1I71A

High resolution crystal structure of apolipoprotein(a) kringle iv type 7: insights into ligand binding
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
83
structure length
83
Chain Sequence
DCYHGDGQSYRGSFSTTVTGRTCQSWSSMTPHWHQRTTEYYPNGGLTRNYCRNPDAEIRPWCYTMDPSVRWEYCNLTQCPVME
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords APOLIPOPROTEIN(A)
publication title High-resolution crystal structure of apolipoprotein(a) kringle IV type 7: insights into ligand binding.
pubmed doi rcsb
source organism Homo sapiens
total genus 21
structure length 83
sequence length 83
ec nomenclature ec 3.4.21.-:
pdb deposition date 2001-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 1i71A00
3KIVA 1NK1A 4BVCA 1A0HA 4O03A 4HZHA 2PK4A 2I9AA 2KNFA 1PK2A 2DOHX 5CP9A 2DOIA 1HPJA 5HPGA 2QJ2A 1PMKA 4DURA 2L0SA 5CS5A 2HPPP 3BT1A 3E6PL 4NZQA 1PKRA 4BVWA 1I71A 3NXPA 2PF1A 2FD6A 2K4RA 5CS9A 1NL2A 4CIKA 4IUAA 5CSQA 1NL1A 2KJ4A 1URKA 5CT3A 1KRNA 4BV7A 4A5TS 1JFNA 2K51A 3U73A 2HPQP 1KIVA 3K65A 2SPTA 5CS3A 2PF2A 2FEBA 1KDUA 3HN4A 5COEA 3MKPA 4BVDA 1HPKA 1GMOA 2I9BA 1TPKA 4BVVA 3BT2A 4KIVA 2QJ4A 1GMNA 1GP9A 1I5KA 1PK4A 1CEAA 1PMLA 5CT2A 1KI0A 5CS1A 4D3CA 4BV5A 3SP8A 3LAQA 1B2IA 1BHTA 5CT1A 1CEBA
chains in the Genus database with same CATH superfamily
3KIVA 1NK1A 4BVCA 1A0HA 4O03A 4HZHA 2PK4A 2I9AA 2KNFA 1PK2A 2DOHX 5CP9A 2DOIA 1HPJA 5HPGA 2QJ2A 1PMKA 4DURA 2L0SA 5CS5A 2HPPP 3BT1A 3E6PL 4NZQA 1PKRA 4BVWA 1I71A 3NXPA 2PF1A 2FD6A 2K4RA 5CS9A 1NL2A 4CIKA 4IUAA 5CSQA 1NL1A 2KJ4A 1URKA 5CT3A 1KRNA 4BV7A 4A5TS 1JFNA 2K51A 3U73A 2HPQP 1KIVA 3K65A 2SPTA 5CS3A 2PF2A 2FEBA 1KDUA 3HN4A 5COEA 3MKPA 4BVDA 1HPKA 1GMOA 2I9BA 1TPKA 4BVVA 3BT2A 4KIVA 2QJ4A 1GMNA 1GP9A 1I5KA 1PK4A 1CEAA 1PMLA 5CT2A 1KI0A 5CS1A 4D3CA 4BV5A 3SP8A 3LAQA 1B2IA 1BHTA 5CT1A 1CEBA
chains in the Genus database with same CATH topology
3KIVA 1NK1A 4BVCA 1A0HA 4O03A 4HZHA 2PK4A 2I9AA 2KNFA 1PK2A 2DOHX 5CP9A 2DOIA 1HPJA 5HPGA 2QJ2A 1PMKA 4DURA 2L0SA 5CS5A 2HPPP 3BT1A 3E6PL 4NZQA 1PKRA 4BVWA 1I71A 3NXPA 2PF1A 2FD6A 2K4RA 5CS9A 1NL2A 4CIKA 4IUAA 5CSQA 1NL1A 2KJ4A 1URKA 5CT3A 1KRNA 4BV7A 4A5TS 1JFNA 2K51A 3U73A 2HPQP 1KIVA 3K65A 2SPTA 5CS3A 2PF2A 2FEBA 1KDUA 3HN4A 5COEA 3MKPA 4BVDA 1HPKA 1GMOA 2I9BA 1TPKA 4BVVA 3BT2A 4KIVA 2QJ4A 1GMNA 1GP9A 1I5KA 1PK4A 1CEAA 1PMLA 5CT2A 1KI0A 5CS1A 4D3CA 4BV5A 3SP8A 3LAQA 1B2IA 1BHTA 5CT1A 1CEBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KIV A;  1NK1 A;  4BVC A;  1A0H A;  4O03 A;  4HZH A;  2PK4 A;  2I9A A;  2KNF A;  1PK2 A;  2DOH X;  5CP9 A;  2DOI A;  1HPJ A;  5HPG A;  2QJ2 A;  1PMK A;  4DUR A;  2L0S A;  5CS5 A;  2HPP P;  3BT1 A;  3E6P L;  4NZQ A;  1PKR A;  4BVW A;  1I71 A;  3NXP A;  2PF1 A;  2FD6 A;  2K4R A;  5CS9 A;  1NL2 A;  4CIK A;  4IUA A;  5CSQ A;  1NL1 A;  2KJ4 A;  1URK A;  5CT3 A;  1KRN A;  4BV7 A;  4A5T S;  1JFN A;  2K51 A;  3U73 A;  2HPQ P;  1KIV A;  3K65 A;  2SPT A;  5CS3 A;  2PF2 A;  2FEB A;  1KDU A;  3HN4 A;  5COE A;  3MKP A;  4BVD A;  1HPK A;  1GMO A;  2I9B A;  1TPK A;  4BVV A;  3BT2 A;  4KIV A;  2QJ4 A;  1GMN A;  1GP9 A;  1I5K A;  1PK4 A;  1CEA A;  1PML A;  5CT2 A;  1KI0 A;  5CS1 A;  4D3C A;  4BV5 A;  3SP8 A;  3LAQ A;  1B2I A;  1BHT A;  5CT1 A;  1CEB A; 
#chains in the Genus database with same CATH topology
 3KIV A;  1NK1 A;  4BVC A;  1A0H A;  4O03 A;  4HZH A;  2PK4 A;  2I9A A;  2KNF A;  1PK2 A;  2DOH X;  5CP9 A;  2DOI A;  1HPJ A;  5HPG A;  2QJ2 A;  1PMK A;  4DUR A;  2L0S A;  5CS5 A;  2HPP P;  3BT1 A;  3E6P L;  4NZQ A;  1PKR A;  4BVW A;  1I71 A;  3NXP A;  2PF1 A;  2FD6 A;  2K4R A;  5CS9 A;  1NL2 A;  4CIK A;  4IUA A;  5CSQ A;  1NL1 A;  2KJ4 A;  1URK A;  5CT3 A;  1KRN A;  4BV7 A;  4A5T S;  1JFN A;  2K51 A;  3U73 A;  2HPQ P;  1KIV A;  3K65 A;  2SPT A;  5CS3 A;  2PF2 A;  2FEB A;  1KDU A;  3HN4 A;  5COE A;  3MKP A;  4BVD A;  1HPK A;  1GMO A;  2I9B A;  1TPK A;  4BVV A;  3BT2 A;  4KIV A;  2QJ4 A;  1GMN A;  1GP9 A;  1I5K A;  1PK4 A;  1CEA A;  1PML A;  5CT2 A;  1KI0 A;  5CS1 A;  4D3C A;  4BV5 A;  3SP8 A;  3LAQ A;  1B2I A;  1BHT A;  5CT1 A;  1CEB A; 
#chains in the Genus database with same CATH homology
 3KIV A;  1NK1 A;  4BVC A;  1A0H A;  4O03 A;  4HZH A;  2PK4 A;  2I9A A;  2KNF A;  1PK2 A;  2DOH X;  5CP9 A;  2DOI A;  1HPJ A;  5HPG A;  2QJ2 A;  1PMK A;  4DUR A;  2L0S A;  5CS5 A;  2HPP P;  3BT1 A;  3E6P L;  4NZQ A;  1PKR A;  4BVW A;  1I71 A;  3NXP A;  2PF1 A;  2FD6 A;  2K4R A;  5CS9 A;  1NL2 A;  4CIK A;  4IUA A;  5CSQ A;  1NL1 A;  2KJ4 A;  1URK A;  5CT3 A;  1KRN A;  4BV7 A;  4A5T S;  1JFN A;  2K51 A;  3U73 A;  2HPQ P;  1KIV A;  3K65 A;  2SPT A;  5CS3 A;  2PF2 A;  2FEB A;  1KDU A;  3HN4 A;  5COE A;  3MKP A;  4BVD A;  1HPK A;  1GMO A;  2I9B A;  1TPK A;  4BVV A;  3BT2 A;  4KIV A;  2QJ4 A;  1GMN A;  1GP9 A;  1I5K A;  1PK4 A;  1CEA A;  1PML A;  5CT2 A;  1KI0 A;  5CS1 A;  4D3C A;  4BV5 A;  3SP8 A;  3LAQ A;  1B2I A;  1BHT A;  5CT1 A;  1CEB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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