1I87A

Solution structure of the water-soluble fragment of rat hepatic apocytochrome b5
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
94
structure length
94
Chain Sequence
DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIAKPSETL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME B5
publication title Structural and dynamic perturbations induced by heme binding in cytochrome b5.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 6
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2001-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1i87A00
1MJ4A 1I8CA 1CXYA 1NX7A 1ICCA 2I96A 1J0QA 4X8YA 1LJ0A 1DO9A 3OZZB 1X3XA 1KBIA 2I89A 1T0GA 3X32A 2AXXA 1IB7A 1CYOA 1F03A 1LCOA 3NERA 1FCBA 1M2MA 1LTDA 1EUEA 1M20A 1IETA 1AQAA 1B5BA 1B5MA 1LQXA 1M59A 2KEOA 3X33A 1LR6A 3X34A 1HKOA 1F04A 1B5AA 1U9UA 1ES1A 3MUSA 1AWPA 2M33A 4B8NA 2IBJA 1JEXA 1U9MA 4HILA 1AXXA 1I87A 1I5UA 3KS0A 1BLVA 1LDCA 2OZ0A 3X35A 1BFXA 1AW3A 1J03A 1M2IA 1MNYA 3LF5A 1IEUA 1SOXA 1EHBA 1SH4A 4HINA
chains in the Genus database with same CATH superfamily
1MJ4A 1I8CA 1CXYA 1NX7A 1ICCA 2I96A 1J0QA 4X8YA 1LJ0A 1DO9A 3OZZB 1X3XA 1KBIA 2I89A 1T0GA 3X32A 2AXXA 1IB7A 1CYOA 1F03A 1LCOA 3NERA 1FCBA 1M2MA 1LTDA 1EUEA 1M20A 1IETA 1AQAA 1B5BA 1B5MA 1LQXA 1M59A 2KEOA 3X33A 1LR6A 3X34A 1HKOA 1F04A 1B5AA 1U9UA 1ES1A 3MUSA 1AWPA 2M33A 4B8NA 2IBJA 1JEXA 1U9MA 4HILA 1AXXA 1I87A 1I5UA 3KS0A 1BLVA 1LDCA 2OZ0A 3X35A 1BFXA 1AW3A 1J03A 1M2IA 1MNYA 3LF5A 1IEUA 1SOXA 1EHBA 1SH4A 4HINA
chains in the Genus database with same CATH topology
1MJ4A 1I8CA 1CXYA 1NX7A 1ICCA 2I96A 1J0QA 4X8YA 1LJ0A 1DO9A 3OZZB 1X3XA 1KBIA 2I89A 1T0GA 3X32A 2AXXA 1IB7A 1CYOA 1F03A 1LCOA 3NERA 1FCBA 1M2MA 1LTDA 1EUEA 1M20A 1IETA 1AQAA 1B5BA 1B5MA 1LQXA 1M59A 2KEOA 3X33A 1LR6A 3X34A 1HKOA 1F04A 1B5AA 1U9UA 1ES1A 3MUSA 1AWPA 2M33A 4B8NA 2IBJA 1JEXA 1U9MA 4HILA 1AXXA 1I87A 1I5UA 3KS0A 1BLVA 1LDCA 2OZ0A 3X35A 1BFXA 1AW3A 1J03A 1M2IA 1MNYA 3LF5A 1IEUA 1SOXA 1EHBA 1SH4A 4HINA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MJ4 A;  1I8C A;  1CXY A;  1NX7 A;  1ICC A;  2I96 A;  1J0Q A;  4X8Y A;  1LJ0 A;  1DO9 A;  3OZZ B;  1X3X A;  1KBI A;  2I89 A;  1T0G A;  3X32 A;  2AXX A;  1IB7 A;  1CYO A;  1F03 A;  1LCO A;  3NER A;  1FCB A;  1M2M A;  1LTD A;  1EUE A;  1M20 A;  1IET A;  1AQA A;  1B5B A;  1B5M A;  1LQX A;  1M59 A;  2KEO A;  3X33 A;  1LR6 A;  3X34 A;  1HKO A;  1F04 A;  1B5A A;  1U9U A;  1ES1 A;  3MUS A;  1AWP A;  2M33 A;  4B8N A;  2IBJ A;  1JEX A;  1U9M A;  4HIL A;  1AXX A;  1I87 A;  1I5U A;  3KS0 A;  1BLV A;  1LDC A;  2OZ0 A;  3X35 A;  1BFX A;  1AW3 A;  1J03 A;  1M2I A;  1MNY A;  3LF5 A;  1IEU A;  1SOX A;  1EHB A;  1SH4 A;  4HIN A; 
#chains in the Genus database with same CATH topology
 1MJ4 A;  1I8C A;  1CXY A;  1NX7 A;  1ICC A;  2I96 A;  1J0Q A;  4X8Y A;  1LJ0 A;  1DO9 A;  3OZZ B;  1X3X A;  1KBI A;  2I89 A;  1T0G A;  3X32 A;  2AXX A;  1IB7 A;  1CYO A;  1F03 A;  1LCO A;  3NER A;  1FCB A;  1M2M A;  1LTD A;  1EUE A;  1M20 A;  1IET A;  1AQA A;  1B5B A;  1B5M A;  1LQX A;  1M59 A;  2KEO A;  3X33 A;  1LR6 A;  3X34 A;  1HKO A;  1F04 A;  1B5A A;  1U9U A;  1ES1 A;  3MUS A;  1AWP A;  2M33 A;  4B8N A;  2IBJ A;  1JEX A;  1U9M A;  4HIL A;  1AXX A;  1I87 A;  1I5U A;  3KS0 A;  1BLV A;  1LDC A;  2OZ0 A;  3X35 A;  1BFX A;  1AW3 A;  1J03 A;  1M2I A;  1MNY A;  3LF5 A;  1IEU A;  1SOX A;  1EHB A;  1SH4 A;  4HIN A; 
#chains in the Genus database with same CATH homology
 1MJ4 A;  1I8C A;  1CXY A;  1NX7 A;  1ICC A;  2I96 A;  1J0Q A;  4X8Y A;  1LJ0 A;  1DO9 A;  3OZZ B;  1X3X A;  1KBI A;  2I89 A;  1T0G A;  3X32 A;  2AXX A;  1IB7 A;  1CYO A;  1F03 A;  1LCO A;  3NER A;  1FCB A;  1M2M A;  1LTD A;  1EUE A;  1M20 A;  1IET A;  1AQA A;  1B5B A;  1B5M A;  1LQX A;  1M59 A;  2KEO A;  3X33 A;  1LR6 A;  3X34 A;  1HKO A;  1F04 A;  1B5A A;  1U9U A;  1ES1 A;  3MUS A;  1AWP A;  2M33 A;  4B8N A;  2IBJ A;  1JEX A;  1U9M A;  4HIL A;  1AXX A;  1I87 A;  1I5U A;  3KS0 A;  1BLV A;  1LDC A;  2OZ0 A;  3X35 A;  1BFX A;  1AW3 A;  1J03 A;  1M2I A;  1MNY A;  3LF5 A;  1IEU A;  1SOX A;  1EHB A;  1SH4 A;  4HIN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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