1I77A

Cytochrome c3 from desulfovibrio desulfuricans essex 6
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
107
structure length
107
Chain Sequence
APAAPDKPLEFKGSQKTVMFPHAVHAKVECVTCHHQVDGKESFAKCGSSGCHDDLAGKQGEKSLYYVVHTKKELKHTNCIGCHSKVVEGKPELKKDLTACAKSKCHP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME C3
publication title Spectroscopic investigation and determination of reactivity and structure of the tetraheme cytochrome c3 from Desulfovibrio desulfuricans Essex 6.
pubmed doi rcsb
total genus 20
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 2001-03-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 1i77A00
3H4NA 19HCA 2Z47A 1A2IA 1MDVA 3OV0A 2CYMA 1EHJA 3BXUA 1I77A 2YYXA 2YXCA 1F22A 1OFYA 1DUWA 1J0PA 1QN1A 1H29A 1OFWA 1J0OA 3SJ0X 1AQEA 2A3PA 1UPDA 4HB6A 2LDOA 2N91A 2KSUA 3CAOA 3CYRA 1NEWA 2MZ9A 1RWJA 2BQ4A 1LM2A 3SJ4X 3H34A 1L3OA 4HAJA 3OUQA 1GWSA 1WADA 1OS6A 4HB8A 1QN0A 1Z1NX 3CARA 1GYOA 2LZZA 3SELX 2EWUA 2CVCA 4HDLA 2KMYA 2CTHA 1UP9A 2CY3A 1GM4A 1W7OA 1CZJA 1WR5A 2CDVA 4HBFA 1GMBA 2YYWA 1IT1A 1HH5A 2EWKA 3SJ1X 2FFNA 2BPNA 1KWJA 2EWIA 3OUEA 2A3MA 3H33A 2E84A 4HC3A
chains in the Genus database with same CATH superfamily
3H4NA 19HCA 2Z47A 1A2IA 1MDVA 3OV0A 2CYMA 1EHJA 3BXUA 1I77A 2YYXA 2YXCA 1F22A 1OFYA 1DUWA 1J0PA 1QN1A 1H29A 1OFWA 1J0OA 3SJ0X 1AQEA 2A3PA 1UPDA 4HB6A 2LDOA 2N91A 2KSUA 3CAOA 3CYRA 1NEWA 2MZ9A 1RWJA 2BQ4A 1LM2A 3SJ4X 3H34A 1L3OA 4HAJA 3OUQA 1GWSA 1WADA 1OS6A 4HB8A 1QN0A 1Z1NX 3CARA 1GYOA 2LZZA 3SELX 2EWUA 2CVCA 4HDLA 2KMYA 2CTHA 1UP9A 2CY3A 1GM4A 1W7OA 1CZJA 1WR5A 2CDVA 4HBFA 1GMBA 2YYWA 1IT1A 1HH5A 2EWKA 3SJ1X 2FFNA 2BPNA 1KWJA 2EWIA 3OUEA 2A3MA 3H33A 2E84A 4HC3A
chains in the Genus database with same CATH topology
3H4NA 19HCA 2Z47A 1A2IA 1MDVA 3OV0A 2CYMA 1EHJA 3BXUA 1I77A 2YYXA 2YXCA 1F22A 1OFYA 1DUWA 1J0PA 1QN1A 1H29A 1OFWA 1J0OA 3SJ0X 1AQEA 2A3PA 1UPDA 4HB6A 2LDOA 2N91A 2KSUA 3CAOA 3CYRA 1NEWA 2MZ9A 1RWJA 2BQ4A 1LM2A 3SJ4X 3H34A 1L3OA 4HAJA 3OUQA 1GWSA 1WADA 1OS6A 4HB8A 1QN0A 1Z1NX 3CARA 1GYOA 2LZZA 3SELX 2EWUA 2CVCA 4HDLA 2KMYA 2CTHA 1UP9A 2CY3A 1GM4A 1W7OA 1CZJA 1WR5A 2CDVA 4HBFA 1GMBA 2YYWA 1IT1A 1HH5A 2EWKA 3SJ1X 2FFNA 2BPNA 1KWJA 2EWIA 3OUEA 2A3MA 3H33A 2E84A 4HC3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H4N A;  19HC A;  2Z47 A;  1A2I A;  1MDV A;  3OV0 A;  2CYM A;  1EHJ A;  3BXU A;  1I77 A;  2YYX A;  2YXC A;  1F22 A;  1OFY A;  1DUW A;  1J0P A;  1QN1 A;  1H29 A;  1OFW A;  1J0O A;  3SJ0 X;  1AQE A;  2A3P A;  1UPD A;  4HB6 A;  2LDO A;  2N91 A;  2KSU A;  3CAO A;  3CYR A;  1NEW A;  2MZ9 A;  1RWJ A;  2BQ4 A;  1LM2 A;  3SJ4 X;  3H34 A;  1L3O A;  4HAJ A;  3OUQ A;  1GWS A;  1WAD A;  1OS6 A;  4HB8 A;  1QN0 A;  1Z1N X;  3CAR A;  1GYO A;  2LZZ A;  3SEL X;  2EWU A;  2CVC A;  4HDL A;  2KMY A;  2CTH A;  1UP9 A;  2CY3 A;  1GM4 A;  1W7O A;  1CZJ A;  1WR5 A;  2CDV A;  4HBF A;  1GMB A;  2YYW A;  1IT1 A;  1HH5 A;  2EWK A;  3SJ1 X;  2FFN A;  2BPN A;  1KWJ A;  2EWI A;  3OUE A;  2A3M A;  3H33 A;  2E84 A;  4HC3 A; 
#chains in the Genus database with same CATH topology
 3H4N A;  19HC A;  2Z47 A;  1A2I A;  1MDV A;  3OV0 A;  2CYM A;  1EHJ A;  3BXU A;  1I77 A;  2YYX A;  2YXC A;  1F22 A;  1OFY A;  1DUW A;  1J0P A;  1QN1 A;  1H29 A;  1OFW A;  1J0O A;  3SJ0 X;  1AQE A;  2A3P A;  1UPD A;  4HB6 A;  2LDO A;  2N91 A;  2KSU A;  3CAO A;  3CYR A;  1NEW A;  2MZ9 A;  1RWJ A;  2BQ4 A;  1LM2 A;  3SJ4 X;  3H34 A;  1L3O A;  4HAJ A;  3OUQ A;  1GWS A;  1WAD A;  1OS6 A;  4HB8 A;  1QN0 A;  1Z1N X;  3CAR A;  1GYO A;  2LZZ A;  3SEL X;  2EWU A;  2CVC A;  4HDL A;  2KMY A;  2CTH A;  1UP9 A;  2CY3 A;  1GM4 A;  1W7O A;  1CZJ A;  1WR5 A;  2CDV A;  4HBF A;  1GMB A;  2YYW A;  1IT1 A;  1HH5 A;  2EWK A;  3SJ1 X;  2FFN A;  2BPN A;  1KWJ A;  2EWI A;  3OUE A;  2A3M A;  3H33 A;  2E84 A;  4HC3 A; 
#chains in the Genus database with same CATH homology
 3H4N A;  19HC A;  2Z47 A;  1A2I A;  1MDV A;  3OV0 A;  2CYM A;  1EHJ A;  3BXU A;  1I77 A;  2YYX A;  2YXC A;  1F22 A;  1OFY A;  1DUW A;  1J0P A;  1QN1 A;  1H29 A;  1OFW A;  1J0O A;  3SJ0 X;  1AQE A;  2A3P A;  1UPD A;  4HB6 A;  2LDO A;  2N91 A;  2KSU A;  3CAO A;  3CYR A;  1NEW A;  2MZ9 A;  1RWJ A;  2BQ4 A;  1LM2 A;  3SJ4 X;  3H34 A;  1L3O A;  4HAJ A;  3OUQ A;  1GWS A;  1WAD A;  1OS6 A;  4HB8 A;  1QN0 A;  1Z1N X;  3CAR A;  1GYO A;  2LZZ A;  3SEL X;  2EWU A;  2CVC A;  4HDL A;  2KMY A;  2CTH A;  1UP9 A;  2CY3 A;  1GM4 A;  1W7O A;  1CZJ A;  1WR5 A;  2CDV A;  4HBF A;  1GMB A;  2YYW A;  1IT1 A;  1HH5 A;  2EWK A;  3SJ1 X;  2FFN A;  2BPN A;  1KWJ A;  2EWI A;  3OUE A;  2A3M A;  3H33 A;  2E84 A;  4HC3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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