1HMFA

Structure of the hmg box motif in the b-domain of hmg1
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
77
structure length
77
Chain Sequence
FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna-binding
molecule keywords HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
publication title Structure of the HMG box motif in the B-domain of HMG1.
pubmed rcsb
source organism Rattus norvegicus
total genus 19
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 1994-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00505 HMG_box HMG (high mobility group) box
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 1hmfA00
2D7LA 1J47A 4S2QD 1V63A 2LY4A 1LWMA 1J3DA 1WZ6A 1GT0D 2CO9A 2YQIA 1J5NA 1QRVA 2EQZA 2YULA 1HMFA 1J3XA 1HSMA 1NHNA 1O4XB 3FGHA 2LE4A 2E6OA 4EUWA 2HDZA 4QR9A 4NNUA 3NM9A 4Y60C 1WGFA 1HRYA 4NODA 1CG7A 1HSNA 1J46A 1V64A 3TMMA 1HRZA 1E7JA 2GZKA 2CTOA 2LEFA 1J3CA 2YRQA 2RTUA 1AABA 1L8YA 1NHMA 4A3NA 1WXLA 3U2BC 2CS1A 2CRJA 2LHJA 1HMEA 1CKTA 1L8ZA 2YUKA 1K99A 3F27D 1HMAA 1I11A 3TQ6A
chains in the Genus database with same CATH superfamily
2D7LA 1J47A 4S2QD 3AO0B 1V63A 2LY4A 1LWMA 1J3DA 1WZ6A 1GT0D 3ABSB 2CO9A 2YQIA 1J5NA 1QRVA 2EQZA 2YULA 3ABOB 3ABRB 1HMFA 1HSNA 1J3XA 1HSMA 1NHNA 1O4XB 1CG7A 3ANYB 3FGHA 2LE4A 2E6OA 4EUWA 2HDZA 4QR9A 4NNUA 3NM9A 2VSFA 1WGFA 4Y60C 5H8WA 1HRYA 4NODA 1J46A 1V64A 3TMMA 1HRZA 1E7JA 2GZKA 2CTOA 2LEFA 4KQEA 2YRQA 2RTUA 1AABA 1J3CA 1L8YA 1NHMA 4A3NA 1WXLA 3U2BC 2CS1A 2CRJA 2LHJA 1HMEA 1CKTA 1L8ZA 2YUKA 4A15A 1K99A 3F27D 1HMAA 1I11A 3TQ6A
chains in the Genus database with same CATH topology
2D7LA 1J47A 4S2QD 1V63A 2LY4A 1LWMA 1J3DA 1WZ6A 1GT0D 2CO9A 2YQIA 1J5NA 1QRVA 2EQZA 2YULA 1HMFA 1J3XA 1HSMA 1NHNA 1O4XB 3FGHA 2LE4A 2E6OA 4EUWA 2HDZA 4QR9A 4NNUA 3NM9A 4Y60C 1WGFA 1HRYA 4NODA 1CG7A 1HSNA 1J46A 1V64A 3TMMA 1HRZA 1E7JA 2GZKA 2CTOA 2LEFA 1J3CA 2YRQA 2RTUA 1AABA 1L8YA 1NHMA 4A3NA 1WXLA 3U2BC 2CS1A 2CRJA 2LHJA 1HMEA 1CKTA 1L8ZA 2YUKA 1K99A 3F27D 1HMAA 1I11A 3TQ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D7L A;  1J47 A;  4S2Q D;  1V63 A;  2LY4 A;  1LWM A;  1J3D A;  1WZ6 A;  1GT0 D;  2CO9 A;  2YQI A;  1J5N A;  1QRV A;  2EQZ A;  2YUL A;  1HMF A;  1J3X A;  1HSM A;  1NHN A;  1O4X B;  3FGH A;  2LE4 A;  2E6O A;  4EUW A;  2HDZ A;  4QR9 A;  4NNU A;  3NM9 A;  4Y60 C;  1WGF A;  1HRY A;  4NOD A;  1CG7 A;  1HSN A;  1J46 A;  1V64 A;  3TMM A;  1HRZ A;  1E7J A;  2GZK A;  2CTO A;  2LEF A;  1J3C A;  2YRQ A;  2RTU A;  1AAB A;  1L8Y A;  1NHM A;  4A3N A;  1WXL A;  3U2B C;  2CS1 A;  2CRJ A;  2LHJ A;  1HME A;  1CKT A;  1L8Z A;  2YUK A;  1K99 A;  3F27 D;  1HMA A;  1I11 A;  3TQ6 A; 
#chains in the Genus database with same CATH topology
 2D7L A;  1J47 A;  4S2Q D;  3AO0 B;  1V63 A;  2LY4 A;  1LWM A;  1J3D A;  1WZ6 A;  1GT0 D;  3ABS B;  2CO9 A;  2YQI A;  1J5N A;  1QRV A;  2EQZ A;  2YUL A;  3ABO B;  3ABR B;  1HMF A;  1HSN A;  1J3X A;  1HSM A;  1NHN A;  1O4X B;  1CG7 A;  3ANY B;  3FGH A;  2LE4 A;  2E6O A;  4EUW A;  2HDZ A;  4QR9 A;  4NNU A;  3NM9 A;  2VSF A;  1WGF A;  4Y60 C;  5H8W A;  1HRY A;  4NOD A;  1J46 A;  1V64 A;  3TMM A;  1HRZ A;  1E7J A;  2GZK A;  2CTO A;  2LEF A;  4KQE A;  2YRQ A;  2RTU A;  1AAB A;  1J3C A;  1L8Y A;  1NHM A;  4A3N A;  1WXL A;  3U2B C;  2CS1 A;  2CRJ A;  2LHJ A;  1HME A;  1CKT A;  1L8Z A;  2YUK A;  4A15 A;  1K99 A;  3F27 D;  1HMA A;  1I11 A;  3TQ6 A; 
#chains in the Genus database with same CATH homology
 2D7L A;  1J47 A;  4S2Q D;  1V63 A;  2LY4 A;  1LWM A;  1J3D A;  1WZ6 A;  1GT0 D;  2CO9 A;  2YQI A;  1J5N A;  1QRV A;  2EQZ A;  2YUL A;  1HMF A;  1J3X A;  1HSM A;  1NHN A;  1O4X B;  3FGH A;  2LE4 A;  2E6O A;  4EUW A;  2HDZ A;  4QR9 A;  4NNU A;  3NM9 A;  4Y60 C;  1WGF A;  1HRY A;  4NOD A;  1CG7 A;  1HSN A;  1J46 A;  1V64 A;  3TMM A;  1HRZ A;  1E7J A;  2GZK A;  2CTO A;  2LEF A;  1J3C A;  2YRQ A;  2RTU A;  1AAB A;  1L8Y A;  1NHM A;  4A3N A;  1WXL A;  3U2B C;  2CS1 A;  2CRJ A;  2LHJ A;  1HME A;  1CKT A;  1L8Z A;  2YUK A;  1K99 A;  3F27 D;  1HMA A;  1I11 A;  3TQ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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