1I6HL

Rna polymerase ii elongation complex
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
46
structure length
46
Chain Sequence
b'ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR'

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3'
publication title Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Transcription/dna-rna hybrid
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2001-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 1i6hL00
2PMZP 1Y1VL 4A3GL 2YU9L 2JA8L 2JA6L 3HOYL 3GTGL 1TWHL 3S17L 4A3BL 3RZOL 4C3HL 4A3FL 1TWAL 2JA5L 4A3EL 4BXXL 3M4OL 1TWGL 5IP9L 3K7AL 4BY7L 3GTKL 5FJ8L 2E2HL 4C3IL 4Y52L 3FKIL 3GTOL 2JA7L 3S1RL 3GTJL 4A3JL 4AYBP 5IYBL 5M3ML 1K83L 4BBRL 4C3JL 2NVYL 5FLML 2VUML 4A3CL 1TWCL 4A3ML 3PO3L 5C44L 2NVTL 3HOVL 5IP7L 3HOUL 2R7ZL 1WCML 3H0GL 3HOZL 1R9TL 5M3FL 4Y7NL 2WB1P 3RZDL 3M3YL 4A93L 3PO2L 2Y0SP 1I6HL 2B63L 5C4XL 2E2IL 3S16L 3S2HL 3H3VM 2NVQL 4BY1L 2R92L 4A3KL 2E2JL 3S2DL 2R93L 3I4ML 5IYCL 4A3DL 5M5YL 4C2M1 3GTQL 3S1QL 5M5XL 3HOWL 3S14L 2WAQP 5C4JL 4A3IL 1TWFL 3S1NL 3GTPL 4X6AL 5M5WL 3S1ML 3S15L 1SFOL 1I3QL 3I4NL 3HOXL 5IYDL 4A3LL 3GTML 4QIWP 3HKZP 2NVXL 3GTLL 4BBSL 3CQZL 1I50L 5C3EL 1Y1WL
chains in the Genus database with same CATH superfamily
2PMZP 1VCXA 4U671 4A3BL 3PL5A 1Z92B 3PKJA 3WWNB 3RZOL 2Z3RB 2C6AA 4C3HL 4A3FL 2J9UB 2HR5A 5MGNA 1QQTA 2RFKB 4BY7L 2VL6A 5K2ME 3KYXA 3KYYA 3MQKB 3WWLA 2H12A 4A3JL 1FHMA 4BBRL 4C3JL 1R0HA 5FLML 1C09A 2A69D 1LTLA 1CADA 2R7ZL 1B2OA 4LHLA 5M3FL 4Y7NL 6RXNA 3PIO1 4A93L 5GAHc 4AI3A 2CKAA 3PO2L 5AI2A 3B0AB 3LWVB 1B2JA 2B63L 3H3VM 4BY1L 2PSMC 2R93L 1BE7A 3P2AA 4AI2A 3RZTA 1BFYA 3PZAA 1R0IA 5M5WL 3S15L 1I3QL 5GAGc 3HOXL 4V196 1BQ9A 3GTML 3LWPB 1T9OA 3LWOB 3GTLL 5EINC 1IRNA 3B08B 1RDVA 2PYAA 3J7Y1 3KYUA 2KKDA 1S24A 3GTGL 1TWHL 4RXNA 2BE5D 2XJUA 3RZ6A 5DM61 3P8BA 2AQCA 1B13A 1PFVA 2L0ZA 1TWAL 1PZXA 4A3EL 2AUSB 2A68D 1FHHA 1YK5A 1RB9A 2NYDA 3GTKL 1RYQA 5FJ8L 2E2HL 4C3IL 4Y52L 3LPEB 3GTOL 1YV1A 4AHXA 1LKPA 1NXEA 3S1RL 1RYTA 2KN9A 1K83L 3NFPI 2XJRA 5DM71 1DX8A 1DVBA 1SMUA 3PO3L 4JAGA 3MPSA 2NVTL 3HOVL 5MF6A 1WCML 3VPBE 3SS2A 1F4LA 3M3YL 2WB1P 3H99A 2JI3A 7RXNA 5JVG1 1CAAA 2Y0SP 5MLC3 2E2IL 3S16L 3QQCE 3I4ML 2DSXA 5M5YL 2M4YA 5MFZA 2XJVA 1NNQA 1YUXA 3S1QL 4TPUA 3HOWL 2V3BB 2WAQP 5C4JL 4A3IL 3KYVA 4AR6A 3PWFA 2M6OA 3GTPL 4X6AL 3S1ML 3IU3I 4G6BA 5IYDL 4A3LL 1T9PA 4ZN1B 2B5ID 1I50L 4UY81 5C3EL 3FDJA 4A3GL 2YU9L 5RXNA 3H9CA 2JA6L 1OWCA 3S17L 2APOB 1QCVA 2PVXA 2PVEA 1T9QA 1PFYA 2JA5L 2ZIXA 1SMMA 1RWDA 1H7VA 3KYWA 3K7AL 1E8JA 2MS3A 5AI3A 2JA7L 2V0FA 1PFUA 5IY0A 5IYBL 5M3ML 3HJYB 2XJPA 2XJQA 1TWCL 2JI2A 3ZG6A 1IROA 1JYBA 1SMWA 4POFA 1YUZA 3H97A 3RZDL 4LHNA 1I6HL 4AR4A 5C4XL 1ODHA 3S2HL 2NVQL 2R92L 1NXGA 4A3KL 3S2DL 2CR8A 2RDVA 4A3DL 2HVYC 4JAFA 4C2M1 5M5XL 3S14L 2K2DA 5MFPA 1TWFL 3S1NL 2JI1A 2M6PA 3QVDA 1SFOL 4XGHA 3HAXC 4QIWP 4BBSL 4AHWA 3CQZL 2XJSA 3RYGA 5GAEc 1Y1WL 4TVMA 1Y1VL 3JR7A 4AI1A 2JA8L 3HOYL 4XXBB 4AHYA 1R0FA 5AN9H 1R0GA 4B8CD 3LNLA 2CKCA 1OWBA 1S30A 2Z3QB 4WFN1 5EIOC 4BXXL 3M4OL 1TWGL 4JADA 5IP9L 1IW7D 1YK4A 2ERSA 1LKMA 2A6ED 3FKIL 3GTJL 3H9BA 4AHZA 2XJTA 4AYBP 4ZN3B 3K35A 2NVYL 1BRFA 1P7PA 5GADc 2VUML 4A3CL 4A3ML 2LCQA 2M4VA 3LWRB 1IU6A 5C44L 2EY4E 4K9FA 5IP7L 8RXNA 3HOUL 4AR5A 3LWQB 3H0GL 2C6BA 4JAEA 3MSUA 3HOZL 2O5JD 1R9TL 1S2ZA 5JVH1 3PIP1 2A6HD 2AYJA 4YWMA 1VZIA 2GMGA 1LKOA 4AI0A 3J7Z1 2PPTA 2E2JL 2ERJA 5IYCL 3HJWB 2V0EA 1PFWA 3GTQL 4AR3A 1QYBA 4YWLA 1RDGA 4ME3A 3PKIA 5H1Sc 1IU5A 4POGA 4GS7D 1B71A 1R0JA 4E6YA 1BQ8A 3I4NL 1ZRPA 3HKZP 2NVXL 1VZGA 1VZHA 3A44A 2QL0A 1WJVA
chains in the Genus database with same CATH topology
2PMZP 1Y1VL 4A3GL 2YU9L 2JA8L 2JA6L 3HOYL 3GTGL 1TWHL 3S17L 4A3BL 3RZOL 4C3HL 4A3FL 1TWAL 2JA5L 4A3EL 4BXXL 3M4OL 1TWGL 5IP9L 3K7AL 4BY7L 3GTKL 5FJ8L 2E2HL 4C3IL 4Y52L 3FKIL 3GTOL 2JA7L 3S1RL 3GTJL 4A3JL 4AYBP 5IYBL 5M3ML 1K83L 4BBRL 4C3JL 2NVYL 5FLML 2VUML 4A3CL 1TWCL 4A3ML 3PO3L 5C44L 2NVTL 3HOVL 5IP7L 3HOUL 2R7ZL 1WCML 3H0GL 3HOZL 1R9TL 5M3FL 4Y7NL 2WB1P 3RZDL 3M3YL 4A93L 3PO2L 2Y0SP 1I6HL 2B63L 5C4XL 2E2IL 3S16L 3S2HL 3H3VM 2NVQL 4BY1L 2R92L 4A3KL 2E2JL 3S2DL 2R93L 3I4ML 5IYCL 4A3DL 5M5YL 4C2M1 3GTQL 3S1QL 5M5XL 3HOWL 3S14L 2WAQP 5C4JL 4A3IL 1TWFL 3S1NL 3GTPL 4X6AL 5M5WL 3S1ML 3S15L 1SFOL 1I3QL 3I4NL 3HOXL 5IYDL 4A3LL 3GTML 4QIWP 3HKZP 2NVXL 3GTLL 4BBSL 3CQZL 1I50L 5C3EL 1Y1WL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PMZ P;  1Y1V L;  4A3G L;  2YU9 L;  2JA8 L;  2JA6 L;  3HOY L;  3GTG L;  1TWH L;  3S17 L;  4A3B L;  3RZO L;  4C3H L;  4A3F L;  1TWA L;  2JA5 L;  4A3E L;  4BXX L;  3M4O L;  1TWG L;  5IP9 L;  3K7A L;  4BY7 L;  3GTK L;  5FJ8 L;  2E2H L;  4C3I L;  4Y52 L;  3FKI L;  3GTO L;  2JA7 L;  3S1R L;  3GTJ L;  4A3J L;  4AYB P;  5IYB L;  5M3M L;  1K83 L;  4BBR L;  4C3J L;  2NVY L;  5FLM L;  2VUM L;  4A3C L;  1TWC L;  4A3M L;  3PO3 L;  5C44 L;  2NVT L;  3HOV L;  5IP7 L;  3HOU L;  2R7Z L;  1WCM L;  3H0G L;  3HOZ L;  1R9T L;  5M3F L;  4Y7N L;  2WB1 P;  3RZD L;  3M3Y L;  4A93 L;  3PO2 L;  2Y0S P;  1I6H L;  2B63 L;  5C4X L;  2E2I L;  3S16 L;  3S2H L;  3H3V M;  2NVQ L;  4BY1 L;  2R92 L;  4A3K L;  2E2J L;  3S2D L;  2R93 L;  3I4M L;  5IYC L;  4A3D L;  5M5Y L;  4C2M 1;  3GTQ L;  3S1Q L;  5M5X L;  3HOW L;  3S14 L;  2WAQ P;  5C4J L;  4A3I L;  1TWF L;  3S1N L;  3GTP L;  4X6A L;  5M5W L;  3S1M L;  3S15 L;  1SFO L;  1I3Q L;  3I4N L;  3HOX L;  5IYD L;  4A3L L;  3GTM L;  4QIW P;  3HKZ P;  2NVX L;  3GTL L;  4BBS L;  3CQZ L;  1I50 L;  5C3E L;  1Y1W L; 
#chains in the Genus database with same CATH topology
 2PMZ P;  1VCX A;  4U67 1;  4A3B L;  3PL5 A;  1Z92 B;  3PKJ A;  3WWN B;  3RZO L;  2Z3R B;  2C6A A;  4C3H L;  4A3F L;  2J9U B;  2HR5 A;  5MGN A;  1QQT A;  2RFK B;  4BY7 L;  2VL6 A;  5K2M E;  3KYX A;  3KYY A;  3MQK B;  3WWL A;  2H12 A;  4A3J L;  1FHM A;  4BBR L;  4C3J L;  1R0H A;  5FLM L;  1C09 A;  2A69 D;  1LTL A;  1CAD A;  2R7Z L;  1B2O A;  4LHL A;  5M3F L;  4Y7N L;  6RXN A;  3PIO 1;  4A93 L;  5GAH c;  4AI3 A;  2CKA A;  3PO2 L;  5AI2 A;  3B0A B;  3LWV B;  1B2J A;  2B63 L;  3H3V M;  4BY1 L;  2PSM C;  2R93 L;  1BE7 A;  3P2A A;  4AI2 A;  3RZT A;  1BFY A;  3PZA A;  1R0I A;  5M5W L;  3S15 L;  1I3Q L;  5GAG c;  3HOX L;  4V19 6;  1BQ9 A;  3GTM L;  3LWP B;  1T9O A;  3LWO B;  3GTL L;  5EIN C;  1IRN A;  3B08 B;  1RDV A;  2PYA A;  3J7Y 1;  3KYU A;  2KKD A;  1S24 A;  3GTG L;  1TWH L;  4RXN A;  2BE5 D;  2XJU A;  3RZ6 A;  5DM6 1;  3P8B A;  2AQC A;  1B13 A;  1PFV A;  2L0Z A;  1TWA L;  1PZX A;  4A3E L;  2AUS B;  2A68 D;  1FHH A;  1YK5 A;  1RB9 A;  2NYD A;  3GTK L;  1RYQ A;  5FJ8 L;  2E2H L;  4C3I L;  4Y52 L;  3LPE B;  3GTO L;  1YV1 A;  4AHX A;  1LKP A;  1NXE A;  3S1R L;  1RYT A;  2KN9 A;  1K83 L;  3NFP I;  2XJR A;  5DM7 1;  1DX8 A;  1DVB A;  1SMU A;  3PO3 L;  4JAG A;  3MPS A;  2NVT L;  3HOV L;  5MF6 A;  1WCM L;  3VPB E;  3SS2 A;  1F4L A;  3M3Y L;  2WB1 P;  3H99 A;  2JI3 A;  7RXN A;  5JVG 1;  1CAA A;  2Y0S P;  5MLC 3;  2E2I L;  3S16 L;  3QQC E;  3I4M L;  2DSX A;  5M5Y L;  2M4Y A;  5MFZ A;  2XJV A;  1NNQ A;  1YUX A;  3S1Q L;  4TPU A;  3HOW L;  2V3B B;  2WAQ P;  5C4J L;  4A3I L;  3KYV A;  4AR6 A;  3PWF A;  2M6O A;  3GTP L;  4X6A L;  3S1M L;  3IU3 I;  4G6B A;  5IYD L;  4A3L L;  1T9P A;  4ZN1 B;  2B5I D;  1I50 L;  4UY8 1;  5C3E L;  3FDJ A;  4A3G L;  2YU9 L;  5RXN A;  3H9C A;  2JA6 L;  1OWC A;  3S17 L;  2APO B;  1QCV A;  2PVX A;  2PVE A;  1T9Q A;  1PFY A;  2JA5 L;  2ZIX A;  1SMM A;  1RWD A;  1H7V A;  3KYW A;  3K7A L;  1E8J A;  2MS3 A;  5AI3 A;  2JA7 L;  2V0F A;  1PFU A;  5IY0 A;  5IYB L;  5M3M L;  3HJY B;  2XJP A;  2XJQ A;  1TWC L;  2JI2 A;  3ZG6 A;  1IRO A;  1JYB A;  1SMW A;  4POF A;  1YUZ A;  3H97 A;  3RZD L;  4LHN A;  1I6H L;  4AR4 A;  5C4X L;  1ODH A;  3S2H L;  2NVQ L;  2R92 L;  1NXG A;  4A3K L;  3S2D L;  2CR8 A;  2RDV A;  4A3D L;  2HVY C;  4JAF A;  4C2M 1;  5M5X L;  3S14 L;  2K2D A;  5MFP A;  1TWF L;  3S1N L;  2JI1 A;  2M6P A;  3QVD A;  1SFO L;  4XGH A;  3HAX C;  4QIW P;  4BBS L;  4AHW A;  3CQZ L;  2XJS A;  3RYG A;  5GAE c;  1Y1W L;  4TVM A;  1Y1V L;  3JR7 A;  4AI1 A;  2JA8 L;  3HOY L;  4XXB B;  4AHY A;  1R0F A;  5AN9 H;  1R0G A;  4B8C D;  3LNL A;  2CKC A;  1OWB A;  1S30 A;  2Z3Q B;  4WFN 1;  5EIO C;  4BXX L;  3M4O L;  1TWG L;  4JAD A;  5IP9 L;  1IW7 D;  1YK4 A;  2ERS A;  1LKM A;  2A6E D;  3FKI L;  3GTJ L;  3H9B A;  4AHZ A;  2XJT A;  4AYB P;  4ZN3 B;  3K35 A;  2NVY L;  1BRF A;  1P7P A;  5GAD c;  2VUM L;  4A3C L;  4A3M L;  2LCQ A;  2M4V A;  3LWR B;  1IU6 A;  5C44 L;  2EY4 E;  4K9F A;  5IP7 L;  8RXN A;  3HOU L;  4AR5 A;  3LWQ B;  3H0G L;  2C6B A;  4JAE A;  3MSU A;  3HOZ L;  2O5J D;  1R9T L;  1S2Z A;  5JVH 1;  3PIP 1;  2A6H D;  2AYJ A;  4YWM A;  1VZI A;  2GMG A;  1LKO A;  4AI0 A;  3J7Z 1;  2PPT A;  2E2J L;  2ERJ A;  5IYC L;  3HJW B;  2V0E A;  1PFW A;  3GTQ L;  4AR3 A;  1QYB A;  4YWL A;  1RDG A;  4ME3 A;  3PKI A;  5H1S c;  1IU5 A;  4POG A;  4GS7 D;  1B71 A;  1R0J A;  4E6Y A;  1BQ8 A;  3I4N L;  1ZRP A;  3HKZ P;  2NVX L;  1VZG A;  1VZH A;  3A44 A;  2QL0 A;  1WJV A; 
#chains in the Genus database with same CATH homology
 2PMZ P;  1Y1V L;  4A3G L;  2YU9 L;  2JA8 L;  2JA6 L;  3HOY L;  3GTG L;  1TWH L;  3S17 L;  4A3B L;  3RZO L;  4C3H L;  4A3F L;  1TWA L;  2JA5 L;  4A3E L;  4BXX L;  3M4O L;  1TWG L;  5IP9 L;  3K7A L;  4BY7 L;  3GTK L;  5FJ8 L;  2E2H L;  4C3I L;  4Y52 L;  3FKI L;  3GTO L;  2JA7 L;  3S1R L;  3GTJ L;  4A3J L;  4AYB P;  5IYB L;  5M3M L;  1K83 L;  4BBR L;  4C3J L;  2NVY L;  5FLM L;  2VUM L;  4A3C L;  1TWC L;  4A3M L;  3PO3 L;  5C44 L;  2NVT L;  3HOV L;  5IP7 L;  3HOU L;  2R7Z L;  1WCM L;  3H0G L;  3HOZ L;  1R9T L;  5M3F L;  4Y7N L;  2WB1 P;  3RZD L;  3M3Y L;  4A93 L;  3PO2 L;  2Y0S P;  1I6H L;  2B63 L;  5C4X L;  2E2I L;  3S16 L;  3S2H L;  3H3V M;  2NVQ L;  4BY1 L;  2R92 L;  4A3K L;  2E2J L;  3S2D L;  2R93 L;  3I4M L;  5IYC L;  4A3D L;  5M5Y L;  4C2M 1;  3GTQ L;  3S1Q L;  5M5X L;  3HOW L;  3S14 L;  2WAQ P;  5C4J L;  4A3I L;  1TWF L;  3S1N L;  3GTP L;  4X6A L;  5M5W L;  3S1M L;  3S15 L;  1SFO L;  1I3Q L;  3I4N L;  3HOX L;  5IYD L;  4A3L L;  3GTM L;  4QIW P;  3HKZ P;  2NVX L;  3GTL L;  4BBS L;  3CQZ L;  1I50 L;  5C3E L;  1Y1W L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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