1HVGA

Structural and electrophysiological analysis of annexin v mutants. mutagenesis of human annexin v, an in vitro voltage-gated calcium channel, provides information about the structural features of the ion pathway, the voltage sensor and the ion selectivity filter
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
313
structure length
313
Chain Sequence
VLRGTVTDFPGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLLDDLKSELTGKFQKLIVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDAGIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRKVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Calcium/phospholipid binding
molecule keywords ANNEXIN V
publication title Structural and electrophysiological analysis of annexin V mutants. Mutagenesis of human annexin V, an in vitro voltage-gated calcium channel, provides information about the structural features of the ion pathway, the voltage sensor and the ion selectivity filter
pubmed doi rcsb
source organism Homo sapiens
total genus 116
structure length 313
sequence length 313
ec nomenclature
pdb deposition date 1994-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hvgA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hvgA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hvgA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hvgA03
2ZHJA 4MDUA 1BC3A 2H0KA 2IE6A 2ZHIA 1BCZA 1ANNA 1SAVA 1N44A 1AVCA 1DM5A 4EVHA 1HVDA 2H0LA 2RANA 2XO2A 1BC0A 1YJ0A 1HM6A 1W45A 1AVHA 2H0MA 1BCYA 1HVGA 3BRXA 4MDVA 1AVRA 2XO3A 1W7BA 1YIIA 1HVFA 1AOWA 1I4AA 1A8BA 1ANWA 1M9IA 1W3WA 2IICA 1DK5A 4X9PA 2Q4CA 4HREA 1HVEA 1A8AA 1ANXA 1G5NA 1XJLA 1AEIA 2HYUA 2II2A 1N00A 2IE7A 1N41A 1AIIA 1ALAA 1BC1A 1N42A 1BO9A 1MCXA 2HYWA 1YCNA 1HAKA 2ZOCA 4EVFA 2HYVA 1AXNA 1BCWA
chains in the Genus database with same CATH superfamily
4MDUA 3SOHB 2IE6A 2ZHIA 1XSZA 4EVHA 1QC7A 2RANA 2XO2A 3ABQA 1YJ0A 3AO0A 1W7BA 1AOWA 4D7QA 2R09A 1DK5A 4X9PA 3SWVA 1HVEA 1A8AA 1ANXA 1XJLA 1Q8DA 1KU1A 1R4AE 2HYWA 1HAKA 1AXNA 2H0KA 1R8SE 2K6XA 1ANNA 3USYA 2QEZA 2HSNA 1HM6A 3ABRA 2VXGA 4KN7X 3ANYA 1I4AA 1W3WA 4HREA 1G5NA 3L8NA 1RE0B 1BC9A 1N42A 1BO9A 4JK1X 2ZOCA 4EVFA 2ZHJA 1BCZA 4C0AA 1LKVX 1N44A 1R8ME 1HVDA 3ABOA 3LTLA 2H0LA 4OIYA 1W45A 1PBVA 2H0MA 1BCYA 4KN4X 1AVRA 4Z21A 1C1KA 1A8BA 1ANWA 1M9IA 4JXHA 1XT0B 2Q4CA 3TW5A 1N00A 1N41A 1AIIA 1BC1A 2R0DA 1HVFA 1BC3A 4D7RA 1UPTB 3ABSA 1SAVA 4C7PA 1AVCA 1DM5A 4KMUX 1BC0A 4Q2SA 1S9DE 1AVHA 3AJCA 3BRXA 1HVGA 4JMOA 4JWLA 4MDVA 2XO3A 4FHRB 1YIIA 4A4PA 1YGMA 2IICA 4JMIA 2II2A 4FQ0C 2HYUA 1AEIA 2IE7A 1ALAA 1R8QE 3USWA 1MCXA 4L5MA 1YCNA 2HYVA 2OY9A 3HJLA 1BCWA
chains in the Genus database with same CATH topology
2ZHJA 4MDUA 1BC3A 2H0KA 2IE6A 2ZHIA 1BCZA 1ANNA 1SAVA 1N44A 1AVCA 1DM5A 4EVHA 1HVDA 2H0LA 2RANA 2XO2A 1BC0A 1YJ0A 1HM6A 1W45A 1AVHA 2H0MA 1BCYA 1HVGA 3BRXA 4MDVA 1AVRA 2XO3A 1W7BA 1YIIA 1HVFA 1AOWA 1I4AA 1A8BA 1ANWA 1M9IA 1W3WA 2IICA 1DK5A 4X9PA 2Q4CA 4HREA 1HVEA 1A8AA 1ANXA 1G5NA 1XJLA 1AEIA 2HYUA 2II2A 1N00A 2IE7A 1N41A 1AIIA 1ALAA 1BC1A 1N42A 1BO9A 1MCXA 2HYWA 1YCNA 1HAKA 2ZOCA 4EVFA 2HYVA 1AXNA 1BCWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZHJ A;  4MDU A;  1BC3 A;  2H0K A;  2IE6 A;  2ZHI A;  1BCZ A;  1ANN A;  1SAV A;  1N44 A;  1AVC A;  1DM5 A;  4EVH A;  1HVD A;  2H0L A;  2RAN A;  2XO2 A;  1BC0 A;  1YJ0 A;  1HM6 A;  1W45 A;  1AVH A;  2H0M A;  1BCY A;  1HVG A;  3BRX A;  4MDV A;  1AVR A;  2XO3 A;  1W7B A;  1YII A;  1HVF A;  1AOW A;  1I4A A;  1A8B A;  1ANW A;  1M9I A;  1W3W A;  2IIC A;  1DK5 A;  4X9P A;  2Q4C A;  4HRE A;  1HVE A;  1A8A A;  1ANX A;  1G5N A;  1XJL A;  1AEI A;  2HYU A;  2II2 A;  1N00 A;  2IE7 A;  1N41 A;  1AII A;  1ALA A;  1BC1 A;  1N42 A;  1BO9 A;  1MCX A;  2HYW A;  1YCN A;  1HAK A;  2ZOC A;  4EVF A;  2HYV A;  1AXN A;  1BCW A; 
#chains in the Genus database with same CATH topology
 4MDU A;  3SOH B;  2IE6 A;  2ZHI A;  1XSZ A;  4EVH A;  1QC7 A;  2RAN A;  2XO2 A;  3ABQ A;  1YJ0 A;  3AO0 A;  1W7B A;  1AOW A;  4D7Q A;  2R09 A;  1DK5 A;  4X9P A;  3SWV A;  1HVE A;  1A8A A;  1ANX A;  1XJL A;  1Q8D A;  1KU1 A;  1R4A E;  2HYW A;  1HAK A;  1AXN A;  2H0K A;  1R8S E;  2K6X A;  1ANN A;  3USY A;  2QEZ A;  2HSN A;  1HM6 A;  3ABR A;  2VXG A;  4KN7 X;  3ANY A;  1I4A A;  1W3W A;  4HRE A;  1G5N A;  3L8N A;  1RE0 B;  1BC9 A;  1N42 A;  1BO9 A;  4JK1 X;  2ZOC A;  4EVF A;  2ZHJ A;  1BCZ A;  4C0A A;  1LKV X;  1N44 A;  1R8M E;  1HVD A;  3ABO A;  3LTL A;  2H0L A;  4OIY A;  1W45 A;  1PBV A;  2H0M A;  1BCY A;  4KN4 X;  1AVR A;  4Z21 A;  1C1K A;  1A8B A;  1ANW A;  1M9I A;  4JXH A;  1XT0 B;  2Q4C A;  3TW5 A;  1N00 A;  1N41 A;  1AII A;  1BC1 A;  2R0D A;  1HVF A;  1BC3 A;  4D7R A;  1UPT B;  3ABS A;  1SAV A;  4C7P A;  1AVC A;  1DM5 A;  4KMU X;  1BC0 A;  4Q2S A;  1S9D E;  1AVH A;  3AJC A;  3BRX A;  1HVG A;  4JMO A;  4JWL A;  4MDV A;  2XO3 A;  4FHR B;  1YII A;  4A4P A;  1YGM A;  2IIC A;  4JMI A;  2II2 A;  4FQ0 C;  2HYU A;  1AEI A;  2IE7 A;  1ALA A;  1R8Q E;  3USW A;  1MCX A;  4L5M A;  1YCN A;  2HYV A;  2OY9 A;  3HJL A;  1BCW A; 
#chains in the Genus database with same CATH homology
 2ZHJ A;  4MDU A;  1BC3 A;  2H0K A;  2IE6 A;  2ZHI A;  1BCZ A;  1ANN A;  1SAV A;  1N44 A;  1AVC A;  1DM5 A;  4EVH A;  1HVD A;  2H0L A;  2RAN A;  2XO2 A;  1BC0 A;  1YJ0 A;  1HM6 A;  1W45 A;  1AVH A;  2H0M A;  1BCY A;  1HVG A;  3BRX A;  4MDV A;  1AVR A;  2XO3 A;  1W7B A;  1YII A;  1HVF A;  1AOW A;  1I4A A;  1A8B A;  1ANW A;  1M9I A;  1W3W A;  2IIC A;  1DK5 A;  4X9P A;  2Q4C A;  4HRE A;  1HVE A;  1A8A A;  1ANX A;  1G5N A;  1XJL A;  1AEI A;  2HYU A;  2II2 A;  1N00 A;  2IE7 A;  1N41 A;  1AII A;  1ALA A;  1BC1 A;  1N42 A;  1BO9 A;  1MCX A;  2HYW A;  1YCN A;  1HAK A;  2ZOC A;  4EVF A;  2HYV A;  1AXN A;  1BCW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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