1HV2A

Solution structure of yeast elongin c in complex with a von hippel-lindau peptide
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
99
structure length
99
Chain Sequence
MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords ELONGIN C
publication title Solution structure and dynamics of yeast elongin C in complex with a von Hippel-Lindau peptide.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 37
structure length 99
sequence length 99
ec nomenclature
pdb deposition date 2001-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 1hv2A00
3HQIA 4I6JC 4CRHA 1DSXA 5LLIB 4W9HH 4UIJA 4W9FB 3ZTDB 2P1NA 1T1DA 1A68A 4U77A 4CXTA 5DADA 4W9KB 4APFA 2C9WC 3OGLA 3HU6A 4W9IB 5BXHA 3LNMB 4W9CB 5JH5B 4BKSB 1P22B 1R29A 3V7DA 2NZ0B 3MKSA 4W9HB 1QDWA 2FNJC 4BGCA 1S1GA 4AWJB 4U2MA 3OHUA 2JZ3C 1QDVA 5EUPA 3KVTA 5A6RA 2VKPA 2P1PA 4J8ZA 5BXDA 3GA1A 2OVRA 4BKTB 3C6PA 3HTMA 1LQBB 2Z8HA 3B84A 3OGMA 2A79B 2R9RB 3LUTB 3E4UA 4AP2A 3ZNGB 1NEXA 4B9KB 3M5BA 3ZTCB 4W9DB 4WQOC 4U2NA 4JTAB 3ZKJB 1VCBB 1FQVB 3HVEA 2I2RA 3ZRCB 3ZUNB 3HVEB 3C6NA 2OVQA 2PPIA 3C6OA 5H7HA 2YY9A 4W9JB 4UYIA 4W9LB 4JTDB 4ZOUA 4JTCB 4N9F5 4EOZA 3FKCA 1FS2B 3I3NA 1EODA 3OHVA 5DAFA 5BXBA 1R2BA 3M52A 3DCGB 4CXJA 2P1QA 2E31B 4HXIA 1EXBE 2MA9C 5H7GA 5FTAA 3ZRFB 1EOEA 2E32B 2P1MA 5IBKA 3DRZA 4W9GB 2IHCA 2ASTA 1R28A 3M4TA 2IF5A 4AJYC 4B95B 1NN7A 1LDKD 2VPKA 3BIMA 3OGKA 4CP3A 5HZGC 4CXIA 1EOFA 1LM8C 1FS1B 4W9EB 4JGHC 3WSOB 2NN2A 2ASSA 4B9KE 2Q81A 5A15A 2IZVC 1HV2A 1CS3A 3M8VA 2P1OA 1BUOA 2OVPA 5BO4C 5HYWB 3LBZA 3L2OA
chains in the Genus database with same CATH superfamily
3HQIA 4I6JC 4CRHA 1DSXA 5LLIB 4W9HH 4UIJA 4W9FB 3ZTDB 2P1NA 1T1DA 1A68A 4U77A 4CXTA 5DADA 4W9KB 4APFA 2C9WC 3OGLA 3HU6A 4W9IB 5BXHA 3LNMB 4W9CB 5JH5B 4BKSB 1P22B 1R29A 3V7DA 2NZ0B 3MKSA 4W9HB 1QDWA 2FNJC 4BGCA 1S1GA 4AWJB 4U2MA 3OHUA 2JZ3C 1QDVA 5EUPA 3KVTA 5A6RA 2VKPA 2P1PA 4J8ZA 5BXDA 3GA1A 4ZGCA 3DRXA 2OVRA 4BKTB 3HTMA 3C6PA 1LQBB 2Z8HA 3B84A 3OGMA 2A79B 2R9RB 3LUTB 3E4UA 4AP2A 3ZNGB 1NEXA 4B9KB 3M5BA 3ZTCB 4W9DB 4WQOC 4U2NA 4JTAB 3ZKJB 1VCBB 1FQVB 3HVEA 2I2RA 3ZRCB 3ZUNB 3HVEB 3C6NA 2OVQA 2PPIA 3C6OA 5H7HA 2YY9A 4W9JB 4UYIA 4W9LB 4JTDB 4YY8A 4ZOUA 4JTCB 4N9F5 4EOZA 3FKCA 1FS2B 3I3NA 1EODA 3OHVA 5DAFA 5BXBA 1R2BA 3M52A 3DCGB 4CXJA 2P1QA 2E31B 4HXIA 1EXBE 2MA9C 5H7GA 5FTAA 3DRYA 3ZRFB 1EOEA 2E32B 2P1MA 5IBKA 3DRZA 4W9GB 2IHCA 2ASTA 1R28A 3M4TA 2IF5A 4AJYC 4B95B 1NN7A 1LDKD 2VPKA 3BIMA 3OGKA 4CP3A 5HZGC 4CXIA 1EOFA 1LM8C 1FS1B 4W9EB 4JGHC 3WSOB 2NN2A 2ASSA 4B9KE 2Q81A 5A15A 2IZVC 1HV2A 1CS3A 3M8VA 2P1OA 1BUOA 2OVPA 5BO4C 5HYWB 3LBZA 3L2OA
chains in the Genus database with same CATH topology
3HQIA 4I6JC 4CRHA 1DSXA 5LLIB 4W9HH 4UIJA 4W9FB 3ZTDB 2P1NA 1T1DA 1A68A 4U77A 4CXTA 5DADA 4W9KB 4APFA 2C9WC 3OGLA 3HU6A 4W9IB 5BXHA 3LNMB 4W9CB 5JH5B 4BKSB 1P22B 1R29A 3V7DA 2NZ0B 3MKSA 4W9HB 1QDWA 2FNJC 4BGCA 1S1GA 4AWJB 4U2MA 3OHUA 2JZ3C 1QDVA 5EUPA 3KVTA 5A6RA 2VKPA 2P1PA 4J8ZA 5BXDA 3GA1A 4ZGCA 3DRXA 2OVRA 4BKTB 3HTMA 3C6PA 1LQBB 2Z8HA 3B84A 3OGMA 2A79B 2R9RB 3LUTB 3E4UA 4AP2A 3ZNGB 1NEXA 4B9KB 3M5BA 3ZTCB 4W9DB 4WQOC 4U2NA 4JTAB 3ZKJB 1VCBB 1FQVB 3HVEA 2I2RA 3ZRCB 3ZUNB 3HVEB 3C6NA 2OVQA 2PPIA 3C6OA 5H7HA 2YY9A 4W9JB 4UYIA 4W9LB 4JTDB 4YY8A 4ZOUA 4JTCB 4N9F5 4EOZA 3FKCA 1FS2B 3I3NA 1EODA 3OHVA 5DAFA 5BXBA 1R2BA 3M52A 3DCGB 4CXJA 2P1QA 2E31B 4HXIA 1EXBE 2MA9C 5H7GA 5FTAA 3DRYA 3ZRFB 1EOEA 2E32B 2P1MA 5IBKA 3DRZA 4W9GB 2IHCA 2ASTA 1R28A 3M4TA 2IF5A 4AJYC 4B95B 1NN7A 1LDKD 2VPKA 3BIMA 3OGKA 4CP3A 5HZGC 4CXIA 1EOFA 1LM8C 1FS1B 4W9EB 4JGHC 3WSOB 2NN2A 2ASSA 4B9KE 2Q81A 5A15A 2IZVC 1HV2A 1CS3A 3M8VA 2P1OA 1BUOA 2OVPA 5BO4C 5HYWB 3LBZA 3L2OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HQI A;  4I6J C;  4CRH A;  1DSX A;  5LLI B;  4W9H H;  4UIJ A;  4W9F B;  3ZTD B;  2P1N A;  1T1D A;  1A68 A;  4U77 A;  4CXT A;  5DAD A;  4W9K B;  4APF A;  2C9W C;  3OGL A;  3HU6 A;  4W9I B;  5BXH A;  3LNM B;  4W9C B;  5JH5 B;  4BKS B;  1P22 B;  1R29 A;  3V7D A;  2NZ0 B;  3MKS A;  4W9H B;  1QDW A;  2FNJ C;  4BGC A;  1S1G A;  4AWJ B;  4U2M A;  3OHU A;  2JZ3 C;  1QDV A;  5EUP A;  3KVT A;  5A6R A;  2VKP A;  2P1P A;  4J8Z A;  5BXD A;  3GA1 A;  2OVR A;  4BKT B;  3C6P A;  3HTM A;  1LQB B;  2Z8H A;  3B84 A;  3OGM A;  2A79 B;  2R9R B;  3LUT B;  3E4U A;  4AP2 A;  3ZNG B;  1NEX A;  4B9K B;  3M5B A;  3ZTC B;  4W9D B;  4WQO C;  4U2N A;  4JTA B;  3ZKJ B;  1VCB B;  1FQV B;  3HVE A;  2I2R A;  3ZRC B;  3ZUN B;  3HVE B;  3C6N A;  2OVQ A;  2PPI A;  3C6O A;  5H7H A;  2YY9 A;  4W9J B;  4UYI A;  4W9L B;  4JTD B;  4ZOU A;  4JTC B;  4N9F 5;  4EOZ A;  3FKC A;  1FS2 B;  3I3N A;  1EOD A;  3OHV A;  5DAF A;  5BXB A;  1R2B A;  3M52 A;  3DCG B;  4CXJ A;  2P1Q A;  2E31 B;  4HXI A;  1EXB E;  2MA9 C;  5H7G A;  5FTA A;  3ZRF B;  1EOE A;  2E32 B;  2P1M A;  5IBK A;  3DRZ A;  4W9G B;  2IHC A;  2AST A;  1R28 A;  3M4T A;  2IF5 A;  4AJY C;  4B95 B;  1NN7 A;  1LDK D;  2VPK A;  3BIM A;  3OGK A;  4CP3 A;  5HZG C;  4CXI A;  1EOF A;  1LM8 C;  1FS1 B;  4W9E B;  4JGH C;  3WSO B;  2NN2 A;  2ASS A;  4B9K E;  2Q81 A;  5A15 A;  2IZV C;  1HV2 A;  1CS3 A;  3M8V A;  2P1O A;  1BUO A;  2OVP A;  5BO4 C;  5HYW B;  3LBZ A;  3L2O A; 
#chains in the Genus database with same CATH topology
 3HQI A;  4I6J C;  4CRH A;  1DSX A;  5LLI B;  4W9H H;  4UIJ A;  4W9F B;  3ZTD B;  2P1N A;  1T1D A;  1A68 A;  4U77 A;  4CXT A;  5DAD A;  4W9K B;  4APF A;  2C9W C;  3OGL A;  3HU6 A;  4W9I B;  5BXH A;  3LNM B;  4W9C B;  5JH5 B;  4BKS B;  1P22 B;  1R29 A;  3V7D A;  2NZ0 B;  3MKS A;  4W9H B;  1QDW A;  2FNJ C;  4BGC A;  1S1G A;  4AWJ B;  4U2M A;  3OHU A;  2JZ3 C;  1QDV A;  5EUP A;  3KVT A;  5A6R A;  2VKP A;  2P1P A;  4J8Z A;  5BXD A;  3GA1 A;  4ZGC A;  3DRX A;  2OVR A;  4BKT B;  3HTM A;  3C6P A;  1LQB B;  2Z8H A;  3B84 A;  3OGM A;  2A79 B;  2R9R B;  3LUT B;  3E4U A;  4AP2 A;  3ZNG B;  1NEX A;  4B9K B;  3M5B A;  3ZTC B;  4W9D B;  4WQO C;  4U2N A;  4JTA B;  3ZKJ B;  1VCB B;  1FQV B;  3HVE A;  2I2R A;  3ZRC B;  3ZUN B;  3HVE B;  3C6N A;  2OVQ A;  2PPI A;  3C6O A;  5H7H A;  2YY9 A;  4W9J B;  4UYI A;  4W9L B;  4JTD B;  4YY8 A;  4ZOU A;  4JTC B;  4N9F 5;  4EOZ A;  3FKC A;  1FS2 B;  3I3N A;  1EOD A;  3OHV A;  5DAF A;  5BXB A;  1R2B A;  3M52 A;  3DCG B;  4CXJ A;  2P1Q A;  2E31 B;  4HXI A;  1EXB E;  2MA9 C;  5H7G A;  5FTA A;  3DRY A;  3ZRF B;  1EOE A;  2E32 B;  2P1M A;  5IBK A;  3DRZ A;  4W9G B;  2IHC A;  2AST A;  1R28 A;  3M4T A;  2IF5 A;  4AJY C;  4B95 B;  1NN7 A;  1LDK D;  2VPK A;  3BIM A;  3OGK A;  4CP3 A;  5HZG C;  4CXI A;  1EOF A;  1LM8 C;  1FS1 B;  4W9E B;  4JGH C;  3WSO B;  2NN2 A;  2ASS A;  4B9K E;  2Q81 A;  5A15 A;  2IZV C;  1HV2 A;  1CS3 A;  3M8V A;  2P1O A;  1BUO A;  2OVP A;  5BO4 C;  5HYW B;  3LBZ A;  3L2O A; 
#chains in the Genus database with same CATH homology
 3HQI A;  4I6J C;  4CRH A;  1DSX A;  5LLI B;  4W9H H;  4UIJ A;  4W9F B;  3ZTD B;  2P1N A;  1T1D A;  1A68 A;  4U77 A;  4CXT A;  5DAD A;  4W9K B;  4APF A;  2C9W C;  3OGL A;  3HU6 A;  4W9I B;  5BXH A;  3LNM B;  4W9C B;  5JH5 B;  4BKS B;  1P22 B;  1R29 A;  3V7D A;  2NZ0 B;  3MKS A;  4W9H B;  1QDW A;  2FNJ C;  4BGC A;  1S1G A;  4AWJ B;  4U2M A;  3OHU A;  2JZ3 C;  1QDV A;  5EUP A;  3KVT A;  5A6R A;  2VKP A;  2P1P A;  4J8Z A;  5BXD A;  3GA1 A;  4ZGC A;  3DRX A;  2OVR A;  4BKT B;  3HTM A;  3C6P A;  1LQB B;  2Z8H A;  3B84 A;  3OGM A;  2A79 B;  2R9R B;  3LUT B;  3E4U A;  4AP2 A;  3ZNG B;  1NEX A;  4B9K B;  3M5B A;  3ZTC B;  4W9D B;  4WQO C;  4U2N A;  4JTA B;  3ZKJ B;  1VCB B;  1FQV B;  3HVE A;  2I2R A;  3ZRC B;  3ZUN B;  3HVE B;  3C6N A;  2OVQ A;  2PPI A;  3C6O A;  5H7H A;  2YY9 A;  4W9J B;  4UYI A;  4W9L B;  4JTD B;  4YY8 A;  4ZOU A;  4JTC B;  4N9F 5;  4EOZ A;  3FKC A;  1FS2 B;  3I3N A;  1EOD A;  3OHV A;  5DAF A;  5BXB A;  1R2B A;  3M52 A;  3DCG B;  4CXJ A;  2P1Q A;  2E31 B;  4HXI A;  1EXB E;  2MA9 C;  5H7G A;  5FTA A;  3DRY A;  3ZRF B;  1EOE A;  2E32 B;  2P1M A;  5IBK A;  3DRZ A;  4W9G B;  2IHC A;  2AST A;  1R28 A;  3M4T A;  2IF5 A;  4AJY C;  4B95 B;  1NN7 A;  1LDK D;  2VPK A;  3BIM A;  3OGK A;  4CP3 A;  5HZG C;  4CXI A;  1EOF A;  1LM8 C;  1FS1 B;  4W9E B;  4JGH C;  3WSO B;  2NN2 A;  2ASS A;  4B9K E;  2Q81 A;  5A15 A;  2IZV C;  1HV2 A;  1CS3 A;  3M8V A;  2P1O A;  1BUO A;  2OVP A;  5BO4 C;  5HYW B;  3LBZ A;  3L2O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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