1HXUA

Ompf porin mutant kk
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
340
structure length
340
Chain Sequence
AEIYNKDGNKVDLYGKAKGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVKRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Escherichia coli
publication title Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN F
total genus 103
structure length 340
sequence length 340
ec nomenclature
pdb deposition date 2001-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1hxuA00
4JFBA 1MPFA 4GCSA 4KR8A 2Y0HA 3UU2A 2FGQX 3SZVA 1OSMA 5DL5A 3POUA 1GFNA 4D64A 2J4UP 8PRNA 2FGRA 2Y0LA 4RJXA 3VZUX 2Y0KA 4FSPA 1GFMA 5DL7A 2ZLDA 4LSHA 3VZWX 7PRNA 3VY9X 3T0SA 1HXTA 3JTYA 3PORA 4GCPA 4FSOA 3HW9A 4D65A 1PRNA 1GFQA 3HWBA 2XG6A 4FOZA 2K4TA 1HXUA 3VY8X 1E54A 3POXA 2QTKA 5DL6A 3PRNA 1BT9A 4C69X 3UPGA 2J1NA 5DL8A 3T20A 3SY7A 2XE2A 4BUMX 3SYBA 1GFPA 3FYXA 4AUIA 5PRNA 3VZTX 4D5UA 2Y2XA 3A2SX 4FMSA 2OMFA 4RJWA 1GFOA 1OPFA 3NSGA 2O4VA 3WI4A 2XE3A 4KRAA 1H6S1 4LSEA 4FRTA 3O0EA 3EMNX 4LSIA 2ZFGA 1BH3A 3WI5A 3POQA 4KR4A 3SZDA 3SY9A 2XE1A 1HXXA 5FVNA 2PORA 3K19A 2PRNA 1PHOA 4FRXA 2XE5A 2ODJA 3T24A 4FT6A 6PRNA 5JDPA 3SYSA 4LSFA 4GCQA
chains in the Genus database with same CATH superfamily
4JFBA 1MPFA 2KZ7B 2LHFA 2XTRA 3AA7B 3HOEA 5G3AA 1ZHXA 4GCSA 3QRCA 4PJ0O 4KR8A 1T1LA 2KZ7A 2K0LA 2MHLA 2Y0HA 2WJRA 3UU2A 5AFUK 3AA1B 2FGQX 2F1CX 2WVPA 2R89A 4AYDC 2LFUA 2X27X 4O3ZA 5B5EO 3G7GA 3SZVA 1OSMA 4PR7A 4AYEC 3RBHA 4O3YA 2ERVA 5DL5A 3POUA 3GP6A 1S5LO 5EE2A 3LK3B 3AA0B 4XNLA 4O49A 1ZHWA 3PF1A 4O3XB 1P4TA 2Y7SA 1GFNA 4U9CA 4GHBA 3TZGA 2R88A 4FZMA 4E1SA 5KAFO 1BXWA 2KDYA 3DA4A 3LK3A 2AXTO 4D64A 5B66O 5GV0A 3DWNA 2X9KA 3LK42 2J4UP 8PRNA 2N2LA 2FGRA 4JCHA 2KXPB 5E79O 2WJQA 2Y0LA 4F4BA 4FQEA 4N58A 4RJXA 3DWOX 2Y0KA 4FSPA 3VZUX 1GFMA 3VE2A 2F1VA 2W81C 5DL7A 2ZLDA 3A0BO 3PGSA 3PQSA 5G39A 4LSHA 3VZWX 7PRNA 3VY9X 3T0SA 1HXTA 3AA7A 3JTYA 3PORA 5G38A 5T5FA 4GCPA 4AZLA 4FSOA 3HW9A 5KAIO 4XNKA 4AKRB 3LK2B 4G75A 1PRNA 3WU2O 1GFQA 3HWBA 4AFKA 2R4LA 3AAAB 1QJPA 3AA1A 2M06A 2XG6A 3AAEB 1THQA 2K4TA 4FOZA 4AKRA 3KZIO 1HXUA 3A0HO 3AAAA 4K3BA 3VY8X 3PGUA 4FESA 4E1TA 5AFUL 3C5OA 3AA0A 3VE1A 4AYID 1E54A 2QTKA 3POXA 1BT9A 3PRNA 4FZNA 3KVDD 5DL6A 2N2MA 4C69X 3UPGA 3HOLA 2J1NA 4O3WA 5ADXK 1Q9FA 2R4PA 5DL8A 1YS5A 1ORMA 3T20A 2KXPA 1QJ9A 3DZMA 3SY7A 2XE2A 4QQ1A 4BUMX 2YNKA 3JCUO 4IL6O 2KC0A 3SYBA 3PGRA 1GFPA 3FYXA 4AUIA 4N75A 4O4XA 5PRNA 4C4VB 5IYUA 3VZTX 4FUVA 4D5UA 2Y2XA 4K3CA 4UB8O 2JMMA 2JQYA 3A2SX 4FMSA 3QRAA 3DA3A 4Z3TA 1Q9GA 2OMFA 4RJWA 1GFOA 1OPFA 3LK2A 3NSGA 2O4VA 5D5DA 1ZHZA 3WI4A 4N74A 2XE3A 3BRZA 4KRAA 3AAEA 1H6S1 3PQUA 1MM5A 1ZHYA 4LSEA 4FRTA 4AYNA 4PUXA 4AKMA 2YPVA 3O0EA 4RL9A 2R4NA 3UAQA 3EMNX 4FZLA 3BRYA 4G76A 2F1TA 4LSIA 5G26A 5GTHO 2ZFGA 3BS0A 1BH3A 3V8UA 3WI5A 3POQA 4AYMC 2MNHA 4GF4A 1IZNB 2IWWA 4KR4A 2R4OA 4CTDA 3SZDA 4B61A 3SY9A 2GE4A 4O4UA 2XE1A 1IZNA 1HXXA 2PORA 5FVNA 4D65A 5TISO 2XTQA 3K19A 5ADXL 2PRNA 4N59A 1PHOA 4RLBA 1G90A 3AA6B 1QJ8A 4FRXA 4C4VA 2XE5A 2XMXA 2ODJA 1T16A 3LK41 4RLCA 1MM4A 4FT6A 3T24A 6PRNA 4C00A 5H2FO 2IWVA 5JDPA 3AA6A 3SYSA 2R8AA 1ZHTA 2W80C 4LSFA 2M07A 3NJTA 4UB6O 4GCQA 5GTIO
chains in the Genus database with same CATH topology
4JFBA 1MPFA 2KZ7B 2LHFA 2XTRA 3AA7B 3HOEA 1ZHXA 4GCSA 3QRCA 4KR8A 2KZ7A 2K0LA 2MHLA 2Y0HA 3UU2A 5AFUK 3AA1B 2FGQX 4AYDC 2LFUA 2X27X 4O3ZA 3G7GA 3SZVA 1OSMA 4AYEC 3RBHA 4O3YA 2ERVA 5DL5A 3POUA 3GP6A 5EE2A 3LK3B 3AA0B 4XNLA 4O49A 1ZHWA 4O3XB 4U9CA 1P4TA 2Y7SA 1GFNA 4GHBA 3TZGA 4E1SA 4FZMA 1BXWA 2KDYA 3DA4A 3LK3A 4D64A 5GV0A 3LK42 2J4UP 8PRNA 2N2LA 2FGRA 4JCHA 2KXPB 2Y0LA 4F4BA 4N58A 4RJXA 3VZUX 2Y0KA 4FSPA 1GFMA 3VE2A 2F1VA 2W81C 5DL7A 2ZLDA 3PQSA 4LSHA 3VZWX 7PRNA 3VY9X 3T0SA 1HXTA 3AA7A 3JTYA 3PORA 5T5FA 4GCPA 4AZLA 4FSOA 3HW9A 4XNKA 4AKRB 3LK2B 4G75A 1PRNA 4AFKA 1GFQA 3HWBA 4D65A 3AAAB 1QJPA 3AA1A 2M06A 2XG6A 3AAEB 1THQA 2K4TA 4FOZA 4AKRA 1HXUA 3AAAA 3VY8X 4FESA 4E1TA 5AFUL 3C5OA 3AA0A 3VE1A 4AYID 1E54A 2QTKA 3POXA 1BT9A 3PRNA 4FZNA 3KVDD 5DL6A 2N2MA 4C69X 3UPGA 3HOLA 2J1NA 4O3WA 5ADXK 1Q9FA 5DL8A 1YS5A 1ORMA 3T20A 2KXPA 1QJ9A 3SY7A 2XE2A 4QQ1A 4BUMX 2YNKA 3SYBA 2KC0A 1GFPA 3FYXA 4AUIA 4O4XA 5PRNA 5IYUA 3VZTX 4FUVA 4D5UA 2Y2XA 2JMMA 3A2SX 4FMSA 3QRAA 3DA3A 4Z3TA 1Q9GA 2OMFA 4RJWA 1GFOA 1OPFA 3LK2A 3NSGA 2O4VA 5D5DA 1ZHZA 3WI4A 2XE3A 4KRAA 3AAEA 1H6S1 3PQUA 1MM5A 1ZHYA 4LSEA 4FRTA 4AYNA 4PUXA 4AKMA 2YPVA 3O0EA 4RL9A 3UAQA 3EMNX 4FZLA 4G76A 2F1TA 4LSIA 5G26A 2ZFGA 1BH3A 3V8UA 3WI5A 3POQA 4AYMC 2MNHA 4GF4A 1IZNB 4KR4A 3SZDA 4B61A 3SY9A 2GE4A 4O4UA 2XE1A 1IZNA 1HXXA 2PORA 5FVNA 2XTQA 3K19A 5ADXL 2PRNA 4N59A 1PHOA 4RLBA 1G90A 3AA6B 1QJ8A 4FRXA 2XE5A 2XMXA 2ODJA 3LK41 4RLCA 3T24A 1MM4A 4FT6A 6PRNA 5JDPA 3AA6A 3SYSA 2W80C 1ZHTA 4LSFA 2M07A 4GCQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JFB A;  1MPF A;  4GCS A;  4KR8 A;  2Y0H A;  3UU2 A;  2FGQ X;  3SZV A;  1OSM A;  5DL5 A;  3POU A;  1GFN A;  4D64 A;  2J4U P;  8PRN A;  2FGR A;  2Y0L A;  4RJX A;  3VZU X;  2Y0K A;  4FSP A;  1GFM A;  5DL7 A;  2ZLD A;  4LSH A;  3VZW X;  7PRN A;  3VY9 X;  3T0S A;  1HXT A;  3JTY A;  3POR A;  4GCP A;  4FSO A;  3HW9 A;  4D65 A;  1PRN A;  1GFQ A;  3HWB A;  2XG6 A;  4FOZ A;  2K4T A;  1HXU A;  3VY8 X;  1E54 A;  3POX A;  2QTK A;  5DL6 A;  3PRN A;  1BT9 A;  4C69 X;  3UPG A;  2J1N A;  5DL8 A;  3T20 A;  3SY7 A;  2XE2 A;  4BUM X;  3SYB A;  1GFP A;  3FYX A;  4AUI A;  5PRN A;  3VZT X;  4D5U A;  2Y2X A;  3A2S X;  4FMS A;  2OMF A;  4RJW A;  1GFO A;  1OPF A;  3NSG A;  2O4V A;  3WI4 A;  2XE3 A;  4KRA A;  1H6S 1;  4LSE A;  4FRT A;  3O0E A;  3EMN X;  4LSI A;  2ZFG A;  1BH3 A;  3WI5 A;  3POQ A;  4KR4 A;  3SZD A;  3SY9 A;  2XE1 A;  1HXX A;  5FVN A;  2POR A;  3K19 A;  2PRN A;  1PHO A;  4FRX A;  2XE5 A;  2ODJ A;  3T24 A;  4FT6 A;  6PRN A;  5JDP A;  3SYS A;  4LSF A;  4GCQ A; 
#chains in the Genus database with same CATH topology
 4JFB A;  1MPF A;  2KZ7 B;  2LHF A;  2XTR A;  3AA7 B;  3HOE A;  5G3A A;  1ZHX A;  4GCS A;  3QRC A;  4PJ0 O;  4KR8 A;  1T1L A;  2KZ7 A;  2K0L A;  2MHL A;  2Y0H A;  2WJR A;  3UU2 A;  5AFU K;  3AA1 B;  2FGQ X;  2F1C X;  2WVP A;  2R89 A;  4AYD C;  2LFU A;  2X27 X;  4O3Z A;  5B5E O;  3G7G A;  3SZV A;  1OSM A;  4PR7 A;  4AYE C;  3RBH A;  4O3Y A;  2ERV A;  5DL5 A;  3POU A;  3GP6 A;  1S5L O;  5EE2 A;  3LK3 B;  3AA0 B;  4XNL A;  4O49 A;  1ZHW A;  3PF1 A;  4O3X B;  1P4T A;  2Y7S A;  1GFN A;  4U9C A;  4GHB A;  3TZG A;  2R88 A;  4FZM A;  4E1S A;  5KAF O;  1BXW A;  2KDY A;  3DA4 A;  3LK3 A;  2AXT O;  4D64 A;  5B66 O;  5GV0 A;  3DWN A;  2X9K A;  3LK4 2;  2J4U P;  8PRN A;  2N2L A;  2FGR A;  4JCH A;  2KXP B;  5E79 O;  2WJQ A;  2Y0L A;  4F4B A;  4FQE A;  4N58 A;  4RJX A;  3DWO X;  2Y0K A;  4FSP A;  3VZU X;  1GFM A;  3VE2 A;  2F1V A;  2W81 C;  5DL7 A;  2ZLD A;  3A0B O;  3PGS A;  3PQS A;  5G39 A;  4LSH A;  3VZW X;  7PRN A;  3VY9 X;  3T0S A;  1HXT A;  3AA7 A;  3JTY A;  3POR A;  5G38 A;  5T5F A;  4GCP A;  4AZL A;  4FSO A;  3HW9 A;  5KAI O;  4XNK A;  4AKR B;  3LK2 B;  4G75 A;  1PRN A;  3WU2 O;  1GFQ A;  3HWB A;  4AFK A;  2R4L A;  3AAA B;  1QJP A;  3AA1 A;  2M06 A;  2XG6 A;  3AAE B;  1THQ A;  2K4T A;  4FOZ A;  4AKR A;  3KZI O;  1HXU A;  3A0H O;  3AAA A;  4K3B A;  3VY8 X;  3PGU A;  4FES A;  4E1T A;  5AFU L;  3C5O A;  3AA0 A;  3VE1 A;  4AYI D;  1E54 A;  2QTK A;  3POX A;  1BT9 A;  3PRN A;  4FZN A;  3KVD D;  5DL6 A;  2N2M A;  4C69 X;  3UPG A;  3HOL A;  2J1N A;  4O3W A;  5ADX K;  1Q9F A;  2R4P A;  5DL8 A;  1YS5 A;  1ORM A;  3T20 A;  2KXP A;  1QJ9 A;  3DZM A;  3SY7 A;  2XE2 A;  4QQ1 A;  4BUM X;  2YNK A;  3JCU O;  4IL6 O;  2KC0 A;  3SYB A;  3PGR A;  1GFP A;  3FYX A;  4AUI A;  4N75 A;  4O4X A;  5PRN A;  4C4V B;  5IYU A;  3VZT X;  4FUV A;  4D5U A;  2Y2X A;  4K3C A;  4UB8 O;  2JMM A;  2JQY A;  3A2S X;  4FMS A;  3QRA A;  3DA3 A;  4Z3T A;  1Q9G A;  2OMF A;  4RJW A;  1GFO A;  1OPF A;  3LK2 A;  3NSG A;  2O4V A;  5D5D A;  1ZHZ A;  3WI4 A;  4N74 A;  2XE3 A;  3BRZ A;  4KRA A;  3AAE A;  1H6S 1;  3PQU A;  1MM5 A;  1ZHY A;  4LSE A;  4FRT A;  4AYN A;  4PUX A;  4AKM A;  2YPV A;  3O0E A;  4RL9 A;  2R4N A;  3UAQ A;  3EMN X;  4FZL A;  3BRY A;  4G76 A;  2F1T A;  4LSI A;  5G26 A;  5GTH O;  2ZFG A;  3BS0 A;  1BH3 A;  3V8U A;  3WI5 A;  3POQ A;  4AYM C;  2MNH A;  4GF4 A;  1IZN B;  2IWW A;  4KR4 A;  2R4O A;  4CTD A;  3SZD A;  4B61 A;  3SY9 A;  2GE4 A;  4O4U A;  2XE1 A;  1IZN A;  1HXX A;  2POR A;  5FVN A;  4D65 A;  5TIS O;  2XTQ A;  3K19 A;  5ADX L;  2PRN A;  4N59 A;  1PHO A;  4RLB A;  1G90 A;  3AA6 B;  1QJ8 A;  4FRX A;  4C4V A;  2XE5 A;  2XMX A;  2ODJ A;  1T16 A;  3LK4 1;  4RLC A;  1MM4 A;  4FT6 A;  3T24 A;  6PRN A;  4C00 A;  5H2F O;  2IWV A;  5JDP A;  3AA6 A;  3SYS A;  2R8A A;  1ZHT A;  2W80 C;  4LSF A;  2M07 A;  3NJT A;  4UB6 O;  4GCQ A;  5GTI O; 
#chains in the Genus database with same CATH homology
 4JFB A;  1MPF A;  2KZ7 B;  2LHF A;  2XTR A;  3AA7 B;  3HOE A;  1ZHX A;  4GCS A;  3QRC A;  4KR8 A;  2KZ7 A;  2K0L A;  2MHL A;  2Y0H A;  3UU2 A;  5AFU K;  3AA1 B;  2FGQ X;  4AYD C;  2LFU A;  2X27 X;  4O3Z A;  3G7G A;  3SZV A;  1OSM A;  4AYE C;  3RBH A;  4O3Y A;  2ERV A;  5DL5 A;  3POU A;  3GP6 A;  5EE2 A;  3LK3 B;  3AA0 B;  4XNL A;  4O49 A;  1ZHW A;  4O3X B;  4U9C A;  1P4T A;  2Y7S A;  1GFN A;  4GHB A;  3TZG A;  4E1S A;  4FZM A;  1BXW A;  2KDY A;  3DA4 A;  3LK3 A;  4D64 A;  5GV0 A;  3LK4 2;  2J4U P;  8PRN A;  2N2L A;  2FGR A;  4JCH A;  2KXP B;  2Y0L A;  4F4B A;  4N58 A;  4RJX A;  3VZU X;  2Y0K A;  4FSP A;  1GFM A;  3VE2 A;  2F1V A;  2W81 C;  5DL7 A;  2ZLD A;  3PQS A;  4LSH A;  3VZW X;  7PRN A;  3VY9 X;  3T0S A;  1HXT A;  3AA7 A;  3JTY A;  3POR A;  5T5F A;  4GCP A;  4AZL A;  4FSO A;  3HW9 A;  4XNK A;  4AKR B;  3LK2 B;  4G75 A;  1PRN A;  4AFK A;  1GFQ A;  3HWB A;  4D65 A;  3AAA B;  1QJP A;  3AA1 A;  2M06 A;  2XG6 A;  3AAE B;  1THQ A;  2K4T A;  4FOZ A;  4AKR A;  1HXU A;  3AAA A;  3VY8 X;  4FES A;  4E1T A;  5AFU L;  3C5O A;  3AA0 A;  3VE1 A;  4AYI D;  1E54 A;  2QTK A;  3POX A;  1BT9 A;  3PRN A;  4FZN A;  3KVD D;  5DL6 A;  2N2M A;  4C69 X;  3UPG A;  3HOL A;  2J1N A;  4O3W A;  5ADX K;  1Q9F A;  5DL8 A;  1YS5 A;  1ORM A;  3T20 A;  2KXP A;  1QJ9 A;  3SY7 A;  2XE2 A;  4QQ1 A;  4BUM X;  2YNK A;  3SYB A;  2KC0 A;  1GFP A;  3FYX A;  4AUI A;  4O4X A;  5PRN A;  5IYU A;  3VZT X;  4FUV A;  4D5U A;  2Y2X A;  2JMM A;  3A2S X;  4FMS A;  3QRA A;  3DA3 A;  4Z3T A;  1Q9G A;  2OMF A;  4RJW A;  1GFO A;  1OPF A;  3LK2 A;  3NSG A;  2O4V A;  5D5D A;  1ZHZ A;  3WI4 A;  2XE3 A;  4KRA A;  3AAE A;  1H6S 1;  3PQU A;  1MM5 A;  1ZHY A;  4LSE A;  4FRT A;  4AYN A;  4PUX A;  4AKM A;  2YPV A;  3O0E A;  4RL9 A;  3UAQ A;  3EMN X;  4FZL A;  4G76 A;  2F1T A;  4LSI A;  5G26 A;  2ZFG A;  1BH3 A;  3V8U A;  3WI5 A;  3POQ A;  4AYM C;  2MNH A;  4GF4 A;  1IZN B;  4KR4 A;  3SZD A;  4B61 A;  3SY9 A;  2GE4 A;  4O4U A;  2XE1 A;  1IZN A;  1HXX A;  2POR A;  5FVN A;  2XTQ A;  3K19 A;  5ADX L;  2PRN A;  4N59 A;  1PHO A;  4RLB A;  1G90 A;  3AA6 B;  1QJ8 A;  4FRX A;  2XE5 A;  2XMX A;  2ODJ A;  3LK4 1;  4RLC A;  3T24 A;  1MM4 A;  4FT6 A;  6PRN A;  5JDP A;  3AA6 A;  3SYS A;  2W80 C;  1ZHT A;  4LSF A;  2M07 A;  4GCQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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