1HPUA

5'-nucleotidase (closed form), complex with ampcp
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
525
structure length
525
Chain Sequence
b'YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism of hydrolysis of phosphate esters by the dimetal center of 5'-nucleotidase based on crystal structures.
pubmed doi rcsb
molecule keywords 5'-NUCLEOTIDASE
source organism Escherichia coli
molecule tags Hydrolase
total genus 174
structure length 525
sequence length 525
chains with identical sequence B, C, D
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2000-12-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1hpuA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 1hpuA02
2WDFA 3P71C 3RL3A 2KKNA 3H68A 4O4KA 4DT2A 4YKEA 2P6BA 4V0XA 2QJCA 4H2BA 3H67A 5J28A 1SU1A 4OR9A 4KKZA 5DNYA 4O24A 5F3WA 1HPUA 2Q8UA 3V4YA 1WARA 2ZBMA 3C5WC 1AUIA 3LL8A 1MF8A 1HP1A 5C1VA 1M63A 4H2FA 4IL1A 1W24A 3RL4A 4LU9A 3H61A 4TUGA 1TCOA 2HYOA 3QFOA 1OIEA 1V73A 3RQZA 4ORAA 3RL5A 3IB8A 3H69A 3DSCA 4IYPC 4I5LC 3H62B 3K7VC 1XM7A 4LTYA 4Q7FA 2IE4C 3H66A 1FJMA 3QFMA 3PSNA 4MOYA 1HO5A 4HD0A 2QFPA 2Z06A 4O43A 4ORCA 5B8IA 4ORBA 1IT6A 3IVDA 2IE3C 4FBKA 2DFJA 2HYPA 2O8GA 3QFKA 2R17A 4XPNA 1G5BA 1KBPA 1Z2XA 2BCDA 2QFRA 3EGGA 3PSOA 1OI8A 4JA7A 4FCXA 4JA9A 5JPFA 1S3NA 2NYMC 4H2GA 3E7AA 3ZTVA 2WDCA 1S3LA 4B2OA 3AUZA 3T1IA 4UT3A 2O8AA 3E7BA 2USHA 4MP0A 4G9JA 5GTUA 5IOHA 1WAO1 2CV9A 2JOGA 3DSDA 2Z1AA 5JJTA 5HPEA 4WWLA 1XZWA 4M0VA 4H1SA 3QG5C 4ZX2A 2YVTA 4NZVA 3GVEA 2BDXA 1JK7A 3IB7A 4UT3B 4J6OA 4LACC 1QFCA 2A22A 1QHWA 4TUIA 4ZVZA 1S8EA 3JYFA 4DSYA 3TGHA 4H1YP 3HVQA 3K7WC 1S3MA 3KBPA 5JPEA 1Z2WA 3EGHA 4V0VA 3H63A 1II7A 1S95A 4FBWA 3C9FA 4KBPA 2XMOA 4UWQA 1UTEA 3THOB 4UT2A 4I5NC 1UF3A 2HY1A 3FGAC 3H60A 3N5UA 2BQ8X 2GJUA 2Z72A 3CK2A 4O5GA 2WDDA 1T70A 2NYLC 2IAEC 5EQVA 2NPPC 4DHLA 1S70A 3AV0A 1U32A 4H2IA 4MOVA 4V0WA 4F0ZA 2AHDA 2NXFA 4FBQA 1OIDA 3DW8C 1NNWA 5INBA 3IVEA 1T71A 1USHA 2WDEA 3THNA 3H64A 3QFNA 3ZU0A 3ICFA
chains in the Genus database with same CATH superfamily
2WDFA 3P71C 3RL3A 2KKNA 3H68A 4O4KA 4DT2A 4YKEA 2P6BA 4V0XA 2QJCA 4H2BA 3H67A 5J28A 1SU1A 4OR9A 4KKZA 5DNYA 4O24A 5F3WA 2ZOAA 1HPUA 2Q8UA 3V4YA 1WARA 2ZBMA 3C5WC 1AUIA 3LL8A 1MF8A 1HP1A 5C1VA 1M63A 4H2FA 4IL1A 1W24A 3RL4A 3D03A 4LU9A 3H61A 4TUGA 1TCOA 2HYOA 3QFOA 1OIEA 1V73A 3RQZA 4ORAA 3RL5A 3IB8A 3H69A 3DSCA 4IYPC 4I5LC 3H62B 3K7VC 1XM7A 4LTYA 4Q7FA 2IE4C 3H66A 1FJMA 3QFMA 3PSNA 4MOYA 1HO5A 4HD0A 2QFPA 2Z06A 4O43A 4ORCA 3E0JA 5B8IA 4ORBA 1IT6A 3IVDA 2IE3C 3FLOA 4FBKA 2DFJA 2HYPA 2O8GA 3QFKA 2R17A 4XPNA 1G5BA 1KBPA 1Z2XA 2DXLA 2BCDA 2QFRA 3EGGA 3PSOA 2YEQA 1OI8A 4JA7A 4FCXA 4JA9A 5JPFA 1S3NA 2NYMC 4H2GA 3E7AA 3ZTVA 2WDCA 1S3LA 4B2OA 3AUZA 3T1IA 4UT3A 2O8AA 3E7BA 2USHA 4MP0A 4G9JA 5GTUA 5IOHA 1WAO1 2CV9A 2JOGA 3DSDA 2Z1AA 5JJTA 5HPEA 4WWLA 1XZWA 4M0VA 4H1SA 3QG5C 4ZX2A 2YVTA 4NZVA 3GVEA 2BDXA 1JK7A 2DXNA 3IB7A 4UT3B 4J6OA 4LACC 1QFCA 2A22A 1QHWA 4TUIA 4ZVZA 1S8EA 3JYFA 4DSYA 3TGHA 4H1YP 3HVQA 3K7WC 1S3MA 3KBPA 5JPEA 1Z2WA 3EGHA 4V0VA 3H63A 1II7A 1S95A 4FBWA 3C9FA 4KBPA 2XMOA 4UWQA 1UTEA 3THOB 4UT2A 4I5NC 1UF3A 2HY1A 2ZO9B 3FGAC 3H60A 3N5UA 2BQ8X 2GJUA 2Z72A 3CK2A 4O5GA 2WDDA 1T70A 2NYLC 2IAEC 5EQVA 2NPPC 4DHLA 1S70A 3AV0A 1U32A 4H2IA 4MOVA 4V0WA 4F0ZA 2AHDA 2NXFA 4FBQA 1OIDA 3DW8C 1NNWA 5INBA 3IVEA 1T71A 1USHA 2WDEA 3THNA 3H64A 3QFNA 3ZU0A 3ICFA
chains in the Genus database with same CATH topology
2WDFA 3P71C 3RL3A 2KKNA 3H68A 4O4KA 4DT2A 4YKEA 2P6BA 4V0XA 2QJCA 4H2BA 3H67A 5J28A 1SU1A 4OR9A 4KKZA 5DNYA 4O24A 5F3WA 2ZOAA 1HPUA 2Q8UA 3V4YA 1WARA 2ZBMA 3C5WC 1AUIA 3LL8A 1MF8A 1HP1A 5C1VA 1M63A 4H2FA 4IL1A 1W24A 3RL4A 3D03A 4LU9A 3H61A 4TUGA 1TCOA 2HYOA 3QFOA 1OIEA 1V73A 3RQZA 4ORAA 3RL5A 3IB8A 3H69A 3DSCA 4IYPC 4I5LC 3H62B 3K7VC 1XM7A 4LTYA 4Q7FA 2IE4C 3H66A 1FJMA 3QFMA 3PSNA 4MOYA 1HO5A 4HD0A 2QFPA 2Z06A 4O43A 4ORCA 3E0JA 5B8IA 4ORBA 1IT6A 3IVDA 2IE3C 3FLOA 4FBKA 2DFJA 2HYPA 2O8GA 3QFKA 2R17A 4XPNA 1G5BA 1KBPA 1Z2XA 2DXLA 2BCDA 2QFRA 3EGGA 3PSOA 2YEQA 1OI8A 4JA7A 4FCXA 4JA9A 5JPFA 1S3NA 2NYMC 4H2GA 3E7AA 3ZTVA 2WDCA 1S3LA 4B2OA 3AUZA 3T1IA 4UT3A 2O8AA 3E7BA 2USHA 4MP0A 4G9JA 5GTUA 5IOHA 1WAO1 2CV9A 2JOGA 3DSDA 2Z1AA 5JJTA 5HPEA 4WWLA 1XZWA 4M0VA 4H1SA 3QG5C 4ZX2A 2YVTA 4NZVA 3GVEA 2BDXA 1JK7A 2DXNA 3IB7A 4UT3B 4J6OA 4LACC 1QFCA 2A22A 1QHWA 4TUIA 4ZVZA 1S8EA 3JYFA 4DSYA 3TGHA 4H1YP 3HVQA 3K7WC 1S3MA 3KBPA 5JPEA 1Z2WA 3EGHA 4V0VA 3H63A 1II7A 1S95A 4FBWA 3C9FA 4KBPA 2XMOA 4UWQA 1UTEA 3THOB 4UT2A 4I5NC 1UF3A 2HY1A 2ZO9B 3FGAC 3H60A 3N5UA 2BQ8X 2GJUA 2Z72A 3CK2A 4O5GA 2WDDA 1T70A 2NYLC 2IAEC 5EQVA 2NPPC 4DHLA 1S70A 3AV0A 1U32A 4H2IA 4MOVA 4V0WA 4F0ZA 2AHDA 2NXFA 4FBQA 1OIDA 3DW8C 1NNWA 5INBA 3IVEA 1T71A 1USHA 2WDEA 3THNA 3H64A 3QFNA 3ZU0A 3ICFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WDF A;  3P71 C;  3RL3 A;  2KKN A;  3H68 A;  4O4K A;  4DT2 A;  4YKE A;  2P6B A;  4V0X A;  2QJC A;  4H2B A;  3H67 A;  5J28 A;  1SU1 A;  4OR9 A;  4KKZ A;  5DNY A;  4O24 A;  5F3W A;  1HPU A;  2Q8U A;  3V4Y A;  1WAR A;  2ZBM A;  3C5W C;  1AUI A;  3LL8 A;  1MF8 A;  1HP1 A;  5C1V A;  1M63 A;  4H2F A;  4IL1 A;  1W24 A;  3RL4 A;  4LU9 A;  3H61 A;  4TUG A;  1TCO A;  2HYO A;  3QFO A;  1OIE A;  1V73 A;  3RQZ A;  4ORA A;  3RL5 A;  3IB8 A;  3H69 A;  3DSC A;  4IYP C;  4I5L C;  3H62 B;  3K7V C;  1XM7 A;  4LTY A;  4Q7F A;  2IE4 C;  3H66 A;  1FJM A;  3QFM A;  3PSN A;  4MOY A;  1HO5 A;  4HD0 A;  2QFP A;  2Z06 A;  4O43 A;  4ORC A;  5B8I A;  4ORB A;  1IT6 A;  3IVD A;  2IE3 C;  4FBK A;  2DFJ A;  2HYP A;  2O8G A;  3QFK A;  2R17 A;  4XPN A;  1G5B A;  1KBP A;  1Z2X A;  2BCD A;  2QFR A;  3EGG A;  3PSO A;  1OI8 A;  4JA7 A;  4FCX A;  4JA9 A;  5JPF A;  1S3N A;  2NYM C;  4H2G A;  3E7A A;  3ZTV A;  2WDC A;  1S3L A;  4B2O A;  3AUZ A;  3T1I A;  4UT3 A;  2O8A A;  3E7B A;  2USH A;  4MP0 A;  4G9J A;  5GTU A;  5IOH A;  1WAO 1;  2CV9 A;  2JOG A;  3DSD A;  2Z1A A;  5JJT A;  5HPE A;  4WWL A;  1XZW A;  4M0V A;  4H1S A;  3QG5 C;  4ZX2 A;  2YVT A;  4NZV A;  3GVE A;  2BDX A;  1JK7 A;  3IB7 A;  4UT3 B;  4J6O A;  4LAC C;  1QFC A;  2A22 A;  1QHW A;  4TUI A;  4ZVZ A;  1S8E A;  3JYF A;  4DSY A;  3TGH A;  4H1Y P;  3HVQ A;  3K7W C;  1S3M A;  3KBP A;  5JPE A;  1Z2W A;  3EGH A;  4V0V A;  3H63 A;  1II7 A;  1S95 A;  4FBW A;  3C9F A;  4KBP A;  2XMO A;  4UWQ A;  1UTE A;  3THO B;  4UT2 A;  4I5N C;  1UF3 A;  2HY1 A;  3FGA C;  3H60 A;  3N5U A;  2BQ8 X;  2GJU A;  2Z72 A;  3CK2 A;  4O5G A;  2WDD A;  1T70 A;  2NYL C;  2IAE C;  5EQV A;  2NPP C;  4DHL A;  1S70 A;  3AV0 A;  1U32 A;  4H2I A;  4MOV A;  4V0W A;  4F0Z A;  2AHD A;  2NXF A;  4FBQ A;  1OID A;  3DW8 C;  1NNW A;  5INB A;  3IVE A;  1T71 A;  1USH A;  2WDE A;  3THN A;  3H64 A;  3QFN A;  3ZU0 A;  3ICF A; 
#chains in the Genus database with same CATH topology
 2WDF A;  3P71 C;  3RL3 A;  2KKN A;  3H68 A;  4O4K A;  4DT2 A;  4YKE A;  2P6B A;  4V0X A;  2QJC A;  4H2B A;  3H67 A;  5J28 A;  1SU1 A;  4OR9 A;  4KKZ A;  5DNY A;  4O24 A;  5F3W A;  2ZOA A;  1HPU A;  2Q8U A;  3V4Y A;  1WAR A;  2ZBM A;  3C5W C;  1AUI A;  3LL8 A;  1MF8 A;  1HP1 A;  5C1V A;  1M63 A;  4H2F A;  4IL1 A;  1W24 A;  3RL4 A;  3D03 A;  4LU9 A;  3H61 A;  4TUG A;  1TCO A;  2HYO A;  3QFO A;  1OIE A;  1V73 A;  3RQZ A;  4ORA A;  3RL5 A;  3IB8 A;  3H69 A;  3DSC A;  4IYP C;  4I5L C;  3H62 B;  3K7V C;  1XM7 A;  4LTY A;  4Q7F A;  2IE4 C;  3H66 A;  1FJM A;  3QFM A;  3PSN A;  4MOY A;  1HO5 A;  4HD0 A;  2QFP A;  2Z06 A;  4O43 A;  4ORC A;  3E0J A;  5B8I A;  4ORB A;  1IT6 A;  3IVD A;  2IE3 C;  3FLO A;  4FBK A;  2DFJ A;  2HYP A;  2O8G A;  3QFK A;  2R17 A;  4XPN A;  1G5B A;  1KBP A;  1Z2X A;  2DXL A;  2BCD A;  2QFR A;  3EGG A;  3PSO A;  2YEQ A;  1OI8 A;  4JA7 A;  4FCX A;  4JA9 A;  5JPF A;  1S3N A;  2NYM C;  4H2G A;  3E7A A;  3ZTV A;  2WDC A;  1S3L A;  4B2O A;  3AUZ A;  3T1I A;  4UT3 A;  2O8A A;  3E7B A;  2USH A;  4MP0 A;  4G9J A;  5GTU A;  5IOH A;  1WAO 1;  2CV9 A;  2JOG A;  3DSD A;  2Z1A A;  5JJT A;  5HPE A;  4WWL A;  1XZW A;  4M0V A;  4H1S A;  3QG5 C;  4ZX2 A;  2YVT A;  4NZV A;  3GVE A;  2BDX A;  1JK7 A;  2DXN A;  3IB7 A;  4UT3 B;  4J6O A;  4LAC C;  1QFC A;  2A22 A;  1QHW A;  4TUI A;  4ZVZ A;  1S8E A;  3JYF A;  4DSY A;  3TGH A;  4H1Y P;  3HVQ A;  3K7W C;  1S3M A;  3KBP A;  5JPE A;  1Z2W A;  3EGH A;  4V0V A;  3H63 A;  1II7 A;  1S95 A;  4FBW A;  3C9F A;  4KBP A;  2XMO A;  4UWQ A;  1UTE A;  3THO B;  4UT2 A;  4I5N C;  1UF3 A;  2HY1 A;  2ZO9 B;  3FGA C;  3H60 A;  3N5U A;  2BQ8 X;  2GJU A;  2Z72 A;  3CK2 A;  4O5G A;  2WDD A;  1T70 A;  2NYL C;  2IAE C;  5EQV A;  2NPP C;  4DHL A;  1S70 A;  3AV0 A;  1U32 A;  4H2I A;  4MOV A;  4V0W A;  4F0Z A;  2AHD A;  2NXF A;  4FBQ A;  1OID A;  3DW8 C;  1NNW A;  5INB A;  3IVE A;  1T71 A;  1USH A;  2WDE A;  3THN A;  3H64 A;  3QFN A;  3ZU0 A;  3ICF A; 
#chains in the Genus database with same CATH homology
 2WDF A;  3P71 C;  3RL3 A;  2KKN A;  3H68 A;  4O4K A;  4DT2 A;  4YKE A;  2P6B A;  4V0X A;  2QJC A;  4H2B A;  3H67 A;  5J28 A;  1SU1 A;  4OR9 A;  4KKZ A;  5DNY A;  4O24 A;  5F3W A;  2ZOA A;  1HPU A;  2Q8U A;  3V4Y A;  1WAR A;  2ZBM A;  3C5W C;  1AUI A;  3LL8 A;  1MF8 A;  1HP1 A;  5C1V A;  1M63 A;  4H2F A;  4IL1 A;  1W24 A;  3RL4 A;  3D03 A;  4LU9 A;  3H61 A;  4TUG A;  1TCO A;  2HYO A;  3QFO A;  1OIE A;  1V73 A;  3RQZ A;  4ORA A;  3RL5 A;  3IB8 A;  3H69 A;  3DSC A;  4IYP C;  4I5L C;  3H62 B;  3K7V C;  1XM7 A;  4LTY A;  4Q7F A;  2IE4 C;  3H66 A;  1FJM A;  3QFM A;  3PSN A;  4MOY A;  1HO5 A;  4HD0 A;  2QFP A;  2Z06 A;  4O43 A;  4ORC A;  3E0J A;  5B8I A;  4ORB A;  1IT6 A;  3IVD A;  2IE3 C;  3FLO A;  4FBK A;  2DFJ A;  2HYP A;  2O8G A;  3QFK A;  2R17 A;  4XPN A;  1G5B A;  1KBP A;  1Z2X A;  2DXL A;  2BCD A;  2QFR A;  3EGG A;  3PSO A;  2YEQ A;  1OI8 A;  4JA7 A;  4FCX A;  4JA9 A;  5JPF A;  1S3N A;  2NYM C;  4H2G A;  3E7A A;  3ZTV A;  2WDC A;  1S3L A;  4B2O A;  3AUZ A;  3T1I A;  4UT3 A;  2O8A A;  3E7B A;  2USH A;  4MP0 A;  4G9J A;  5GTU A;  5IOH A;  1WAO 1;  2CV9 A;  2JOG A;  3DSD A;  2Z1A A;  5JJT A;  5HPE A;  4WWL A;  1XZW A;  4M0V A;  4H1S A;  3QG5 C;  4ZX2 A;  2YVT A;  4NZV A;  3GVE A;  2BDX A;  1JK7 A;  2DXN A;  3IB7 A;  4UT3 B;  4J6O A;  4LAC C;  1QFC A;  2A22 A;  1QHW A;  4TUI A;  4ZVZ A;  1S8E A;  3JYF A;  4DSY A;  3TGH A;  4H1Y P;  3HVQ A;  3K7W C;  1S3M A;  3KBP A;  5JPE A;  1Z2W A;  3EGH A;  4V0V A;  3H63 A;  1II7 A;  1S95 A;  4FBW A;  3C9F A;  4KBP A;  2XMO A;  4UWQ A;  1UTE A;  3THO B;  4UT2 A;  4I5N C;  1UF3 A;  2HY1 A;  2ZO9 B;  3FGA C;  3H60 A;  3N5U A;  2BQ8 X;  2GJU A;  2Z72 A;  3CK2 A;  4O5G A;  2WDD A;  1T70 A;  2NYL C;  2IAE C;  5EQV A;  2NPP C;  4DHL A;  1S70 A;  3AV0 A;  1U32 A;  4H2I A;  4MOV A;  4V0W A;  4F0Z A;  2AHD A;  2NXF A;  4FBQ A;  1OID A;  3DW8 C;  1NNW A;  5INB A;  3IVE A;  1T71 A;  1USH A;  2WDE A;  3THN A;  3H64 A;  3QFN A;  3ZU0 A;  3ICF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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