1HPUA

5'-nucleotidase (closed form), complex with ampcp
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
525
structure length
525
Chain Sequence
YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords 5'-NUCLEOTIDASE
publication title Mechanism of hydrolysis of phosphate esters by the dimetal center of 5'-nucleotidase based on crystal structures.
pubmed doi rcsb
source organism Escherichia coli
total genus 174
structure length 525
sequence length 525
chains with identical sequence B, C, D
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2000-12-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1hpuA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 1hpuA02
1IT6A 3H62B 4O5GA 4UT2A 1HP1A 1QFCA 4HD0A 1II7A 1QHWA 4ORCA 3H69A 3ICFA 5IOHA 5DNYA 1OIEA 1NNWA 1HPUA 1MF8A 3DSDA 4LTYA 2KKNA 3K7WC 3E7AA 4DHLA 1XM7A 3RL4A 4O4KA 1HO5A 3LL8A 4UT3A 3IVEA 5F3WA 3DW8C 3CK2A 4DT2A 2WDEA 2JOGA 1KBPA 4KKZA 5EQVA 3IB7A 4MP0A 4O43A 2HY1A 2P6BA 3EGGA 3QFNA 1TCOA 5J28A 2DFJA 2USHA 4J6OA 1T70A 4MOYA 4DSYA 1WARA 3THOB 1V73A 1S70A 1UF3A 3JYFA 2NPPC 4G9JA 2QJCA 2ZBMA 2Z72A 3H63A 4IYPC 1Z2XA 2WDCA 4H1YP 1S8EA 4UT3B 1M63A 2Z1AA 5B8IA 1S3NA 2HYOA 3FGAC 2GJUA 4YKEA 3KBPA 3RL3A 2Z06A 2NYMC 3V4YA 2BQ8X 3IVDA 3AUZA 4ZX2A 3QFKA 5JJTA 3E7BA 4F0ZA 4OR9A 3AV0A 4H2BA 4UWQA 1UTEA 1S3LA 4LU9A 5JPFA 2WDFA 1FJMA 4LACC 2BCDA 1AUIA 4M0VA 1XZWA 3QFMA 4ORAA 2XMOA 2AHDA 4V0VA 3QFOA 3H66A 1Z2WA 2IAEC 5JPEA 1U32A 2CV9A 2YVTA 2IE3C 3DSCA 3H60A 4H2GA 1S95A 4XPNA 2WDDA 3QG5C 1S3MA 2NYLC 2R17A 3ZU0A 3TGHA 3C5WC 4MOVA 1USHA 2NXFA 3H67A 3RL5A 4WWLA 4KBPA 3PSNA 3IB8A 4FCXA 3N5UA 3P71C 1WAO1 1T71A 4H2FA 4FBQA 4TUIA 1OIDA 4I5LC 5C1VA 4O24A 5GTUA 2QFRA 2BDXA 3EGHA 4H2IA 5INBA 4Q7FA 3THNA 2HYPA 1OI8A 3H68A 4I5NC 3GVEA 1W24A 4B2OA 3H61A 4ZVZA 2O8GA 3T1IA 4FBWA 4V0XA 4NZVA 2O8AA 1JK7A 1G5BA 4V0WA 4TUGA 3K7VC 4IL1A 3RQZA 2A22A 3PSOA 4FBKA 2QFPA 4H1SA 1SU1A 5HPEA 2IE4C 2Q8UA 4JA7A 3H64A 4ORBA 3C9FA 3ZTVA 4JA9A 3HVQA
chains in the Genus database with same CATH superfamily
1IT6A 3H62B 4O5GA 4UT2A 1HP1A 1QFCA 4HD0A 1II7A 1QHWA 4ORCA 3H69A 3ICFA 5IOHA 5DNYA 1OIEA 1NNWA 1HPUA 1MF8A 3DSDA 3D03A 4LTYA 2KKNA 3K7WC 3E7AA 4DHLA 1XM7A 3RL4A 4O4KA 1HO5A 3LL8A 4UT3A 3IVEA 5F3WA 3DW8C 3CK2A 4DT2A 2WDEA 2JOGA 1KBPA 4KKZA 5EQVA 3IB7A 4MP0A 4O43A 2HY1A 2P6BA 3EGGA 3QFNA 1TCOA 5J28A 2DFJA 2USHA 4J6OA 1T70A 4MOYA 4DSYA 1WARA 3THOB 1V73A 1S70A 1UF3A 3JYFA 2NPPC 4G9JA 2QJCA 2ZBMA 2Z72A 3H63A 4IYPC 1Z2XA 2WDCA 4H1YP 2ZOAA 1S8EA 4UT3B 1M63A 2Z1AA 5B8IA 1S3NA 2HYOA 3FGAC 2GJUA 4YKEA 3KBPA 3RL3A 2Z06A 2NYMC 3V4YA 2BQ8X 3IVDA 3AUZA 4ZX2A 3QFKA 5JJTA 3E7BA 4F0ZA 4OR9A 2ZO9B 3AV0A 4H2BA 4UWQA 1UTEA 1S3LA 4LU9A 5JPFA 2WDFA 1FJMA 4LACC 2BCDA 1AUIA 4M0VA 1XZWA 3QFMA 4ORAA 2XMOA 2AHDA 4V0VA 3QFOA 3H66A 1Z2WA 2IAEC 5JPEA 1U32A 2CV9A 2YVTA 2IE3C 3DSCA 2DXLA 3E0JA 3H60A 4H2GA 1S95A 4XPNA 2WDDA 3QG5C 1S3MA 2NYLC 2R17A 3ZU0A 3TGHA 3C5WC 4MOVA 1USHA 2DXNA 2NXFA 3H67A 3RL5A 4WWLA 4KBPA 3PSNA 3IB8A 4FCXA 3N5UA 3P71C 1WAO1 1T71A 4H2FA 4FBQA 4TUIA 1OIDA 4I5LC 5C1VA 4O24A 5GTUA 2QFRA 2BDXA 3EGHA 4H2IA 5INBA 4Q7FA 3THNA 2HYPA 1OI8A 3H68A 4I5NC 3GVEA 1W24A 4B2OA 3H61A 4ZVZA 2O8GA 3T1IA 4FBWA 4V0XA 4NZVA 2O8AA 1JK7A 1G5BA 4V0WA 4TUGA 3K7VC 4IL1A 3RQZA 2A22A 3FLOA 3PSOA 4FBKA 2QFPA 4H1SA 1SU1A 5HPEA 2IE4C 2Q8UA 4JA7A 3H64A 4ORBA 2YEQA 3C9FA 3ZTVA 4JA9A 3HVQA
chains in the Genus database with same CATH topology
1IT6A 3H62B 4O5GA 4UT2A 1HP1A 1QFCA 4HD0A 1II7A 1QHWA 4ORCA 3H69A 3ICFA 5IOHA 5DNYA 1OIEA 1NNWA 1HPUA 1MF8A 3DSDA 3D03A 4LTYA 2KKNA 3K7WC 3E7AA 4DHLA 1XM7A 3RL4A 4O4KA 1HO5A 3LL8A 4UT3A 3IVEA 5F3WA 3DW8C 3CK2A 4DT2A 2WDEA 2JOGA 1KBPA 4KKZA 5EQVA 3IB7A 4MP0A 4O43A 2HY1A 2P6BA 3EGGA 3QFNA 1TCOA 5J28A 2DFJA 2USHA 4J6OA 1T70A 4MOYA 4DSYA 1WARA 3THOB 1V73A 1S70A 1UF3A 3JYFA 2NPPC 4G9JA 2QJCA 2ZBMA 2Z72A 3H63A 4IYPC 1Z2XA 2WDCA 4H1YP 2ZOAA 1S8EA 4UT3B 1M63A 2Z1AA 5B8IA 1S3NA 2HYOA 3FGAC 2GJUA 4YKEA 3KBPA 3RL3A 2Z06A 2NYMC 3V4YA 2BQ8X 3IVDA 3AUZA 4ZX2A 3QFKA 5JJTA 3E7BA 4F0ZA 4OR9A 2ZO9B 3AV0A 4H2BA 4UWQA 1UTEA 1S3LA 4LU9A 5JPFA 2WDFA 1FJMA 4LACC 2BCDA 1AUIA 4M0VA 1XZWA 3QFMA 4ORAA 2XMOA 2AHDA 4V0VA 3QFOA 3H66A 1Z2WA 2IAEC 5JPEA 1U32A 2CV9A 2YVTA 2IE3C 3DSCA 2DXLA 3E0JA 3H60A 4H2GA 1S95A 4XPNA 2WDDA 3QG5C 1S3MA 2NYLC 2R17A 3ZU0A 3TGHA 3C5WC 4MOVA 1USHA 2DXNA 2NXFA 3H67A 3RL5A 4WWLA 4KBPA 3PSNA 3IB8A 4FCXA 3N5UA 3P71C 1WAO1 1T71A 4H2FA 4FBQA 4TUIA 1OIDA 4I5LC 5C1VA 4O24A 5GTUA 2QFRA 2BDXA 3EGHA 4H2IA 5INBA 4Q7FA 3THNA 2HYPA 1OI8A 3H68A 4I5NC 3GVEA 1W24A 4B2OA 3H61A 4ZVZA 2O8GA 3T1IA 4FBWA 4V0XA 4NZVA 2O8AA 1JK7A 1G5BA 4V0WA 4TUGA 3K7VC 4IL1A 3RQZA 2A22A 3FLOA 3PSOA 4FBKA 2QFPA 4H1SA 1SU1A 5HPEA 2IE4C 2Q8UA 4JA7A 3H64A 4ORBA 2YEQA 3C9FA 3ZTVA 4JA9A 3HVQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IT6 A;  3H62 B;  4O5G A;  4UT2 A;  1HP1 A;  1QFC A;  4HD0 A;  1II7 A;  1QHW A;  4ORC A;  3H69 A;  3ICF A;  5IOH A;  5DNY A;  1OIE A;  1NNW A;  1HPU A;  1MF8 A;  3DSD A;  4LTY A;  2KKN A;  3K7W C;  3E7A A;  4DHL A;  1XM7 A;  3RL4 A;  4O4K A;  1HO5 A;  3LL8 A;  4UT3 A;  3IVE A;  5F3W A;  3DW8 C;  3CK2 A;  4DT2 A;  2WDE A;  2JOG A;  1KBP A;  4KKZ A;  5EQV A;  3IB7 A;  4MP0 A;  4O43 A;  2HY1 A;  2P6B A;  3EGG A;  3QFN A;  1TCO A;  5J28 A;  2DFJ A;  2USH A;  4J6O A;  1T70 A;  4MOY A;  4DSY A;  1WAR A;  3THO B;  1V73 A;  1S70 A;  1UF3 A;  3JYF A;  2NPP C;  4G9J A;  2QJC A;  2ZBM A;  2Z72 A;  3H63 A;  4IYP C;  1Z2X A;  2WDC A;  4H1Y P;  1S8E A;  4UT3 B;  1M63 A;  2Z1A A;  5B8I A;  1S3N A;  2HYO A;  3FGA C;  2GJU A;  4YKE A;  3KBP A;  3RL3 A;  2Z06 A;  2NYM C;  3V4Y A;  2BQ8 X;  3IVD A;  3AUZ A;  4ZX2 A;  3QFK A;  5JJT A;  3E7B A;  4F0Z A;  4OR9 A;  3AV0 A;  4H2B A;  4UWQ A;  1UTE A;  1S3L A;  4LU9 A;  5JPF A;  2WDF A;  1FJM A;  4LAC C;  2BCD A;  1AUI A;  4M0V A;  1XZW A;  3QFM A;  4ORA A;  2XMO A;  2AHD A;  4V0V A;  3QFO A;  3H66 A;  1Z2W A;  2IAE C;  5JPE A;  1U32 A;  2CV9 A;  2YVT A;  2IE3 C;  3DSC A;  3H60 A;  4H2G A;  1S95 A;  4XPN A;  2WDD A;  3QG5 C;  1S3M A;  2NYL C;  2R17 A;  3ZU0 A;  3TGH A;  3C5W C;  4MOV A;  1USH A;  2NXF A;  3H67 A;  3RL5 A;  4WWL A;  4KBP A;  3PSN A;  3IB8 A;  4FCX A;  3N5U A;  3P71 C;  1WAO 1;  1T71 A;  4H2F A;  4FBQ A;  4TUI A;  1OID A;  4I5L C;  5C1V A;  4O24 A;  5GTU A;  2QFR A;  2BDX A;  3EGH A;  4H2I A;  5INB A;  4Q7F A;  3THN A;  2HYP A;  1OI8 A;  3H68 A;  4I5N C;  3GVE A;  1W24 A;  4B2O A;  3H61 A;  4ZVZ A;  2O8G A;  3T1I A;  4FBW A;  4V0X A;  4NZV A;  2O8A A;  1JK7 A;  1G5B A;  4V0W A;  4TUG A;  3K7V C;  4IL1 A;  3RQZ A;  2A22 A;  3PSO A;  4FBK A;  2QFP A;  4H1S A;  1SU1 A;  5HPE A;  2IE4 C;  2Q8U A;  4JA7 A;  3H64 A;  4ORB A;  3C9F A;  3ZTV A;  4JA9 A;  3HVQ A; 
#chains in the Genus database with same CATH topology
 1IT6 A;  3H62 B;  4O5G A;  4UT2 A;  1HP1 A;  1QFC A;  4HD0 A;  1II7 A;  1QHW A;  4ORC A;  3H69 A;  3ICF A;  5IOH A;  5DNY A;  1OIE A;  1NNW A;  1HPU A;  1MF8 A;  3DSD A;  3D03 A;  4LTY A;  2KKN A;  3K7W C;  3E7A A;  4DHL A;  1XM7 A;  3RL4 A;  4O4K A;  1HO5 A;  3LL8 A;  4UT3 A;  3IVE A;  5F3W A;  3DW8 C;  3CK2 A;  4DT2 A;  2WDE A;  2JOG A;  1KBP A;  4KKZ A;  5EQV A;  3IB7 A;  4MP0 A;  4O43 A;  2HY1 A;  2P6B A;  3EGG A;  3QFN A;  1TCO A;  5J28 A;  2DFJ A;  2USH A;  4J6O A;  1T70 A;  4MOY A;  4DSY A;  1WAR A;  3THO B;  1V73 A;  1S70 A;  1UF3 A;  3JYF A;  2NPP C;  4G9J A;  2QJC A;  2ZBM A;  2Z72 A;  3H63 A;  4IYP C;  1Z2X A;  2WDC A;  4H1Y P;  2ZOA A;  1S8E A;  4UT3 B;  1M63 A;  2Z1A A;  5B8I A;  1S3N A;  2HYO A;  3FGA C;  2GJU A;  4YKE A;  3KBP A;  3RL3 A;  2Z06 A;  2NYM C;  3V4Y A;  2BQ8 X;  3IVD A;  3AUZ A;  4ZX2 A;  3QFK A;  5JJT A;  3E7B A;  4F0Z A;  4OR9 A;  2ZO9 B;  3AV0 A;  4H2B A;  4UWQ A;  1UTE A;  1S3L A;  4LU9 A;  5JPF A;  2WDF A;  1FJM A;  4LAC C;  2BCD A;  1AUI A;  4M0V A;  1XZW A;  3QFM A;  4ORA A;  2XMO A;  2AHD A;  4V0V A;  3QFO A;  3H66 A;  1Z2W A;  2IAE C;  5JPE A;  1U32 A;  2CV9 A;  2YVT A;  2IE3 C;  3DSC A;  2DXL A;  3E0J A;  3H60 A;  4H2G A;  1S95 A;  4XPN A;  2WDD A;  3QG5 C;  1S3M A;  2NYL C;  2R17 A;  3ZU0 A;  3TGH A;  3C5W C;  4MOV A;  1USH A;  2DXN A;  2NXF A;  3H67 A;  3RL5 A;  4WWL A;  4KBP A;  3PSN A;  3IB8 A;  4FCX A;  3N5U A;  3P71 C;  1WAO 1;  1T71 A;  4H2F A;  4FBQ A;  4TUI A;  1OID A;  4I5L C;  5C1V A;  4O24 A;  5GTU A;  2QFR A;  2BDX A;  3EGH A;  4H2I A;  5INB A;  4Q7F A;  3THN A;  2HYP A;  1OI8 A;  3H68 A;  4I5N C;  3GVE A;  1W24 A;  4B2O A;  3H61 A;  4ZVZ A;  2O8G A;  3T1I A;  4FBW A;  4V0X A;  4NZV A;  2O8A A;  1JK7 A;  1G5B A;  4V0W A;  4TUG A;  3K7V C;  4IL1 A;  3RQZ A;  2A22 A;  3FLO A;  3PSO A;  4FBK A;  2QFP A;  4H1S A;  1SU1 A;  5HPE A;  2IE4 C;  2Q8U A;  4JA7 A;  3H64 A;  4ORB A;  2YEQ A;  3C9F A;  3ZTV A;  4JA9 A;  3HVQ A; 
#chains in the Genus database with same CATH homology
 1IT6 A;  3H62 B;  4O5G A;  4UT2 A;  1HP1 A;  1QFC A;  4HD0 A;  1II7 A;  1QHW A;  4ORC A;  3H69 A;  3ICF A;  5IOH A;  5DNY A;  1OIE A;  1NNW A;  1HPU A;  1MF8 A;  3DSD A;  3D03 A;  4LTY A;  2KKN A;  3K7W C;  3E7A A;  4DHL A;  1XM7 A;  3RL4 A;  4O4K A;  1HO5 A;  3LL8 A;  4UT3 A;  3IVE A;  5F3W A;  3DW8 C;  3CK2 A;  4DT2 A;  2WDE A;  2JOG A;  1KBP A;  4KKZ A;  5EQV A;  3IB7 A;  4MP0 A;  4O43 A;  2HY1 A;  2P6B A;  3EGG A;  3QFN A;  1TCO A;  5J28 A;  2DFJ A;  2USH A;  4J6O A;  1T70 A;  4MOY A;  4DSY A;  1WAR A;  3THO B;  1V73 A;  1S70 A;  1UF3 A;  3JYF A;  2NPP C;  4G9J A;  2QJC A;  2ZBM A;  2Z72 A;  3H63 A;  4IYP C;  1Z2X A;  2WDC A;  4H1Y P;  2ZOA A;  1S8E A;  4UT3 B;  1M63 A;  2Z1A A;  5B8I A;  1S3N A;  2HYO A;  3FGA C;  2GJU A;  4YKE A;  3KBP A;  3RL3 A;  2Z06 A;  2NYM C;  3V4Y A;  2BQ8 X;  3IVD A;  3AUZ A;  4ZX2 A;  3QFK A;  5JJT A;  3E7B A;  4F0Z A;  4OR9 A;  2ZO9 B;  3AV0 A;  4H2B A;  4UWQ A;  1UTE A;  1S3L A;  4LU9 A;  5JPF A;  2WDF A;  1FJM A;  4LAC C;  2BCD A;  1AUI A;  4M0V A;  1XZW A;  3QFM A;  4ORA A;  2XMO A;  2AHD A;  4V0V A;  3QFO A;  3H66 A;  1Z2W A;  2IAE C;  5JPE A;  1U32 A;  2CV9 A;  2YVT A;  2IE3 C;  3DSC A;  2DXL A;  3E0J A;  3H60 A;  4H2G A;  1S95 A;  4XPN A;  2WDD A;  3QG5 C;  1S3M A;  2NYL C;  2R17 A;  3ZU0 A;  3TGH A;  3C5W C;  4MOV A;  1USH A;  2DXN A;  2NXF A;  3H67 A;  3RL5 A;  4WWL A;  4KBP A;  3PSN A;  3IB8 A;  4FCX A;  3N5U A;  3P71 C;  1WAO 1;  1T71 A;  4H2F A;  4FBQ A;  4TUI A;  1OID A;  4I5L C;  5C1V A;  4O24 A;  5GTU A;  2QFR A;  2BDX A;  3EGH A;  4H2I A;  5INB A;  4Q7F A;  3THN A;  2HYP A;  1OI8 A;  3H68 A;  4I5N C;  3GVE A;  1W24 A;  4B2O A;  3H61 A;  4ZVZ A;  2O8G A;  3T1I A;  4FBW A;  4V0X A;  4NZV A;  2O8A A;  1JK7 A;  1G5B A;  4V0W A;  4TUG A;  3K7V C;  4IL1 A;  3RQZ A;  2A22 A;  3FLO A;  3PSO A;  4FBK A;  2QFP A;  4H1S A;  1SU1 A;  5HPE A;  2IE4 C;  2Q8U A;  4JA7 A;  3H64 A;  4ORB A;  2YEQ A;  3C9F A;  3ZTV A;  4JA9 A;  3HVQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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