1I87A

Solution structure of the water-soluble fragment of rat hepatic apocytochrome b5
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
94
structure length
94
Chain Sequence
DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIAKPSETL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and dynamic perturbations induced by heme binding in cytochrome b5.
pubmed doi rcsb
molecule tags Electron transport
source organism Rattus norvegicus
molecule keywords CYTOCHROME B5
total genus 6
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2001-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1i87A00
2OZ0A 1IEUA 1BFXA 1B5AA 3X33A 3X35A 1B5MA 1AXXA 1I87A 4B8NA 3LF5A 3OZZB 2IBJA 1M59A 3X32A 4X8YA 3X34A 3KS0A 1CYOA 1EHBA 1F04A 1HKOA 1I5UA 4HILA 2I96A 1IB7A 1I8CA 1JEXA 1BLVA 1LJ0A 2M33A 1M2IA 1SH4A 1U9MA 1MNYA 1EUEA 1F03A 1NX7A 1KBIA 2I89A 2KEOA 3NERA 1ICCA 1ES1A 1LCOA 1J0QA 1J03A 1MJ4A 1U9UA 1AW3A 1B5BA 1LDCA 1SOXA 1T0GA 1AWPA 3MUSA 4HINA 1DO9A 1CXYA 1AQAA 1IETA 1LTDA 1X3XA 1LR6A 1M2MA 1LQXA 2AXXA 1FCBA 1M20A
chains in the Genus database with same CATH superfamily
2OZ0A 1IEUA 1BFXA 1B5AA 3X33A 3X35A 1B5MA 1AXXA 1I87A 4B8NA 3LF5A 3OZZB 2IBJA 1M59A 3X32A 4X8YA 3X34A 3KS0A 1CYOA 1EHBA 1F04A 1HKOA 1I5UA 4HILA 2I96A 1IB7A 1I8CA 1JEXA 1BLVA 1LJ0A 2M33A 1M2IA 1SH4A 1U9MA 1MNYA 1EUEA 1F03A 1NX7A 1KBIA 2I89A 2KEOA 3NERA 1ICCA 1ES1A 1LCOA 1J0QA 1J03A 1MJ4A 1U9UA 1AW3A 1B5BA 1LDCA 1SOXA 1T0GA 1AWPA 3MUSA 4HINA 1DO9A 1CXYA 1AQAA 1IETA 1LTDA 1X3XA 1LR6A 1M2MA 1LQXA 2AXXA 1FCBA 1M20A
chains in the Genus database with same CATH topology
2OZ0A 1IEUA 1BFXA 1B5AA 3X33A 3X35A 1B5MA 1AXXA 1I87A 4B8NA 3LF5A 3OZZB 2IBJA 1M59A 3X32A 4X8YA 3X34A 3KS0A 1CYOA 1EHBA 1F04A 1HKOA 1I5UA 4HILA 2I96A 1IB7A 1I8CA 1JEXA 1BLVA 1LJ0A 2M33A 1M2IA 1SH4A 1U9MA 1MNYA 1EUEA 1F03A 1NX7A 1KBIA 2I89A 2KEOA 3NERA 1ICCA 1ES1A 1LCOA 1J0QA 1J03A 1MJ4A 1U9UA 1AW3A 1B5BA 1LDCA 1SOXA 1T0GA 1AWPA 3MUSA 4HINA 1DO9A 1CXYA 1AQAA 1IETA 1LTDA 1X3XA 1LR6A 1M2MA 1LQXA 2AXXA 1FCBA 1M20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZ0 A;  1IEU A;  1BFX A;  1B5A A;  3X33 A;  3X35 A;  1B5M A;  1AXX A;  1I87 A;  4B8N A;  3LF5 A;  3OZZ B;  2IBJ A;  1M59 A;  3X32 A;  4X8Y A;  3X34 A;  3KS0 A;  1CYO A;  1EHB A;  1F04 A;  1HKO A;  1I5U A;  4HIL A;  2I96 A;  1IB7 A;  1I8C A;  1JEX A;  1BLV A;  1LJ0 A;  2M33 A;  1M2I A;  1SH4 A;  1U9M A;  1MNY A;  1EUE A;  1F03 A;  1NX7 A;  1KBI A;  2I89 A;  2KEO A;  3NER A;  1ICC A;  1ES1 A;  1LCO A;  1J0Q A;  1J03 A;  1MJ4 A;  1U9U A;  1AW3 A;  1B5B A;  1LDC A;  1SOX A;  1T0G A;  1AWP A;  3MUS A;  4HIN A;  1DO9 A;  1CXY A;  1AQA A;  1IET A;  1LTD A;  1X3X A;  1LR6 A;  1M2M A;  1LQX A;  2AXX A;  1FCB A;  1M20 A; 
#chains in the Genus database with same CATH topology
 2OZ0 A;  1IEU A;  1BFX A;  1B5A A;  3X33 A;  3X35 A;  1B5M A;  1AXX A;  1I87 A;  4B8N A;  3LF5 A;  3OZZ B;  2IBJ A;  1M59 A;  3X32 A;  4X8Y A;  3X34 A;  3KS0 A;  1CYO A;  1EHB A;  1F04 A;  1HKO A;  1I5U A;  4HIL A;  2I96 A;  1IB7 A;  1I8C A;  1JEX A;  1BLV A;  1LJ0 A;  2M33 A;  1M2I A;  1SH4 A;  1U9M A;  1MNY A;  1EUE A;  1F03 A;  1NX7 A;  1KBI A;  2I89 A;  2KEO A;  3NER A;  1ICC A;  1ES1 A;  1LCO A;  1J0Q A;  1J03 A;  1MJ4 A;  1U9U A;  1AW3 A;  1B5B A;  1LDC A;  1SOX A;  1T0G A;  1AWP A;  3MUS A;  4HIN A;  1DO9 A;  1CXY A;  1AQA A;  1IET A;  1LTD A;  1X3X A;  1LR6 A;  1M2M A;  1LQX A;  2AXX A;  1FCB A;  1M20 A; 
#chains in the Genus database with same CATH homology
 2OZ0 A;  1IEU A;  1BFX A;  1B5A A;  3X33 A;  3X35 A;  1B5M A;  1AXX A;  1I87 A;  4B8N A;  3LF5 A;  3OZZ B;  2IBJ A;  1M59 A;  3X32 A;  4X8Y A;  3X34 A;  3KS0 A;  1CYO A;  1EHB A;  1F04 A;  1HKO A;  1I5U A;  4HIL A;  2I96 A;  1IB7 A;  1I8C A;  1JEX A;  1BLV A;  1LJ0 A;  2M33 A;  1M2I A;  1SH4 A;  1U9M A;  1MNY A;  1EUE A;  1F03 A;  1NX7 A;  1KBI A;  2I89 A;  2KEO A;  3NER A;  1ICC A;  1ES1 A;  1LCO A;  1J0Q A;  1J03 A;  1MJ4 A;  1U9U A;  1AW3 A;  1B5B A;  1LDC A;  1SOX A;  1T0G A;  1AWP A;  3MUS A;  4HIN A;  1DO9 A;  1CXY A;  1AQA A;  1IET A;  1LTD A;  1X3X A;  1LR6 A;  1M2M A;  1LQX A;  2AXX A;  1FCB A;  1M20 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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