJ4 A;  1J0Q A;  3OZZ B;  3NER A;  1X3X A;  1FCB A;  1BFX A;  1F03 A;  1ES1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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