1I5IA

The c18s mutant of bovine (gamma-b)-crystallin
Total Genus 44
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
173
structure length
173
Chain Sequence
GKITFYEDRGFQGHCYESSSDCPNLQPYFSRCNSIRVDSGCWMLYERPNYQGHQYFLRRGDYPDYQQWMGFNDSIRSCRLIPQHTGTFRMRIYERDDFRGQMSEITDDCPSLQDRFHLTEVHSLNVLEGSWVLYEMPSYRGRQYLLRPGEYRRYLDWGAMNAKVGSLRRVMDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural protein
molecule keywords (GAMMA-B) CRYSTALLIN
publication title Enhanced crystallization of the Cys18 to Ser mutant of bovine gammaB crystallin.
pubmed doi rcsb
source organism Bos taurus
total genus 44
structure length 173
sequence length 173
ec nomenclature
pdb deposition date 2001-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1i5iA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1i5iA01
2KFBA 4NI3A 4W9BA 3SO1A 2JDFA 1ZIQA 1GCSA 4PSPA 1HA4A 2B1OA 2M3TA 1AG4A 1H4AX 3SNZA 1YTQA 1ELPA 1ZGTA 3ENUA 1ZIEA 2M3UA 3SNYA 2G98A 4W9AA 1I5IA 4IAUA 3ENTA 1HDFA 1AMMA 2NBRA 1E7NA 1NPSA 1OKIA 3CW3A 3SO0A 4EL6A 2BV2A 2DADA 1A5DA 1DSLA 3I9HA 2BB2A 2JDGA 3HZ2A 3IAJA 1M8UA 3LWKA 4GCRA 5HT8A 2V2UA 4PSRA 1GAMA 3HZBA 5HT9A 2A5MA 2K1WA 1ZIRA 1PRSA 3QK3A 1PRRA 1ZWOA 4FD9A 4JGFA 1BLBA 4AKAA 1YHPA 2K1XA 1BD7A 1A7HA 1HK0X 2M3CA 4GR7A 1ZWMA 2KP5A 1A45A
chains in the Genus database with same CATH superfamily
2KFBA 1ZIQA 2M3TA 1AG4A 1YTQA 3ENUA 2G98A 1AMMA 2BV2A 2DADA 1F53A 3HZ2A 4GCRA 2V2UA 4PSRA 5HT9A 1BLBA 2K1XA 2KP5A 4NI3A 3SO1A 2JDFA 1GCSA 4PSPA 1ZGTA 1ELPA 4W9AA 1C01A 4IAUA 3SO0A 1OKIA 1A5DA 2JDGA 1GAMA 3HZBA 3QK3A 1PRRA 1YHPA 1ZWMA 4W9BA 3SNZA 1HA4A 2B1OA 1H4AX 1ZIEA 1BHUA 1GH5A 1HDFA 2NBRA 1NPSA 3CW3A 4EL6A 1G6EA 1DSLA 3I9HA 3LWKA 1ZIRA 4FD9A 4AKAA 1BD7A 4GR7A 1A45A 3SNYA 2M3UA 1WKTA 1I5IA 3ENTA 3UJZA 1E7NA 3IAJA 1M8UA 5HT8A 2A5MA 2K1WA 1PRSA 1ZWOA 4JGFA 1A7HA 1HK0X 2M3CA 2BB2A
chains in the Genus database with same CATH topology
2KFBA 4NI3A 4W9BA 3SO1A 2JDFA 1ZIQA 1GCSA 4PSPA 1HA4A 2B1OA 2M3TA 1AG4A 1H4AX 3SNZA 1YTQA 1ELPA 1ZGTA 3ENUA 1ZIEA 2M3UA 3SNYA 2G98A 4W9AA 1I5IA 4IAUA 3ENTA 1HDFA 1AMMA 2NBRA 1E7NA 1NPSA 1OKIA 3CW3A 3SO0A 4EL6A 2BV2A 2DADA 1A5DA 1DSLA 3I9HA 2BB2A 2JDGA 3HZ2A 3IAJA 1M8UA 3LWKA 4GCRA 5HT8A 2V2UA 4PSRA 1GAMA 3HZBA 5HT9A 2A5MA 2K1WA 1ZIRA 1PRSA 3QK3A 1PRRA 1ZWOA 4FD9A 4JGFA 1BLBA 4AKAA 1YHPA 2K1XA 1BD7A 1A7HA 1HK0X 2M3CA 4GR7A 1ZWMA 2KP5A 1A45A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KFB A;  4NI3 A;  4W9B A;  3SO1 A;  2JDF A;  1ZIQ A;  1GCS A;  4PSP A;  1HA4 A;  2B1O A;  2M3T A;  1AG4 A;  1H4A X;  3SNZ A;  1YTQ A;  1ELP A;  1ZGT A;  3ENU A;  1ZIE A;  2M3U A;  3SNY A;  2G98 A;  4W9A A;  1I5I A;  4IAU A;  3ENT A;  1HDF A;  1AMM A;  2NBR A;  1E7N A;  1NPS A;  1OKI A;  3CW3 A;  3SO0 A;  4EL6 A;  2BV2 A;  2DAD A;  1A5D A;  1DSL A;  3I9H A;  2BB2 A;  2JDG A;  3HZ2 A;  3IAJ A;  1M8U A;  3LWK A;  4GCR A;  5HT8 A;  2V2U A;  4PSR A;  1GAM A;  3HZB A;  5HT9 A;  2A5M A;  2K1W A;  1ZIR A;  1PRS A;  3QK3 A;  1PRR A;  1ZWO A;  4FD9 A;  4JGF A;  1BLB A;  4AKA A;  1YHP A;  2K1X A;  1BD7 A;  1A7H A;  1HK0 X;  2M3C A;  4GR7 A;  1ZWM A;  2KP5 A;  1A45 A; 
#chains in the Genus database with same CATH topology
 2KFB A;  1ZIQ A;  2M3T A;  1AG4 A;  1YTQ A;  3ENU A;  2G98 A;  1AMM A;  2BV2 A;  2DAD A;  1F53 A;  3HZ2 A;  4GCR A;  2V2U A;  4PSR A;  5HT9 A;  1BLB A;  2K1X A;  2KP5 A;  4NI3 A;  3SO1 A;  2JDF A;  1GCS A;  4PSP A;  1ZGT A;  1ELP A;  4W9A A;  1C01 A;  4IAU A;  3SO0 A;  1OKI A;  1A5D A;  2JDG A;  1GAM A;  3HZB A;  3QK3 A;  1PRR A;  1YHP A;  1ZWM A;  4W9B A;  3SNZ A;  1HA4 A;  2B1O A;  1H4A X;  1ZIE A;  1BHU A;  1GH5 A;  1HDF A;  2NBR A;  1NPS A;  3CW3 A;  4EL6 A;  1G6E A;  1DSL A;  3I9H A;  3LWK A;  1ZIR A;  4FD9 A;  4AKA A;  1BD7 A;  4GR7 A;  1A45 A;  3SNY A;  2M3U A;  1WKT A;  1I5I A;  3ENT A;  3UJZ A;  1E7N A;  3IAJ A;  1M8U A;  5HT8 A;  2A5M A;  2K1W A;  1PRS A;  1ZWO A;  4JGF A;  1A7H A;  1HK0 X;  2M3C A;  2BB2 A; 
#chains in the Genus database with same CATH homology
 2KFB A;  4NI3 A;  4W9B A;  3SO1 A;  2JDF A;  1ZIQ A;  1GCS A;  4PSP A;  1HA4 A;  2B1O A;  2M3T A;  1AG4 A;  1H4A X;  3SNZ A;  1YTQ A;  1ELP A;  1ZGT A;  3ENU A;  1ZIE A;  2M3U A;  3SNY A;  2G98 A;  4W9A A;  1I5I A;  4IAU A;  3ENT A;  1HDF A;  1AMM A;  2NBR A;  1E7N A;  1NPS A;  1OKI A;  3CW3 A;  3SO0 A;  4EL6 A;  2BV2 A;  2DAD A;  1A5D A;  1DSL A;  3I9H A;  2BB2 A;  2JDG A;  3HZ2 A;  3IAJ A;  1M8U A;  3LWK A;  4GCR A;  5HT8 A;  2V2U A;  4PSR A;  1GAM A;  3HZB A;  5HT9 A;  2A5M A;  2K1W A;  1ZIR A;  1PRS A;  3QK3 A;  1PRR A;  1ZWO A;  4FD9 A;  4JGF A;  1BLB A;  4AKA A;  1YHP A;  2K1X A;  1BD7 A;  1A7H A;  1HK0 X;  2M3C A;  4GR7 A;  1ZWM A;  2KP5 A;  1A45 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...