1HXUA

Ompf porin mutant kk
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
340
structure length
340
Chain Sequence
b'AEIYNKDGNKVDLYGKAKGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVKRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN F
source organism Escherichia coli
molecule tags Membrane protein
total genus 103
structure length 340
sequence length 340
ec nomenclature
pdb deposition date 2001-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1hxuA00
7PRNA 4AUIA 3PORA 2XE3A 4GCQA 4KRAA 2Y0LA 5PRNA 1HXXA 2XG6A 3SYSA 2FGRA 3UU2A 4KR4A 4BUMX 1GFNA 4LSHA 3VY9X 3VZTX 3FYXA 8PRNA 3UPGA 4FRTA 3POXA 1PRNA 3T0SA 1BT9A 2PRNA 3HW9A 4D5UA 2XE2A 3SY9A 3POUA 2O4VA 3WI4A 3PRNA 3VY8X 5FVNA 4GCSA 3VZUX 1H6S1 3EMNX 3SZDA 3K19A 4FMSA 1HXUA 6PRNA 5DL7A 2Y0KA 2J4UP 1E54A 3JTYA 2QTKA 2Y0HA 1GFMA 2XE5A 4LSIA 1PHOA 1MPFA 4JFBA 3SZVA 3VZWX 1GFPA 1OPFA 2OMFA 3POQA 4D65A 2ZLDA 4FSPA 3SYBA 5DL8A 4RJWA 5JDPA 1GFQA 1HXTA 2ZFGA 4RJXA 2K4TA 5DL5A 2XE1A 4FT6A 1GFOA 4FRXA 1OSMA 4GCPA 5DL6A 3HWBA 3O0EA 1BH3A 4LSFA 4KR8A 2Y2XA 4D64A 3SY7A 3WI5A 4FSOA 3A2SX 3T24A 4LSEA 2J1NA 3NSGA 4C69X 2PORA 3T20A 2ODJA 4FOZA 2FGQX
chains in the Genus database with same CATH superfamily
3TZGA 7PRNA 2N2LA 4AFKA 4AUIA 3PORA 2XE3A 3UAQA 3VY8X 4AYEC 3HOEA 4GCQA 4KRAA 2LHFA 3PGRA 3VE2A 2MHLA 5G38A 4AKRB 2KZ7B 3AAEB 1S5LO 3LK3A 4FZLA 1ORMA 2JQYA 3PQUA 4CTDA 3NJTA 2Y0LA 5PRNA 4N59A 1HXXA 2XG6A 4PJ0O 3SYSA 3BS0A 2FGRA 3AA6A 2IWWA 2KXPB 3DZMA 3UU2A 3PGUA 3AA7A 5AFUK 4KR4A 4BUMX 1GFNA 4LSHA 5GTHO 3VY9X 4E1SA 3VZTX 3FYXA 2R4NA 1ZHTA 8PRNA 3LK41 4PUXA 5D5DA 3UPGA 2R4LA 4FRTA 4N58A 3POXA 1PRNA 2K0LA 3T0SA 4FUVA 1BT9A 5KAIO 4U9CA 4FQEA 2R4PA 2IWVA 5B5EO 5ADXK 3G7GA 2XTQA 1T16A 5EE2A 5G26A 2XTRA 2PRNA 3DA4A 3DWNA 3HW9A 4QQ1A 5G39A 4D5UA 2XE2A 2F1CX 4C4VB 2AXTO 3BRYA 4FZNA 4K3CA 3SY9A 2GE4A 5T5FA 4O4XA 1G90A 3POUA 2O4VA 3WI4A 4AYID 3PRNA 4UB6O 2YNKA 4FESA 4RLBA 2F1VA 4GCSA 3PQSA 2N2MA 3C5OA 3KZIO 2XMXA 5FVNA 1QJ9A 1H6S1 3EMNX 5G3AA 3SZDA 3K19A 3VZUX 1ZHYA 4FMSA 4GF4A 1HXUA 2R4OA 5E79O 4Z3TA 6PRNA 5DL7A 2Y0KA 3HOLA 1THQA 1YS5A 2J4UP 1E54A 2WJQA 5B66O 2M06A 2R8AA 3JTYA 3LK2B 4O4UA 2QTKA 2Y0HA 4N74A 2KZ7A 1GFMA 2XE5A 4AKRA 4LSIA 5IYUA 1PHOA 4C00A 1P4TA 1MPFA 2M07A 4JFBA 3AAAB 3SZVA 2JMMA 3WU2O 1Q9GA 3VZWX 2ERVA 1GFPA 1OPFA 3QRCA 4AYDC 2OMFA 3POQA 4D65A 2ZLDA 1QJPA 3GP6A 4FSPA 4G76A 3VE1A 2W80C 3AA1A 4N75A 3A0BO 1IZNA 2X9KA 2W81C 3BRZA 1QJ8A 2KDYA 3LK3B 5TISO 1MM5A 3RBHA 4O3XB 3SYBA 4O3YA 5DL8A 2MNHA 4RJWA 4XNKA 5JDPA 4C4VA 1GFQA 3AA0A 1HXTA 2ZFGA 4F4BA 2WVPA 3DWOX 3AA6B 4IL6O 2R88A 4AYMC 4G75A 3AA7B 4O3ZA 4RJXA 3QRAA 2K4TA 4GHBA 2R89A 2XE1A 5DL5A 5GTIO 1Q9FA 4FT6A 3AAEA 1MM4A 4XNLA 4E1TA 5AFUL 5GV0A 1GFOA 4RLCA 2Y7SA 3A0HO 4FRXA 1OSMA 4GCPA 4FZMA 3V8UA 5H2FO 5DL6A 5KAFO 3PF1A 2WJRA 3HWBA 2KXPA 4PR7A 2KC0A 1T1LA 3O0EA 1ZHWA 4AYNA 1BH3A 3LK42 4K3BA 1BXWA 3JCUO 4KR8A 2Y2XA 4LSFA 4RL9A 4UB8O 3SY7A 3WI5A 4AZLA 4B61A 4D64A 4FSOA 3LK2A 3KVDD 1ZHXA 2X27X 5ADXL 2YPVA 3DA3A 1ZHZA 3A2SX 3AA1B 4LSEA 3T24A 2J1NA 4JCHA 2F1TA 3NSGA 2LFUA 1IZNB 4C69X 4AKMA 2PORA 3T20A 4O49A 3PGSA 4O3WA 2ODJA 4FOZA 3AAAA 3AA0B 2FGQX
chains in the Genus database with same CATH topology
3TZGA 7PRNA 2N2LA 4AFKA 4AUIA 3PORA 2XE3A 3UAQA 3VY8X 4AYEC 3HOEA 4GCQA 4KRAA 2LHFA 3VE2A 2MHLA 4AKRB 2KZ7B 3AAEB 3LK3A 4FZLA 1ORMA 3PQUA 2Y0LA 5PRNA 4N59A 1HXXA 2XG6A 3SYSA 2FGRA 3AA6A 2KXPB 3UU2A 5AFUK 3AA7A 4KR4A 4BUMX 1GFNA 4LSHA 3VY9X 4E1SA 3VZTX 3FYXA 1ZHTA 8PRNA 3LK41 4PUXA 5D5DA 3UPGA 4FRTA 4N58A 3POXA 1PRNA 2K0LA 3T0SA 4FUVA 1BT9A 4U9CA 5ADXK 3G7GA 2XTQA 5EE2A 5G26A 2XTRA 2PRNA 3DA4A 3HW9A 4QQ1A 4D5UA 2XE2A 4FZNA 3SY9A 2GE4A 5T5FA 4O4XA 1G90A 3POUA 2O4VA 3WI4A 4AYID 3PRNA 2YNKA 4FESA 4RLBA 2F1VA 4GCSA 3PQSA 2N2MA 3C5OA 5FVNA 2XMXA 3VZUX 1QJ9A 1H6S1 3EMNX 3SZDA 3K19A 1ZHYA 4FMSA 4GF4A 1HXUA 4Z3TA 6PRNA 5DL7A 2Y0KA 3HOLA 1THQA 1YS5A 2J4UP 1E54A 2M06A 3LK2B 3JTYA 4O4UA 3RBHA 2QTKA 2Y0HA 4AKRA 2KZ7A 1GFMA 2XE5A 4LSIA 1PHOA 1P4TA 1MPFA 2M07A 4JFBA 3AAAB 3SZVA 2JMMA 1Q9GA 3VZWX 2ERVA 1GFPA 1OPFA 3QRCA 4AYDC 2OMFA 3POQA 4D65A 2ZLDA 1QJPA 3GP6A 4FSPA 4G76A 3VE1A 2W80C 3AA1A 1IZNA 2W81C 3LK3B 1QJ8A 2KDYA 1MM5A 4O3XB 3SYBA 4O3YA 5DL8A 2MNHA 4RJWA 4XNKA 5JDPA 1GFQA 3AA0A 1HXTA 2ZFGA 4F4BA 3AA6B 4AYMC 4G75A 3AA7B 4O3ZA 4RJXA 3QRAA 2K4TA 4GHBA 5DL5A 2XE1A 1Q9FA 4FT6A 3AAEA 1MM4A 4XNLA 4E1TA 5AFUL 5GV0A 1GFOA 4RLCA 2Y7SA 4FRXA 5IYUA 1OSMA 4GCPA 4FZMA 3V8UA 5DL6A 3HWBA 2KXPA 2KC0A 3O0EA 1ZHWA 4AYNA 1BH3A 3LK42 4LSFA 1BXWA 4RL9A 4KR8A 2Y2XA 4AZLA 4B61A 4D64A 3SY7A 3WI5A 4FSOA 3LK2A 3KVDD 1ZHXA 2X27X 5ADXL 2YPVA 3DA3A 1ZHZA 3A2SX 3AA1B 4LSEA 3T24A 2J1NA 4JCHA 2F1TA 3NSGA 2LFUA 1IZNB 4C69X 4AKMA 2PORA 3T20A 4O49A 4O3WA 2ODJA 4FOZA 3AAAA 3AA0B 2FGQX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 7PRN A;  4AUI A;  3POR A;  2XE3 A;  4GCQ A;  4KRA A;  2Y0L A;  5PRN A;  1HXX A;  2XG6 A;  3SYS A;  2FGR A;  3UU2 A;  4KR4 A;  4BUM X;  1GFN A;  4LSH A;  3VY9 X;  3VZT X;  3FYX A;  8PRN A;  3UPG A;  4FRT A;  3POX A;  1PRN A;  3T0S A;  1BT9 A;  2PRN A;  3HW9 A;  4D5U A;  2XE2 A;  3SY9 A;  3POU A;  2O4V A;  3WI4 A;  3PRN A;  3VY8 X;  5FVN A;  4GCS A;  3VZU X;  1H6S 1;  3EMN X;  3SZD A;  3K19 A;  4FMS A;  1HXU A;  6PRN A;  5DL7 A;  2Y0K A;  2J4U P;  1E54 A;  3JTY A;  2QTK A;  2Y0H A;  1GFM A;  2XE5 A;  4LSI A;  1PHO A;  1MPF A;  4JFB A;  3SZV A;  3VZW X;  1GFP A;  1OPF A;  2OMF A;  3POQ A;  4D65 A;  2ZLD A;  4FSP A;  3SYB A;  5DL8 A;  4RJW A;  5JDP A;  1GFQ A;  1HXT A;  2ZFG A;  4RJX A;  2K4T A;  5DL5 A;  2XE1 A;  4FT6 A;  1GFO A;  4FRX A;  1OSM A;  4GCP A;  5DL6 A;  3HWB A;  3O0E A;  1BH3 A;  4LSF A;  4KR8 A;  2Y2X A;  4D64 A;  3SY7 A;  3WI5 A;  4FSO A;  3A2S X;  3T24 A;  4LSE A;  2J1N A;  3NSG A;  4C69 X;  2POR A;  3T20 A;  2ODJ A;  4FOZ A;  2FGQ X; 
#chains in the Genus database with same CATH topology
 3TZG A;  7PRN A;  2N2L A;  4AFK A;  4AUI A;  3POR A;  2XE3 A;  3UAQ A;  3VY8 X;  4AYE C;  3HOE A;  4GCQ A;  4KRA A;  2LHF A;  3PGR A;  3VE2 A;  2MHL A;  5G38 A;  4AKR B;  2KZ7 B;  3AAE B;  1S5L O;  3LK3 A;  4FZL A;  1ORM A;  2JQY A;  3PQU A;  4CTD A;  3NJT A;  2Y0L A;  5PRN A;  4N59 A;  1HXX A;  2XG6 A;  4PJ0 O;  3SYS A;  3BS0 A;  2FGR A;  3AA6 A;  2IWW A;  2KXP B;  3DZM A;  3UU2 A;  3PGU A;  3AA7 A;  5AFU K;  4KR4 A;  4BUM X;  1GFN A;  4LSH A;  5GTH O;  3VY9 X;  4E1S A;  3VZT X;  3FYX A;  2R4N A;  1ZHT A;  8PRN A;  3LK4 1;  4PUX A;  5D5D A;  3UPG A;  2R4L A;  4FRT A;  4N58 A;  3POX A;  1PRN A;  2K0L A;  3T0S A;  4FUV A;  1BT9 A;  5KAI O;  4U9C A;  4FQE A;  2R4P A;  2IWV A;  5B5E O;  5ADX K;  3G7G A;  2XTQ A;  1T16 A;  5EE2 A;  5G26 A;  2XTR A;  2PRN A;  3DA4 A;  3DWN A;  3HW9 A;  4QQ1 A;  5G39 A;  4D5U A;  2XE2 A;  2F1C X;  4C4V B;  2AXT O;  3BRY A;  4FZN A;  4K3C A;  3SY9 A;  2GE4 A;  5T5F A;  4O4X A;  1G90 A;  3POU A;  2O4V A;  3WI4 A;  4AYI D;  3PRN A;  4UB6 O;  2YNK A;  4FES A;  4RLB A;  2F1V A;  4GCS A;  3PQS A;  2N2M A;  3C5O A;  3KZI O;  2XMX A;  5FVN A;  1QJ9 A;  1H6S 1;  3EMN X;  5G3A A;  3SZD A;  3K19 A;  3VZU X;  1ZHY A;  4FMS A;  4GF4 A;  1HXU A;  2R4O A;  5E79 O;  4Z3T A;  6PRN A;  5DL7 A;  2Y0K A;  3HOL A;  1THQ A;  1YS5 A;  2J4U P;  1E54 A;  2WJQ A;  5B66 O;  2M06 A;  2R8A A;  3JTY A;  3LK2 B;  4O4U A;  2QTK A;  2Y0H A;  4N74 A;  2KZ7 A;  1GFM A;  2XE5 A;  4AKR A;  4LSI A;  5IYU A;  1PHO A;  4C00 A;  1P4T A;  1MPF A;  2M07 A;  4JFB A;  3AAA B;  3SZV A;  2JMM A;  3WU2 O;  1Q9G A;  3VZW X;  2ERV A;  1GFP A;  1OPF A;  3QRC A;  4AYD C;  2OMF A;  3POQ A;  4D65 A;  2ZLD A;  1QJP A;  3GP6 A;  4FSP A;  4G76 A;  3VE1 A;  2W80 C;  3AA1 A;  4N75 A;  3A0B O;  1IZN A;  2X9K A;  2W81 C;  3BRZ A;  1QJ8 A;  2KDY A;  3LK3 B;  5TIS O;  1MM5 A;  3RBH A;  4O3X B;  3SYB A;  4O3Y A;  5DL8 A;  2MNH A;  4RJW A;  4XNK A;  5JDP A;  4C4V A;  1GFQ A;  3AA0 A;  1HXT A;  2ZFG A;  4F4B A;  2WVP A;  3DWO X;  3AA6 B;  4IL6 O;  2R88 A;  4AYM C;  4G75 A;  3AA7 B;  4O3Z A;  4RJX A;  3QRA A;  2K4T A;  4GHB A;  2R89 A;  2XE1 A;  5DL5 A;  5GTI O;  1Q9F A;  4FT6 A;  3AAE A;  1MM4 A;  4XNL A;  4E1T A;  5AFU L;  5GV0 A;  1GFO A;  4RLC A;  2Y7S A;  3A0H O;  4FRX A;  1OSM A;  4GCP A;  4FZM A;  3V8U A;  5H2F O;  5DL6 A;  5KAF O;  3PF1 A;  2WJR A;  3HWB A;  2KXP A;  4PR7 A;  2KC0 A;  1T1L A;  3O0E A;  1ZHW A;  4AYN A;  1BH3 A;  3LK4 2;  4K3B A;  1BXW A;  3JCU O;  4KR8 A;  2Y2X A;  4LSF A;  4RL9 A;  4UB8 O;  3SY7 A;  3WI5 A;  4AZL A;  4B61 A;  4D64 A;  4FSO A;  3LK2 A;  3KVD D;  1ZHX A;  2X27 X;  5ADX L;  2YPV A;  3DA3 A;  1ZHZ A;  3A2S X;  3AA1 B;  4LSE A;  3T24 A;  2J1N A;  4JCH A;  2F1T A;  3NSG A;  2LFU A;  1IZN B;  4C69 X;  4AKM A;  2POR A;  3T20 A;  4O49 A;  3PGS A;  4O3W A;  2ODJ A;  4FOZ A;  3AAA A;  3AA0 B;  2FGQ X; 
#chains in the Genus database with same CATH homology
 3TZG A;  7PRN A;  2N2L A;  4AFK A;  4AUI A;  3POR A;  2XE3 A;  3UAQ A;  3VY8 X;  4AYE C;  3HOE A;  4GCQ A;  4KRA A;  2LHF A;  3VE2 A;  2MHL A;  4AKR B;  2KZ7 B;  3AAE B;  3LK3 A;  4FZL A;  1ORM A;  3PQU A;  2Y0L A;  5PRN A;  4N59 A;  1HXX A;  2XG6 A;  3SYS A;  2FGR A;  3AA6 A;  2KXP B;  3UU2 A;  5AFU K;  3AA7 A;  4KR4 A;  4BUM X;  1GFN A;  4LSH A;  3VY9 X;  4E1S A;  3VZT X;  3FYX A;  1ZHT A;  8PRN A;  3LK4 1;  4PUX A;  5D5D A;  3UPG A;  4FRT A;  4N58 A;  3POX A;  1PRN A;  2K0L A;  3T0S A;  4FUV A;  1BT9 A;  4U9C A;  5ADX K;  3G7G A;  2XTQ A;  5EE2 A;  5G26 A;  2XTR A;  2PRN A;  3DA4 A;  3HW9 A;  4QQ1 A;  4D5U A;  2XE2 A;  4FZN A;  3SY9 A;  2GE4 A;  5T5F A;  4O4X A;  1G90 A;  3POU A;  2O4V A;  3WI4 A;  4AYI D;  3PRN A;  2YNK A;  4FES A;  4RLB A;  2F1V A;  4GCS A;  3PQS A;  2N2M A;  3C5O A;  5FVN A;  2XMX A;  3VZU X;  1QJ9 A;  1H6S 1;  3EMN X;  3SZD A;  3K19 A;  1ZHY A;  4FMS A;  4GF4 A;  1HXU A;  4Z3T A;  6PRN A;  5DL7 A;  2Y0K A;  3HOL A;  1THQ A;  1YS5 A;  2J4U P;  1E54 A;  2M06 A;  3LK2 B;  3JTY A;  4O4U A;  3RBH A;  2QTK A;  2Y0H A;  4AKR A;  2KZ7 A;  1GFM A;  2XE5 A;  4LSI A;  1PHO A;  1P4T A;  1MPF A;  2M07 A;  4JFB A;  3AAA B;  3SZV A;  2JMM A;  1Q9G A;  3VZW X;  2ERV A;  1GFP A;  1OPF A;  3QRC A;  4AYD C;  2OMF A;  3POQ A;  4D65 A;  2ZLD A;  1QJP A;  3GP6 A;  4FSP A;  4G76 A;  3VE1 A;  2W80 C;  3AA1 A;  1IZN A;  2W81 C;  3LK3 B;  1QJ8 A;  2KDY A;  1MM5 A;  4O3X B;  3SYB A;  4O3Y A;  5DL8 A;  2MNH A;  4RJW A;  4XNK A;  5JDP A;  1GFQ A;  3AA0 A;  1HXT A;  2ZFG A;  4F4B A;  3AA6 B;  4AYM C;  4G75 A;  3AA7 B;  4O3Z A;  4RJX A;  3QRA A;  2K4T A;  4GHB A;  5DL5 A;  2XE1 A;  1Q9F A;  4FT6 A;  3AAE A;  1MM4 A;  4XNL A;  4E1T A;  5AFU L;  5GV0 A;  1GFO A;  4RLC A;  2Y7S A;  4FRX A;  5IYU A;  1OSM A;  4GCP A;  4FZM A;  3V8U A;  5DL6 A;  3HWB A;  2KXP A;  2KC0 A;  3O0E A;  1ZHW A;  4AYN A;  1BH3 A;  3LK4 2;  4LSF A;  1BXW A;  4RL9 A;  4KR8 A;  2Y2X A;  4AZL A;  4B61 A;  4D64 A;  3SY7 A;  3WI5 A;  4FSO A;  3LK2 A;  3KVD D;  1ZHX A;  2X27 X;  5ADX L;  2YPV A;  3DA3 A;  1ZHZ A;  3A2S X;  3AA1 B;  4LSE A;  3T24 A;  2J1N A;  4JCH A;  2F1T A;  3NSG A;  2LFU A;  1IZN B;  4C69 X;  4AKM A;  2POR A;  3T20 A;  4O49 A;  4O3W A;  2ODJ A;  4FOZ A;  3AAA A;  3AA0 B;  2FGQ X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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