1I5UA

Solution structure of cytochrome b5 triple mutant (e48a/e56a/d60a)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
82
structure length
82
Chain Sequence
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHSTDARELSKTFIIGELHPDDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME B5
publication title Effects of charged amino-acid mutation on the solution structure of cytochrome b(5) and binding between cytochrome b(5) and cytochrome c.
pubmed doi rcsb
source organism Bos taurus
total genus 28
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2001-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1i5uA00
1M2IA 1CXYA 2AXXA 1DO9A 1J0QA 1FCBA 1ES1A 1B5AA 3KS0A 1NX7A 1SOXA 1LCOA 4HINA 1U9MA 1JEXA 1BLVA 1EUEA 1AQAA 1AW3A 2OZ0A 1MNYA 1CYOA 1LJ0A 1HKOA 3LF5A 1ICCA 1IB7A 1LQXA 1IETA 1M59A 1AXXA 3MUSA 1IEUA 1F04A 3X33A 1BFXA 1EHBA 1I87A 1T0GA 1B5BA 1AWPA 1I5UA 3X35A 1U9UA 1B5MA 1M2MA 1X3XA 3NERA 4HILA 4X8YA 1LTDA 1I8CA 1MJ4A 4B8NA 3OZZB 3X32A 1M20A 1LR6A 2KEOA 1KBIA 1LDCA 1J03A 3X34A 1SH4A 2I89A 2M33A 2IBJA 1F03A 2I96A
chains in the Genus database with same CATH superfamily
1M2IA 1CXYA 2AXXA 1DO9A 1J0QA 1FCBA 1ES1A 1B5AA 3KS0A 1NX7A 1SOXA 1LCOA 4HINA 1U9MA 1JEXA 1BLVA 1EUEA 1AQAA 1AW3A 2OZ0A 1MNYA 1CYOA 1LJ0A 1HKOA 3LF5A 1ICCA 1IB7A 1LQXA 1IETA 1M59A 1AXXA 3MUSA 1IEUA 1F04A 3X33A 1BFXA 1EHBA 1I87A 1T0GA 1B5BA 1AWPA 1I5UA 3X35A 1U9UA 1B5MA 1M2MA 1X3XA 3NERA 4HILA 4X8YA 1LTDA 1I8CA 1MJ4A 4B8NA 3OZZB 3X32A 1M20A 1LR6A 2KEOA 1KBIA 1LDCA 1J03A 3X34A 1SH4A 2I89A 2M33A 2IBJA 1F03A 2I96A
chains in the Genus database with same CATH topology
1M2IA 1CXYA 2AXXA 1DO9A 1J0QA 1FCBA 1ES1A 1B5AA 3KS0A 1NX7A 1SOXA 1LCOA 4HINA 1U9MA 1JEXA 1BLVA 1EUEA 1AQAA 1AW3A 2OZ0A 1MNYA 1CYOA 1LJ0A 1HKOA 3LF5A 1ICCA 1IB7A 1LQXA 1IETA 1M59A 1AXXA 3MUSA 1IEUA 1F04A 3X33A 1BFXA 1EHBA 1I87A 1T0GA 1B5BA 1AWPA 1I5UA 3X35A 1U9UA 1B5MA 1M2MA 1X3XA 3NERA 4HILA 4X8YA 1LTDA 1I8CA 1MJ4A 4B8NA 3OZZB 3X32A 1M20A 1LR6A 2KEOA 1KBIA 1LDCA 1J03A 3X34A 1SH4A 2I89A 2M33A 2IBJA 1F03A 2I96A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M2I A;  1CXY A;  2AXX A;  1DO9 A;  1J0Q A;  1FCB A;  1ES1 A;  1B5A A;  3KS0 A;  1NX7 A;  1SOX A;  1LCO A;  4HIN A;  1U9M A;  1JEX A;  1BLV A;  1EUE A;  1AQA A;  1AW3 A;  2OZ0 A;  1MNY A;  1CYO A;  1LJ0 A;  1HKO A;  3LF5 A;  1ICC A;  1IB7 A;  1LQX A;  1IET A;  1M59 A;  1AXX A;  3MUS A;  1IEU A;  1F04 A;  3X33 A;  1BFX A;  1EHB A;  1I87 A;  1T0G A;  1B5B A;  1AWP A;  1I5U A;  3X35 A;  1U9U A;  1B5M A;  1M2M A;  1X3X A;  3NER A;  4HIL A;  4X8Y A;  1LTD A;  1I8C A;  1MJ4 A;  4B8N A;  3OZZ B;  3X32 A;  1M20 A;  1LR6 A;  2KEO A;  1KBI A;  1LDC A;  1J03 A;  3X34 A;  1SH4 A;  2I89 A;  2M33 A;  2IBJ A;  1F03 A;  2I96 A; 
#chains in the Genus database with same CATH topology
 1M2I A;  1CXY A;  2AXX A;  1DO9 A;  1J0Q A;  1FCB A;  1ES1 A;  1B5A A;  3KS0 A;  1NX7 A;  1SOX A;  1LCO A;  4HIN A;  1U9M A;  1JEX A;  1BLV A;  1EUE A;  1AQA A;  1AW3 A;  2OZ0 A;  1MNY A;  1CYO A;  1LJ0 A;  1HKO A;  3LF5 A;  1ICC A;  1IB7 A;  1LQX A;  1IET A;  1M59 A;  1AXX A;  3MUS A;  1IEU A;  1F04 A;  3X33 A;  1BFX A;  1EHB A;  1I87 A;  1T0G A;  1B5B A;  1AWP A;  1I5U A;  3X35 A;  1U9U A;  1B5M A;  1M2M A;  1X3X A;  3NER A;  4HIL A;  4X8Y A;  1LTD A;  1I8C A;  1MJ4 A;  4B8N A;  3OZZ B;  3X32 A;  1M20 A;  1LR6 A;  2KEO A;  1KBI A;  1LDC A;  1J03 A;  3X34 A;  1SH4 A;  2I89 A;  2M33 A;  2IBJ A;  1F03 A;  2I96 A; 
#chains in the Genus database with same CATH homology
 1M2I A;  1CXY A;  2AXX A;  1DO9 A;  1J0Q A;  1FCB A;  1ES1 A;  1B5A A;  3KS0 A;  1NX7 A;  1SOX A;  1LCO A;  4HIN A;  1U9M A;  1JEX A;  1BLV A;  1EUE A;  1AQA A;  1AW3 A;  2OZ0 A;  1MNY A;  1CYO A;  1LJ0 A;  1HKO A;  3LF5 A;  1ICC A;  1IB7 A;  1LQX A;  1IET A;  1M59 A;  1AXX A;  3MUS A;  1IEU A;  1F04 A;  3X33 A;  1BFX A;  1EHB A;  1I87 A;  1T0G A;  1B5B A;  1AWP A;  1I5U A;  3X35 A;  1U9U A;  1B5M A;  1M2M A;  1X3X A;  3NER A;  4HIL A;  4X8Y A;  1LTD A;  1I8C A;  1MJ4 A;  4B8N A;  3OZZ B;  3X32 A;  1M20 A;  1LR6 A;  2KEO A;  1KBI A;  1LDC A;  1J03 A;  3X34 A;  1SH4 A;  2I89 A;  2M33 A;  2IBJ A;  1F03 A;  2I96 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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