1HPUA

5'-nucleotidase (closed form), complex with ampcp
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
525
structure length
525
Chain Sequence
YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Escherichia coli
publication title Mechanism of hydrolysis of phosphate esters by the dimetal center of 5'-nucleotidase based on crystal structures.
pubmed doi rcsb
molecule keywords 5'-NUCLEOTIDASE
total genus 174
structure length 525
sequence length 525
chains with identical sequence B, C, D
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2000-12-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1hpuA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 1hpuA02
4O4KA 4H2GA 4H1YP 3PSNA 4ORBA 4WWLA 5EQVA 2NYMC 3PSOA 5C1VA 5JPEA 5J28A 2GJUA 3FGAC 3H60A 4IL1A 4FBQA 3GVEA 4O5GA 4H2BA 1QHWA 4LTYA 4V0WA 2IE4C 1S3NA 3ZU0A 1UF3A 2WDEA 3AV0A 3C9FA 4Q7FA 4H2IA 4H2FA 2HY1A 1XZWA 1HO5A 2A22A 3EGHA 1S70A 2Q8UA 3H66A 1G5BA 2AHDA 4FBKA 1U32A 4B2OA 2QFRA 2IE3C 2DFJA 3IVDA 4IYPC 4V0XA 3H69A 3IB8A 3ICFA 3JYFA 4DT2A 3EGGA 2USHA 4H1SA 4M0VA 4UT3B 3QFNA 4FBWA 1QFCA 1S8EA 1NNWA 4UT3A 4TUGA 1T71A 1T70A 3HVQA 3QFMA 4OR9A 4J6OA 3K7WC 2Z72A 4ORCA 3H67A 5INBA 2Z06A 2O8AA 2JOGA 4FCXA 1Z2XA 3AUZA 1FJMA 4DSYA 1AUIA 4ORAA 3IVEA 2IAEC 3C5WC 3ZTVA 3H61A 4ZVZA 4G9JA 1Z2WA 3THOB 2YVTA 4I5LC 2O8GA 2XMOA 3DSCA 3H64A 2QJCA 1JK7A 2BQ8X 3QFKA 4XPNA 4KKZA 4TUIA 1OIEA 1SU1A 3DSDA 2WDCA 5GTUA 2WDFA 4DHLA 3V4YA 5JJTA 2WDDA 3KBPA 4I5NC 3THNA 3N5UA 1MF8A 2BCDA 1USHA 2NPPC 1UTEA 3TGHA 3CK2A 3DW8C 2P6BA 4LU9A 1IT6A 1W24A 2NXFA 4MP0A 4ZX2A 1S3MA 5F3WA 1HPUA 1M63A 3H62B 2R17A 2NYLC 3H68A 5JPFA 4V0VA 4HD0A 3IB7A 1HP1A 3RL3A 2CV9A 3LL8A 3H63A 5B8IA 5DNYA 2KKNA 3E7AA 3P71C 3RL4A 4MOVA 4MOYA 1TCOA 1II7A 5HPEA 4NZVA 4O24A 3E7BA 2Z1AA 4JA9A 2HYPA 1S3LA 4KBPA 4UWQA 4UT2A 2ZBMA 5IOHA 1OI8A 1OIDA 1XM7A 2HYOA 3RQZA 3QFOA 1KBPA 1S95A 2BDXA 1WARA 3T1IA 4JA7A 2QFPA 1V73A 4F0ZA 4YKEA 4LACC 3RL5A 3K7VC 3QG5C 4O43A 1WAO1
chains in the Genus database with same CATH superfamily
4O4KA 4H2GA 4H1YP 3PSNA 4ORBA 4WWLA 5EQVA 2NYMC 3PSOA 5C1VA 5JPEA 5J28A 2GJUA 3FGAC 3H60A 4IL1A 4FBQA 3GVEA 4O5GA 4H2BA 1QHWA 4LTYA 4V0WA 2IE4C 1S3NA 3ZU0A 1UF3A 3E0JA 2WDEA 3AV0A 3C9FA 4Q7FA 4H2IA 4H2FA 2HY1A 1XZWA 1HO5A 2A22A 3EGHA 1S70A 2Q8UA 3H66A 1G5BA 2AHDA 4FBKA 1U32A 4B2OA 2QFRA 2IE3C 2DFJA 3IVDA 4IYPC 4V0XA 3H69A 3IB8A 3ICFA 3JYFA 4DT2A 3EGGA 2USHA 4H1SA 4M0VA 4UT3B 3QFNA 4FBWA 1QFCA 1S8EA 1NNWA 4UT3A 4TUGA 1T71A 3FLOA 1T70A 3HVQA 3QFMA 2ZOAA 4OR9A 4J6OA 3K7WC 2Z72A 4ORCA 3H67A 5INBA 2YEQA 2DXNA 2Z06A 2O8AA 2JOGA 4FCXA 1Z2XA 3AUZA 1FJMA 4DSYA 1AUIA 4ORAA 3IVEA 2IAEC 2DXLA 3C5WC 3D03A 3ZTVA 3H61A 4ZVZA 4G9JA 1Z2WA 3THOB 2YVTA 4I5LC 2O8GA 2XMOA 3DSCA 2ZO9B 3H64A 2QJCA 1JK7A 2BQ8X 3QFKA 4XPNA 4KKZA 4TUIA 1OIEA 1SU1A 3DSDA 2WDCA 5GTUA 2WDFA 4DHLA 3V4YA 5JJTA 2WDDA 3KBPA 4I5NC 3THNA 3N5UA 1MF8A 2BCDA 1USHA 2NPPC 1UTEA 3TGHA 3CK2A 3DW8C 2P6BA 4LU9A 1IT6A 1W24A 2NXFA 4MP0A 4ZX2A 1S3MA 5F3WA 1HPUA 1M63A 3H62B 2R17A 2NYLC 3H68A 5JPFA 4V0VA 4HD0A 3IB7A 1HP1A 3RL3A 2CV9A 3LL8A 3H63A 5B8IA 5DNYA 2KKNA 3E7AA 3P71C 3RL4A 4MOVA 4MOYA 1TCOA 1II7A 5HPEA 4NZVA 4O24A 3E7BA 2Z1AA 4JA9A 2HYPA 1S3LA 4KBPA 4UWQA 4UT2A 2ZBMA 5IOHA 1OI8A 1OIDA 1XM7A 2HYOA 3RQZA 3QFOA 1KBPA 1S95A 2BDXA 1WARA 3T1IA 4JA7A 2QFPA 1V73A 4F0ZA 4YKEA 4LACC 3RL5A 3K7VC 3QG5C 4O43A 1WAO1
chains in the Genus database with same CATH topology
4O4KA 4H2GA 4H1YP 3PSNA 4ORBA 4WWLA 5EQVA 2NYMC 3PSOA 5C1VA 5JPEA 5J28A 2GJUA 3FGAC 3H60A 4IL1A 4FBQA 3GVEA 4O5GA 4H2BA 1QHWA 4LTYA 4V0WA 2IE4C 1S3NA 3ZU0A 1UF3A 3E0JA 2WDEA 3AV0A 3C9FA 4Q7FA 4H2IA 4H2FA 2HY1A 1XZWA 1HO5A 2A22A 3EGHA 1S70A 2Q8UA 3H66A 1G5BA 2AHDA 4FBKA 1U32A 4B2OA 2QFRA 2IE3C 2DFJA 3IVDA 4IYPC 4V0XA 3H69A 3IB8A 3ICFA 3JYFA 4DT2A 3EGGA 2USHA 4H1SA 4M0VA 4UT3B 3QFNA 4FBWA 1QFCA 1S8EA 1NNWA 4UT3A 4TUGA 1T71A 3FLOA 1T70A 3HVQA 3QFMA 2ZOAA 4OR9A 4J6OA 3K7WC 2Z72A 4ORCA 3H67A 5INBA 2YEQA 2DXNA 2Z06A 2O8AA 2JOGA 4FCXA 1Z2XA 3AUZA 1FJMA 4DSYA 1AUIA 4ORAA 3IVEA 2IAEC 2DXLA 3C5WC 3D03A 3ZTVA 3H61A 4ZVZA 4G9JA 1Z2WA 3THOB 2YVTA 4I5LC 2O8GA 2XMOA 3DSCA 2ZO9B 3H64A 2QJCA 1JK7A 2BQ8X 3QFKA 4XPNA 4KKZA 4TUIA 1OIEA 1SU1A 3DSDA 2WDCA 5GTUA 2WDFA 4DHLA 3V4YA 5JJTA 2WDDA 3KBPA 4I5NC 3THNA 3N5UA 1MF8A 2BCDA 1USHA 2NPPC 1UTEA 3TGHA 3CK2A 3DW8C 2P6BA 4LU9A 1IT6A 1W24A 2NXFA 4MP0A 4ZX2A 1S3MA 5F3WA 1HPUA 1M63A 3H62B 2R17A 2NYLC 3H68A 5JPFA 4V0VA 4HD0A 3IB7A 1HP1A 3RL3A 2CV9A 3LL8A 3H63A 5B8IA 5DNYA 2KKNA 3E7AA 3P71C 3RL4A 4MOVA 4MOYA 1TCOA 1II7A 5HPEA 4NZVA 4O24A 3E7BA 2Z1AA 4JA9A 2HYPA 1S3LA 4KBPA 4UWQA 4UT2A 2ZBMA 5IOHA 1OI8A 1OIDA 1XM7A 2HYOA 3RQZA 3QFOA 1KBPA 1S95A 2BDXA 1WARA 3T1IA 4JA7A 2QFPA 1V73A 4F0ZA 4YKEA 4LACC 3RL5A 3K7VC 3QG5C 4O43A 1WAO1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O4K A;  4H2G A;  4H1Y P;  3PSN A;  4ORB A;  4WWL A;  5EQV A;  2NYM C;  3PSO A;  5C1V A;  5JPE A;  5J28 A;  2GJU A;  3FGA C;  3H60 A;  4IL1 A;  4FBQ A;  3GVE A;  4O5G A;  4H2B A;  1QHW A;  4LTY A;  4V0W A;  2IE4 C;  1S3N A;  3ZU0 A;  1UF3 A;  2WDE A;  3AV0 A;  3C9F A;  4Q7F A;  4H2I A;  4H2F A;  2HY1 A;  1XZW A;  1HO5 A;  2A22 A;  3EGH A;  1S70 A;  2Q8U A;  3H66 A;  1G5B A;  2AHD A;  4FBK A;  1U32 A;  4B2O A;  2QFR A;  2IE3 C;  2DFJ A;  3IVD A;  4IYP C;  4V0X A;  3H69 A;  3IB8 A;  3ICF A;  3JYF A;  4DT2 A;  3EGG A;  2USH A;  4H1S A;  4M0V A;  4UT3 B;  3QFN A;  4FBW A;  1QFC A;  1S8E A;  1NNW A;  4UT3 A;  4TUG A;  1T71 A;  1T70 A;  3HVQ A;  3QFM A;  4OR9 A;  4J6O A;  3K7W C;  2Z72 A;  4ORC A;  3H67 A;  5INB A;  2Z06 A;  2O8A A;  2JOG A;  4FCX A;  1Z2X A;  3AUZ A;  1FJM A;  4DSY A;  1AUI A;  4ORA A;  3IVE A;  2IAE C;  3C5W C;  3ZTV A;  3H61 A;  4ZVZ A;  4G9J A;  1Z2W A;  3THO B;  2YVT A;  4I5L C;  2O8G A;  2XMO A;  3DSC A;  3H64 A;  2QJC A;  1JK7 A;  2BQ8 X;  3QFK A;  4XPN A;  4KKZ A;  4TUI A;  1OIE A;  1SU1 A;  3DSD A;  2WDC A;  5GTU A;  2WDF A;  4DHL A;  3V4Y A;  5JJT A;  2WDD A;  3KBP A;  4I5N C;  3THN A;  3N5U A;  1MF8 A;  2BCD A;  1USH A;  2NPP C;  1UTE A;  3TGH A;  3CK2 A;  3DW8 C;  2P6B A;  4LU9 A;  1IT6 A;  1W24 A;  2NXF A;  4MP0 A;  4ZX2 A;  1S3M A;  5F3W A;  1HPU A;  1M63 A;  3H62 B;  2R17 A;  2NYL C;  3H68 A;  5JPF A;  4V0V A;  4HD0 A;  3IB7 A;  1HP1 A;  3RL3 A;  2CV9 A;  3LL8 A;  3H63 A;  5B8I A;  5DNY A;  2KKN A;  3E7A A;  3P71 C;  3RL4 A;  4MOV A;  4MOY A;  1TCO A;  1II7 A;  5HPE A;  4NZV A;  4O24 A;  3E7B A;  2Z1A A;  4JA9 A;  2HYP A;  1S3L A;  4KBP A;  4UWQ A;  4UT2 A;  2ZBM A;  5IOH A;  1OI8 A;  1OID A;  1XM7 A;  2HYO A;  3RQZ A;  3QFO A;  1KBP A;  1S95 A;  2BDX A;  1WAR A;  3T1I A;  4JA7 A;  2QFP A;  1V73 A;  4F0Z A;  4YKE A;  4LAC C;  3RL5 A;  3K7V C;  3QG5 C;  4O43 A;  1WAO 1; 
#chains in the Genus database with same CATH topology
 4O4K A;  4H2G A;  4H1Y P;  3PSN A;  4ORB A;  4WWL A;  5EQV A;  2NYM C;  3PSO A;  5C1V A;  5JPE A;  5J28 A;  2GJU A;  3FGA C;  3H60 A;  4IL1 A;  4FBQ A;  3GVE A;  4O5G A;  4H2B A;  1QHW A;  4LTY A;  4V0W A;  2IE4 C;  1S3N A;  3ZU0 A;  1UF3 A;  3E0J A;  2WDE A;  3AV0 A;  3C9F A;  4Q7F A;  4H2I A;  4H2F A;  2HY1 A;  1XZW A;  1HO5 A;  2A22 A;  3EGH A;  1S70 A;  2Q8U A;  3H66 A;  1G5B A;  2AHD A;  4FBK A;  1U32 A;  4B2O A;  2QFR A;  2IE3 C;  2DFJ A;  3IVD A;  4IYP C;  4V0X A;  3H69 A;  3IB8 A;  3ICF A;  3JYF A;  4DT2 A;  3EGG A;  2USH A;  4H1S A;  4M0V A;  4UT3 B;  3QFN A;  4FBW A;  1QFC A;  1S8E A;  1NNW A;  4UT3 A;  4TUG A;  1T71 A;  3FLO A;  1T70 A;  3HVQ A;  3QFM A;  2ZOA A;  4OR9 A;  4J6O A;  3K7W C;  2Z72 A;  4ORC A;  3H67 A;  5INB A;  2YEQ A;  2DXN A;  2Z06 A;  2O8A A;  2JOG A;  4FCX A;  1Z2X A;  3AUZ A;  1FJM A;  4DSY A;  1AUI A;  4ORA A;  3IVE A;  2IAE C;  2DXL A;  3C5W C;  3D03 A;  3ZTV A;  3H61 A;  4ZVZ A;  4G9J A;  1Z2W A;  3THO B;  2YVT A;  4I5L C;  2O8G A;  2XMO A;  3DSC A;  2ZO9 B;  3H64 A;  2QJC A;  1JK7 A;  2BQ8 X;  3QFK A;  4XPN A;  4KKZ A;  4TUI A;  1OIE A;  1SU1 A;  3DSD A;  2WDC A;  5GTU A;  2WDF A;  4DHL A;  3V4Y A;  5JJT A;  2WDD A;  3KBP A;  4I5N C;  3THN A;  3N5U A;  1MF8 A;  2BCD A;  1USH A;  2NPP C;  1UTE A;  3TGH A;  3CK2 A;  3DW8 C;  2P6B A;  4LU9 A;  1IT6 A;  1W24 A;  2NXF A;  4MP0 A;  4ZX2 A;  1S3M A;  5F3W A;  1HPU A;  1M63 A;  3H62 B;  2R17 A;  2NYL C;  3H68 A;  5JPF A;  4V0V A;  4HD0 A;  3IB7 A;  1HP1 A;  3RL3 A;  2CV9 A;  3LL8 A;  3H63 A;  5B8I A;  5DNY A;  2KKN A;  3E7A A;  3P71 C;  3RL4 A;  4MOV A;  4MOY A;  1TCO A;  1II7 A;  5HPE A;  4NZV A;  4O24 A;  3E7B A;  2Z1A A;  4JA9 A;  2HYP A;  1S3L A;  4KBP A;  4UWQ A;  4UT2 A;  2ZBM A;  5IOH A;  1OI8 A;  1OID A;  1XM7 A;  2HYO A;  3RQZ A;  3QFO A;  1KBP A;  1S95 A;  2BDX A;  1WAR A;  3T1I A;  4JA7 A;  2QFP A;  1V73 A;  4F0Z A;  4YKE A;  4LAC C;  3RL5 A;  3K7V C;  3QG5 C;  4O43 A;  1WAO 1; 
#chains in the Genus database with same CATH homology
 4O4K A;  4H2G A;  4H1Y P;  3PSN A;  4ORB A;  4WWL A;  5EQV A;  2NYM C;  3PSO A;  5C1V A;  5JPE A;  5J28 A;  2GJU A;  3FGA C;  3H60 A;  4IL1 A;  4FBQ A;  3GVE A;  4O5G A;  4H2B A;  1QHW A;  4LTY A;  4V0W A;  2IE4 C;  1S3N A;  3ZU0 A;  1UF3 A;  3E0J A;  2WDE A;  3AV0 A;  3C9F A;  4Q7F A;  4H2I A;  4H2F A;  2HY1 A;  1XZW A;  1HO5 A;  2A22 A;  3EGH A;  1S70 A;  2Q8U A;  3H66 A;  1G5B A;  2AHD A;  4FBK A;  1U32 A;  4B2O A;  2QFR A;  2IE3 C;  2DFJ A;  3IVD A;  4IYP C;  4V0X A;  3H69 A;  3IB8 A;  3ICF A;  3JYF A;  4DT2 A;  3EGG A;  2USH A;  4H1S A;  4M0V A;  4UT3 B;  3QFN A;  4FBW A;  1QFC A;  1S8E A;  1NNW A;  4UT3 A;  4TUG A;  1T71 A;  3FLO A;  1T70 A;  3HVQ A;  3QFM A;  2ZOA A;  4OR9 A;  4J6O A;  3K7W C;  2Z72 A;  4ORC A;  3H67 A;  5INB A;  2YEQ A;  2DXN A;  2Z06 A;  2O8A A;  2JOG A;  4FCX A;  1Z2X A;  3AUZ A;  1FJM A;  4DSY A;  1AUI A;  4ORA A;  3IVE A;  2IAE C;  2DXL A;  3C5W C;  3D03 A;  3ZTV A;  3H61 A;  4ZVZ A;  4G9J A;  1Z2W A;  3THO B;  2YVT A;  4I5L C;  2O8G A;  2XMO A;  3DSC A;  2ZO9 B;  3H64 A;  2QJC A;  1JK7 A;  2BQ8 X;  3QFK A;  4XPN A;  4KKZ A;  4TUI A;  1OIE A;  1SU1 A;  3DSD A;  2WDC A;  5GTU A;  2WDF A;  4DHL A;  3V4Y A;  5JJT A;  2WDD A;  3KBP A;  4I5N C;  3THN A;  3N5U A;  1MF8 A;  2BCD A;  1USH A;  2NPP C;  1UTE A;  3TGH A;  3CK2 A;  3DW8 C;  2P6B A;  4LU9 A;  1IT6 A;  1W24 A;  2NXF A;  4MP0 A;  4ZX2 A;  1S3M A;  5F3W A;  1HPU A;  1M63 A;  3H62 B;  2R17 A;  2NYL C;  3H68 A;  5JPF A;  4V0V A;  4HD0 A;  3IB7 A;  1HP1 A;  3RL3 A;  2CV9 A;  3LL8 A;  3H63 A;  5B8I A;  5DNY A;  2KKN A;  3E7A A;  3P71 C;  3RL4 A;  4MOV A;  4MOY A;  1TCO A;  1II7 A;  5HPE A;  4NZV A;  4O24 A;  3E7B A;  2Z1A A;  4JA9 A;  2HYP A;  1S3L A;  4KBP A;  4UWQ A;  4UT2 A;  2ZBM A;  5IOH A;  1OI8 A;  1OID A;  1XM7 A;  2HYO A;  3RQZ A;  3QFO A;  1KBP A;  1S95 A;  2BDX A;  1WAR A;  3T1I A;  4JA7 A;  2QFP A;  1V73 A;  4F0Z A;  4YKE A;  4LAC C;  3RL5 A;  3K7V C;  3QG5 C;  4O43 A;  1WAO 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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