1I8NA

Crystal structure of leech anti-platelet protein
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
89
structure length
89
Chain Sequence
b'ETITAGNEDCWSKRPGWKLPDNLLTKTEFTSVDECRKMCEESAVEPSCYILQINTETNECYRNNEGDVTWSSLQYDQPNVVQWHLHACS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ANTI-PLATELET PROTEIN
publication title The structure of leech anti-platelet protein, an inhibitor of haemostasis.
pubmed doi rcsb
source organism Haementeria officinalis
molecule tags Toxin
total genus 26
structure length 89
sequence length 89
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2001-03-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1i8nA00
2Q8AA 1W8KA 5CS9A 5EOKA 5CSQA 3ZLEA 4APLA 4Z0DA 4R19A 5CT2A 2J8LA 2YILA 1W81A 2K13X 4APMA 3SP8A 3HN4A 2Y8RA 2LL4M 1NK1A 4Z09A 2YIOA 1BHTA 3HMSA 3MKPA 5CS5A 2Q8BA 4DURA 2YIPA 2QJ2A 5CP9A 5CS1A 3SRJA 2QJ4A 2F83A 4UV6A 4A5TS 2LL3A 3HMRA 4R1AA 5CT3A 4R1BA 4UAOA 5CS3A 2X2ZA 1I8NA 5COEA 5EODA 3ZWZA 4IUAA 2Z8WA 4R1CA 2Z8VA 1GP9A 1GMNA 3SRIA 1YXEA 2HGFA 4Z0EA 4Z0FA 1HKYA 5I25A 3HMTA 5CT1A 1GMOA 1Z40A 2J8JA
chains in the Genus database with same CATH superfamily
2Q8AA 1W8KA 5CS9A 5EOKA 5CSQA 3ZLEA 2KL5A 4APLA 4Z0DA 4R19A 5CT2A 2J8LA 2YILA 1W81A 2K13X 4APMA 3SP8A 3HN4A 2Y8RA 2LL4M 1NK1A 4Z09A 2YIOA 1BHTA 3HMSA 3MKPA 5CS5A 2Q8BA 4DURA 2YIPA 2QJ2A 5CP9A 5CS1A 3SRJA 2QJ4A 2F83A 4UV6A 4A5TS 2LL3A 3HMRA 4R1AA 5CT3A 4R1BA 4UAOA 5CS3A 2X2ZA 1I8NA 5COEA 5EODA 3ZWZA 4IUAA 2Z8WA 4R1CA 2Z8VA 1GP9A 1GMNA 3SRIA 1YXEA 2HGFA 4Z0EA 4Z0FA 4YIZA 1HKYA 5I25A 3HMTA 5CT1A 1GMOA 1Z40A 4YIVA 2J8JA
chains in the Genus database with same CATH topology
2Q8AA 1W8KA 5CS9A 5EOKA 5CSQA 3ZLEA 2KL5A 4APLA 4Z0DA 4R19A 5CT2A 2J8LA 2YILA 1W81A 2K13X 4APMA 3SP8A 3HN4A 2Y8RA 2LL4M 1NK1A 4Z09A 2YIOA 1BHTA 3HMSA 3MKPA 5CS5A 2Q8BA 4DURA 2YIPA 2QJ2A 5CP9A 5CS1A 3SRJA 2QJ4A 2F83A 4UV6A 4A5TS 2LL3A 3HMRA 4R1AA 5CT3A 4R1BA 4UAOA 5CS3A 2X2ZA 1I8NA 5COEA 5EODA 3ZWZA 4IUAA 2Z8WA 4R1CA 2Z8VA 1GP9A 1GMNA 3SRIA 1YXEA 2HGFA 4Z0EA 4Z0FA 4YIZA 1HKYA 5I25A 3HMTA 5CT1A 1GMOA 1Z40A 4YIVA 2J8JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q8A A;  1W8K A;  5CS9 A;  5EOK A;  5CSQ A;  3ZLE A;  4APL A;  4Z0D A;  4R19 A;  5CT2 A;  2J8L A;  2YIL A;  1W81 A;  2K13 X;  4APM A;  3SP8 A;  3HN4 A;  2Y8R A;  2LL4 M;  1NK1 A;  4Z09 A;  2YIO A;  1BHT A;  3HMS A;  3MKP A;  5CS5 A;  2Q8B A;  4DUR A;  2YIP A;  2QJ2 A;  5CP9 A;  5CS1 A;  3SRJ A;  2QJ4 A;  2F83 A;  4UV6 A;  4A5T S;  2LL3 A;  3HMR A;  4R1A A;  5CT3 A;  4R1B A;  4UAO A;  5CS3 A;  2X2Z A;  1I8N A;  5COE A;  5EOD A;  3ZWZ A;  4IUA A;  2Z8W A;  4R1C A;  2Z8V A;  1GP9 A;  1GMN A;  3SRI A;  1YXE A;  2HGF A;  4Z0E A;  4Z0F A;  1HKY A;  5I25 A;  3HMT A;  5CT1 A;  1GMO A;  1Z40 A;  2J8J A; 
#chains in the Genus database with same CATH topology
 2Q8A A;  1W8K A;  5CS9 A;  5EOK A;  5CSQ A;  3ZLE A;  2KL5 A;  4APL A;  4Z0D A;  4R19 A;  5CT2 A;  2J8L A;  2YIL A;  1W81 A;  2K13 X;  4APM A;  3SP8 A;  3HN4 A;  2Y8R A;  2LL4 M;  1NK1 A;  4Z09 A;  2YIO A;  1BHT A;  3HMS A;  3MKP A;  5CS5 A;  2Q8B A;  4DUR A;  2YIP A;  2QJ2 A;  5CP9 A;  5CS1 A;  3SRJ A;  2QJ4 A;  2F83 A;  4UV6 A;  4A5T S;  2LL3 A;  3HMR A;  4R1A A;  5CT3 A;  4R1B A;  4UAO A;  5CS3 A;  2X2Z A;  1I8N A;  5COE A;  5EOD A;  3ZWZ A;  4IUA A;  2Z8W A;  4R1C A;  2Z8V A;  1GP9 A;  1GMN A;  3SRI A;  1YXE A;  2HGF A;  4Z0E A;  4Z0F A;  4YIZ A;  1HKY A;  5I25 A;  3HMT A;  5CT1 A;  1GMO A;  1Z40 A;  4YIV A;  2J8J A; 
#chains in the Genus database with same CATH homology
 2Q8A A;  1W8K A;  5CS9 A;  5EOK A;  5CSQ A;  3ZLE A;  2KL5 A;  4APL A;  4Z0D A;  4R19 A;  5CT2 A;  2J8L A;  2YIL A;  1W81 A;  2K13 X;  4APM A;  3SP8 A;  3HN4 A;  2Y8R A;  2LL4 M;  1NK1 A;  4Z09 A;  2YIO A;  1BHT A;  3HMS A;  3MKP A;  5CS5 A;  2Q8B A;  4DUR A;  2YIP A;  2QJ2 A;  5CP9 A;  5CS1 A;  3SRJ A;  2QJ4 A;  2F83 A;  4UV6 A;  4A5T S;  2LL3 A;  3HMR A;  4R1A A;  5CT3 A;  4R1B A;  4UAO A;  5CS3 A;  2X2Z A;  1I8N A;  5COE A;  5EOD A;  3ZWZ A;  4IUA A;  2Z8W A;  4R1C A;  2Z8V A;  1GP9 A;  1GMN A;  3SRI A;  1YXE A;  2HGF A;  4Z0E A;  4Z0F A;  4YIZ A;  1HKY A;  5I25 A;  3HMT A;  5CT1 A;  1GMO A;  1Z40 A;  4YIV A;  2J8J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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