1HR0D

Crystal structure of initiation factor if1 bound to the 30s ribosomal subunit
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVQENLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
publication title Crystal structure of an initiation factor bound to the 30S ribosomal subunit.
pubmed doi rcsb
source organism Escherichia coli
total genus 62
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2000-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 1hr0D01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1hr0D02
1N33D 2VQFD 5IWAD 4NXND 4JI8D 4DV7D 4B3TD 1HNWD 4JI1D 4DR4D 1J5ED 4X64D 1I94D 4X62D 4DR3D 4B3RD 1HR0D 4YY3D 3KBGA 1H3EA 4DV5D 2E5LD 4LGTA 2UXCD 1P9KA 4DR7D 4LF7D 4LFCD 4X65D 4DV4D 1KSVA 4DUYD 4OX9D 3OTOD 4JI5D 2UXDD 2K6PA 4AQYD 4DR1D 2KTLA 2JANA 4LF4D 4LF8D 2VQED 1FJGD 1DM9A 2HHHD 1C05A 1JH3A 4JI3D 1XMQD 1KSKA 2ISTA 4DUZD 1N36D 1HNXD 4DR6D 1XNRD 4GKJD 1KSLA 4LF9D 1N34D 4B3MD 4GKKD 4KHPD 3T1HD 4LF6D 2ZM6D 2UU9D 5BR8D 4LF5D 2UUAD 4LFAD 1IBMD 4DR5D 4JI0D 1FKAD 4JV5D 1XNQD 1HNZD 4OUDA 3HP7A 3T1YD 4JI7D 1C06A 4X66D 2UXBD 4YHHD 1H3FA 4NXMD 1N32D 4DV6D 1IBLD 1IBKD 5LMUD 4JI4D 4DV0D 4DV3D 2UUBD 4LFBD 5LMND 4JI2D 4K0KD 4JI6D 3DH3A 2F4VD 4DR2D 4DV1D 4DV2D 1VIOA 4JYAD 1XMOD 2UUCD 4B3SD
chains in the Genus database with same CATH superfamily
1N33D 5IT9E 2VQFD 5IWAD 4NXND 4JI8D 4DV7D 4W5VB 4B3TD 4II2A 1HNWD 4JI1D 4DR4D 1J5ED 4X64D 1I94D 4X62D 3ONHA 4DR3D 5LL6S 5FLXE 4B3RD 3FN1A 2L3NA 1HR0D 1Y8RB 2NVUB 3J81E 4YY3D 3KBGA 1H3EA 4DV5D 2E5LD 4LGTA 2LQ7A 2UXCD 1P9KA 1Y8QB 4DR7D 4LF7D 3JAME 4LFCD 3J80E 4X65D 3KYCB 4DV4D 1KSVA 4DUYD 1Y8XB 4OX9D 3OTOD 4JI5D 2UXDD 2K6PA 4AQYD 4DR1D 2KTLA 2JANA 5A2QE 5FQ2B 4LF4D 4LF8D 2VQED 1FJGD 1DM9A 2HHHD 1C05A 1JH3A 4JI3D 1XMQD 1KSKA 2ISTA 4DUZD 2ZTBA 1N36D 1HNXD 4DR6D 1XNRD 4GKJD 1KSLA 3CMMA 3KYDB 4LF9D 1N34D 4B3MD 4GKKD 4KHPD 3T1HD 4LF6D 2ZM6D 2UU9D 5BR8D 4LF5D 2UUAD 4LFAD 1IBMD 4DR5D 4JI0D 1FKAD 4NNJA 4JV5D 1XNQD 1HNZD 4OUDA 3HP7A 3T1YD 4JI7D 1C06A 3J7AF 4X66D 2UXBD 4YHHD 1H3FA 4NXMD 1N32D 4II3A 4DV6D 1IBLD 1IBKD 5LMUD 4JI4D 4DV0D 4DV3D 2UUBD 4LFBD 5KNLA 5LMND 4JI2D 4K0KD 4JI6D 3DH3A 2F4VD 4DR2D 4DV1D 4DV2D 1VIOA 4JYAD 3ONGA 1XMOD 2I1SA 2UUCD 4B3SD
chains in the Genus database with same CATH topology
1N33D 2VQFD 5IWAD 4NXND 4JI8D 4DV7D 4B3TD 1HNWD 4JI1D 4DR4D 1J5ED 4X64D 1I94D 4X62D 4DR3D 4B3RD 2L3NA 1HR0D 4YY3D 3KBGA 1H3EA 4DV5D 2E5LD 4LGTA 2UXCD 1P9KA 4DR7D 4LF7D 4LFCD 4X65D 4DV4D 1KSVA 4DUYD 4OX9D 3OTOD 4JI5D 2UXDD 2K6PA 4AQYD 4DR1D 2KTLA 2JANA 4LF4D 4LF8D 2VQED 1FJGD 1DM9A 2HHHD 1C05A 1JH3A 4JI3D 1XMQD 1KSKA 2ISTA 4DUZD 1N36D 1HNXD 4DR6D 1XNRD 4GKJD 1KSLA 4LF9D 1N34D 4B3MD 4GKKD 4KHPD 3T1HD 4LF6D 2ZM6D 2UU9D 5BR8D 4LF5D 2UUAD 4LFAD 1IBMD 4DR5D 4JI0D 1FKAD 4JV5D 1XNQD 1HNZD 4OUDA 3HP7A 3T1YD 4JI7D 1C06A 4X66D 2UXBD 4YHHD 1H3FA 4NXMD 1N32D 4DV6D 1IBLD 1IBKD 5LMUD 4JI4D 4DV0D 4DV3D 2UUBD 4LFBD 5LMND 4JI2D 4K0KD 4JI6D 3DH3A 2F4VD 4DR2D 4DV1D 4DV2D 1VIOA 4JYAD 1XMOD 2UUCD 4B3SD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N33 D;  2VQF D;  5IWA D;  4NXN D;  4JI8 D;  4DV7 D;  4B3T D;  1HNW D;  4JI1 D;  4DR4 D;  1J5E D;  4X64 D;  1I94 D;  4X62 D;  4DR3 D;  4B3R D;  1HR0 D;  4YY3 D;  3KBG A;  1H3E A;  4DV5 D;  2E5L D;  4LGT A;  2UXC D;  1P9K A;  4DR7 D;  4LF7 D;  4LFC D;  4X65 D;  4DV4 D;  1KSV A;  4DUY D;  4OX9 D;  3OTO D;  4JI5 D;  2UXD D;  2K6P A;  4AQY D;  4DR1 D;  2KTL A;  2JAN A;  4LF4 D;  4LF8 D;  2VQE D;  1FJG D;  1DM9 A;  2HHH D;  1C05 A;  1JH3 A;  4JI3 D;  1XMQ D;  1KSK A;  2IST A;  4DUZ D;  1N36 D;  1HNX D;  4DR6 D;  1XNR D;  4GKJ D;  1KSL A;  4LF9 D;  1N34 D;  4B3M D;  4GKK D;  4KHP D;  3T1H D;  4LF6 D;  2ZM6 D;  2UU9 D;  5BR8 D;  4LF5 D;  2UUA D;  4LFA D;  1IBM D;  4DR5 D;  4JI0 D;  1FKA D;  4JV5 D;  1XNQ D;  1HNZ D;  4OUD A;  3HP7 A;  3T1Y D;  4JI7 D;  1C06 A;  4X66 D;  2UXB D;  4YHH D;  1H3F A;  4NXM D;  1N32 D;  4DV6 D;  1IBL D;  1IBK D;  5LMU D;  4JI4 D;  4DV0 D;  4DV3 D;  2UUB D;  4LFB D;  5LMN D;  4JI2 D;  4K0K D;  4JI6 D;  3DH3 A;  2F4V D;  4DR2 D;  4DV1 D;  4DV2 D;  1VIO A;  4JYA D;  1XMO D;  2UUC D;  4B3S D; 
#chains in the Genus database with same CATH topology
 1N33 D;  5IT9 E;  2VQF D;  5IWA D;  4NXN D;  4JI8 D;  4DV7 D;  4W5V B;  4B3T D;  4II2 A;  1HNW D;  4JI1 D;  4DR4 D;  1J5E D;  4X64 D;  1I94 D;  4X62 D;  3ONH A;  4DR3 D;  5LL6 S;  5FLX E;  4B3R D;  3FN1 A;  2L3N A;  1HR0 D;  1Y8R B;  2NVU B;  3J81 E;  4YY3 D;  3KBG A;  1H3E A;  4DV5 D;  2E5L D;  4LGT A;  2LQ7 A;  2UXC D;  1P9K A;  1Y8Q B;  4DR7 D;  4LF7 D;  3JAM E;  4LFC D;  3J80 E;  4X65 D;  3KYC B;  4DV4 D;  1KSV A;  4DUY D;  1Y8X B;  4OX9 D;  3OTO D;  4JI5 D;  2UXD D;  2K6P A;  4AQY D;  4DR1 D;  2KTL A;  2JAN A;  5A2Q E;  5FQ2 B;  4LF4 D;  4LF8 D;  2VQE D;  1FJG D;  1DM9 A;  2HHH D;  1C05 A;  1JH3 A;  4JI3 D;  1XMQ D;  1KSK A;  2IST A;  4DUZ D;  2ZTB A;  1N36 D;  1HNX D;  4DR6 D;  1XNR D;  4GKJ D;  1KSL A;  3CMM A;  3KYD B;  4LF9 D;  1N34 D;  4B3M D;  4GKK D;  4KHP D;  3T1H D;  4LF6 D;  2ZM6 D;  2UU9 D;  5BR8 D;  4LF5 D;  2UUA D;  4LFA D;  1IBM D;  4DR5 D;  4JI0 D;  1FKA D;  4NNJ A;  4JV5 D;  1XNQ D;  1HNZ D;  4OUD A;  3HP7 A;  3T1Y D;  4JI7 D;  1C06 A;  3J7A F;  4X66 D;  2UXB D;  4YHH D;  1H3F A;  4NXM D;  1N32 D;  4II3 A;  4DV6 D;  1IBL D;  1IBK D;  5LMU D;  4JI4 D;  4DV0 D;  4DV3 D;  2UUB D;  4LFB D;  5KNL A;  5LMN D;  4JI2 D;  4K0K D;  4JI6 D;  3DH3 A;  2F4V D;  4DR2 D;  4DV1 D;  4DV2 D;  1VIO A;  4JYA D;  3ONG A;  1XMO D;  2I1S A;  2UUC D;  4B3S D; 
#chains in the Genus database with same CATH homology
 1N33 D;  2VQF D;  5IWA D;  4NXN D;  4JI8 D;  4DV7 D;  4B3T D;  1HNW D;  4JI1 D;  4DR4 D;  1J5E D;  4X64 D;  1I94 D;  4X62 D;  4DR3 D;  4B3R D;  2L3N A;  1HR0 D;  4YY3 D;  3KBG A;  1H3E A;  4DV5 D;  2E5L D;  4LGT A;  2UXC D;  1P9K A;  4DR7 D;  4LF7 D;  4LFC D;  4X65 D;  4DV4 D;  1KSV A;  4DUY D;  4OX9 D;  3OTO D;  4JI5 D;  2UXD D;  2K6P A;  4AQY D;  4DR1 D;  2KTL A;  2JAN A;  4LF4 D;  4LF8 D;  2VQE D;  1FJG D;  1DM9 A;  2HHH D;  1C05 A;  1JH3 A;  4JI3 D;  1XMQ D;  1KSK A;  2IST A;  4DUZ D;  1N36 D;  1HNX D;  4DR6 D;  1XNR D;  4GKJ D;  1KSL A;  4LF9 D;  1N34 D;  4B3M D;  4GKK D;  4KHP D;  3T1H D;  4LF6 D;  2ZM6 D;  2UU9 D;  5BR8 D;  4LF5 D;  2UUA D;  4LFA D;  1IBM D;  4DR5 D;  4JI0 D;  1FKA D;  4JV5 D;  1XNQ D;  1HNZ D;  4OUD A;  3HP7 A;  3T1Y D;  4JI7 D;  1C06 A;  4X66 D;  2UXB D;  4YHH D;  1H3F A;  4NXM D;  1N32 D;  4DV6 D;  1IBL D;  1IBK D;  5LMU D;  4JI4 D;  4DV0 D;  4DV3 D;  2UUB D;  4LFB D;  5LMN D;  4JI2 D;  4K0K D;  4JI6 D;  3DH3 A;  2F4V D;  4DR2 D;  4DV1 D;  4DV2 D;  1VIO A;  4JYA D;  1XMO D;  2UUC D;  4B3S D; 
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similar chains in the pdb database (?% sequence similarity)

 
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