1I79A

Human s-adenosylmethionine decarboxylase with covalently bound pyruvoyl group and covalently bound 5'-deoxy-5'-[(3-hydrazinopropyl)methylamino]adenosine
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
260
structure length
251
Chain Sequence
SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGRMNSDCWYLYTLDFPESQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRPQKIEGFKRLDCQSAMFNDYNFVFTSFAKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN
publication title The structural basis for substrate specificity and inhibition of human S-adenosylmethionine decarboxylase.
pubmed doi rcsb
source organism Homo sapiens
total genus 65
structure length 251
sequence length 260
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2001-03-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.90.10 Alpha Beta 4-Layer Sandwich S-adenosylmethionine decarboxylase S-adenosylmethionine decarboxylase 1i79A00
3EP8A 1I72A 1I79A 5TVOA 3EPBA 1JENA 3DZ5A 1I7MA 1I7CA 3EPAA 3EP9A 1VR7A 3EP7A 1TMIA 3EP3A 2IIIA 3DZ6A 1MSVA 1I7BA 3H0VA 3DZ2A 1JL0A 3DZ4A 3EP4A 3EP6A 3DZ3A 3EP5A 1MHMA 3DZ7A 1TLUA 3H0WA
chains in the Genus database with same CATH superfamily
3EP8A 1I72A 1I79A 5TVOA 3EPBA 1JENA 3DZ5A 1I7MA 1I7CA 3EPAA 3EP9A 1VR7A 3EP7A 1TMIA 3EP3A 2IIIA 3DZ6A 1MSVA 1I7BA 3H0VA 3DZ2A 1JL0A 3DZ4A 3EP4A 3EP6A 3DZ3A 3EP5A 1MHMA 3DZ7A 1TLUA 3H0WA
chains in the Genus database with same CATH topology
3EP4B 3DZ3B 3EP8A 3EP6B 3EP5B 1I72A 1MHMB 3DZ7B 1I79A 5TVOA 3EPBA 1JENA 3DZ5A 3H0WB 1I7MA 1I7CA 3EPAA 3EP9A 1VR7A 3EP8B 3EP7A 1TMIA 1I72B 3EP3A 2IIIA 3DZ6A 1MSVA 1I79B 5TVOB 3EPBB 1JENB 1I7BA 3H0VA 1I7MB 3DZ5B 3EP9B 3DZ2A 1JL0A 1I7CB 3EPAB 3DZ4A 3EP4A 3EP7B 3EP6A 3EP3B 3DZ3A 3EP5A 1MHMA 3DZ7A 3DZ6B 1I7BB 1TLUA 3H0VB 3DZ2B 3DZ4B 3H0WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EP8 A;  1I72 A;  1I79 A;  5TVO A;  3EPB A;  1JEN A;  3DZ5 A;  1I7M A;  1I7C A;  3EPA A;  3EP9 A;  1VR7 A;  3EP7 A;  1TMI A;  3EP3 A;  2III A;  3DZ6 A;  1MSV A;  1I7B A;  3H0V A;  3DZ2 A;  1JL0 A;  3DZ4 A;  3EP4 A;  3EP6 A;  3DZ3 A;  3EP5 A;  1MHM A;  3DZ7 A;  1TLU A;  3H0W A; 
#chains in the Genus database with same CATH topology
 3EP8 A;  1I72 A;  1I79 A;  5TVO A;  3EPB A;  1JEN A;  3DZ5 A;  1I7M A;  1I7C A;  3EPA A;  3EP9 A;  1VR7 A;  3EP7 A;  1TMI A;  3EP3 A;  2III A;  3DZ6 A;  1MSV A;  1I7B A;  3H0V A;  3DZ2 A;  1JL0 A;  3DZ4 A;  3EP4 A;  3EP6 A;  3DZ3 A;  3EP5 A;  1MHM A;  3DZ7 A;  1TLU A;  3H0W A; 
#chains in the Genus database with same CATH homology
 3EP4 B;  3DZ3 B;  3EP8 A;  3EP6 B;  3EP5 B;  1I72 A;  1MHM B;  3DZ7 B;  1I79 A;  5TVO A;  3EPB A;  1JEN A;  3DZ5 A;  3H0W B;  1I7M A;  1I7C A;  3EPA A;  3EP9 A;  1VR7 A;  3EP8 B;  3EP7 A;  1TMI A;  1I72 B;  3EP3 A;  2III A;  3DZ6 A;  1MSV A;  1I79 B;  5TVO B;  3EPB B;  1JEN B;  1I7B A;  3H0V A;  1I7M B;  3DZ5 B;  3EP9 B;  3DZ2 A;  1JL0 A;  1I7C B;  3EPA B;  3DZ4 A;  3EP4 A;  3EP7 B;  3EP6 A;  3EP3 B;  3DZ3 A;  3EP5 A;  1MHM A;  3DZ7 A;  3DZ6 B;  1I7B B;  1TLU A;  3H0V B;  3DZ2 B;  3DZ4 B;  3H0W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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