1I94D

Crystal structures of the small ribosomal subunit with tetracycline, edeine and if3
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S RRNA
publication title Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.
pubmed doi rcsb
total genus 38
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2001-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 1i94D01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1i94D02
4JI7D 4DR7D 2UXDD 1FJGD 2UUCD 1KSLA 1H3FA 1JH3A 4K0KD 4AQYD 2KTLA 2ZM6D 4JI3D 2VQED 1HR0D 1VIOA 4JI0D 2K6PA 4NXND 2JANA 2UUAD 2ISTA 4X64D 4JV5D 1N34D 2UUBD 5LMUD 1N36D 1IBMD 4DV1D 1XNRD 4DR6D 2UXBD 1IBLD 1KSVA 1FKAD 4DR3D 1HNZD 4DV4D 2VQFD 4JI4D 1J5ED 1HNXD 4JI1D 4DV7D 4JI2D 4B3SD 4DR5D 4LGTA 4JYAD 4DV3D 1IBKD 4KHPD 1XNQD 4DV2D 4DUYD 2HHHD 4DV6D 1XMQD 1I94D 4LF5D 4OUDA 4B3TD 4DV0D 1N32D 1XMOD 2UXCD 4LF7D 4JI5D 3KBGA 3OTOD 5BR8D 4DR1D 4JI6D 3DH3A 4DR2D 2F4VD 4GKKD 1C06A 4X62D 1HNWD 1H3EA 3T1YD 4DUZD 1N33D 3T1HD 4LF9D 4B3MD 1KSKA 4LFAD 3HP7A 4LFBD 4LF4D 1P9KA 4LFCD 2UU9D 4NXMD 5LMND 4X65D 4DR4D 5IWAD 4OX9D 1C05A 4B3RD 4YY3D 4X66D 4LF6D 4DV5D 4LF8D 2E5LD 4JI8D 4YHHD 1DM9A 4GKJD
chains in the Genus database with same CATH superfamily
4JI7D 4DR7D 2UXDD 1FJGD 2UUCD 1KSLA 1H3FA 1JH3A 4K0KD 4AQYD 2KTLA 4II3A 2ZM6D 4JI3D 2VQED 1HR0D 1VIOA 3JAME 4II2A 4JI0D 2K6PA 3FN1A 1Y8XB 4NXND 2JANA 2UUAD 1Y8RB 2ISTA 4X64D 4JV5D 1N34D 2UUBD 5LMUD 1N36D 1IBMD 4DV1D 1XNRD 4DR6D 2UXBD 1IBLD 1KSVA 1FKAD 4DR3D 4NNJA 2L3NA 1HNZD 4DV4D 2VQFD 4JI4D 5FLXE 1J5ED 1HNXD 5LL6S 4JI1D 4DV7D 4JI2D 4B3SD 4DR5D 3J7AF 4LGTA 4JYAD 4DV3D 1IBKD 4KHPD 1Y8QB 1XNQD 4DV2D 4DUYD 5FQ2B 2HHHD 4DV6D 5IT9E 5A2QE 1XMQD 1I94D 4LF5D 2I1SA 4OUDA 4B3TD 5KNLA 4DV0D 1N32D 1XMOD 2UXCD 4LF7D 4JI5D 3KBGA 4W5VB 3OTOD 5BR8D 4DR1D 3J80E 2LQ7A 4JI6D 3DH3A 4DR2D 2F4VD 4GKKD 3ONGA 1C06A 2NVUB 4X62D 3KYDB 1HNWD 1H3EA 3T1YD 4DUZD 1N33D 3T1HD 3CMMA 4LF9D 4B3MD 1KSKA 4LFAD 3HP7A 4LFBD 4LF4D 1P9KA 4LFCD 2UU9D 4NXMD 5LMND 4X65D 4DR4D 5IWAD 4OX9D 1C05A 3ONHA 4B3RD 4YY3D 4X66D 4LF6D 4DV5D 4LF8D 2E5LD 4JI8D 3KYCB 4YHHD 1DM9A 3J81E 4GKJD 2ZTBA
chains in the Genus database with same CATH topology
4JI7D 4DR7D 2UXDD 1FJGD 2UUCD 1KSLA 1H3FA 1JH3A 4K0KD 4AQYD 2KTLA 2ZM6D 4JI3D 2VQED 1HR0D 1VIOA 4JI0D 2K6PA 4NXND 2JANA 2UUAD 2ISTA 4X64D 4JV5D 1N34D 2UUBD 5LMUD 1N36D 1IBMD 4DV1D 1XNRD 4DR6D 2UXBD 1IBLD 1KSVA 1FKAD 4DR3D 2L3NA 1HNZD 4DV4D 2VQFD 4JI4D 1J5ED 1HNXD 4JI1D 4DV7D 4JI2D 4B3SD 4DR5D 4LGTA 4JYAD 4DV3D 1IBKD 4KHPD 1XNQD 4DV2D 4DUYD 2HHHD 4DV6D 1XMQD 1I94D 4LF5D 4OUDA 4B3TD 4DV0D 1N32D 1XMOD 2UXCD 4LF7D 4JI5D 3KBGA 3OTOD 5BR8D 4DR1D 4JI6D 3DH3A 4DR2D 2F4VD 4GKKD 1C06A 4X62D 1HNWD 1H3EA 3T1YD 4DUZD 1N33D 3T1HD 4LF9D 4B3MD 1KSKA 4LFAD 3HP7A 4LFBD 4LF4D 1P9KA 4LFCD 2UU9D 4NXMD 5LMND 4X65D 4DR4D 5IWAD 4OX9D 1C05A 4B3RD 4YY3D 4X66D 4LF6D 4DV5D 4LF8D 2E5LD 4JI8D 4YHHD 1DM9A 4GKJD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JI7 D;  4DR7 D;  2UXD D;  1FJG D;  2UUC D;  1KSL A;  1H3F A;  1JH3 A;  4K0K D;  4AQY D;  2KTL A;  2ZM6 D;  4JI3 D;  2VQE D;  1HR0 D;  1VIO A;  4JI0 D;  2K6P A;  4NXN D;  2JAN A;  2UUA D;  2IST A;  4X64 D;  4JV5 D;  1N34 D;  2UUB D;  5LMU D;  1N36 D;  1IBM D;  4DV1 D;  1XNR D;  4DR6 D;  2UXB D;  1IBL D;  1KSV A;  1FKA D;  4DR3 D;  1HNZ D;  4DV4 D;  2VQF D;  4JI4 D;  1J5E D;  1HNX D;  4JI1 D;  4DV7 D;  4JI2 D;  4B3S D;  4DR5 D;  4LGT A;  4JYA D;  4DV3 D;  1IBK D;  4KHP D;  1XNQ D;  4DV2 D;  4DUY D;  2HHH D;  4DV6 D;  1XMQ D;  1I94 D;  4LF5 D;  4OUD A;  4B3T D;  4DV0 D;  1N32 D;  1XMO D;  2UXC D;  4LF7 D;  4JI5 D;  3KBG A;  3OTO D;  5BR8 D;  4DR1 D;  4JI6 D;  3DH3 A;  4DR2 D;  2F4V D;  4GKK D;  1C06 A;  4X62 D;  1HNW D;  1H3E A;  3T1Y D;  4DUZ D;  1N33 D;  3T1H D;  4LF9 D;  4B3M D;  1KSK A;  4LFA D;  3HP7 A;  4LFB D;  4LF4 D;  1P9K A;  4LFC D;  2UU9 D;  4NXM D;  5LMN D;  4X65 D;  4DR4 D;  5IWA D;  4OX9 D;  1C05 A;  4B3R D;  4YY3 D;  4X66 D;  4LF6 D;  4DV5 D;  4LF8 D;  2E5L D;  4JI8 D;  4YHH D;  1DM9 A;  4GKJ D; 
#chains in the Genus database with same CATH topology
 4JI7 D;  4DR7 D;  2UXD D;  1FJG D;  2UUC D;  1KSL A;  1H3F A;  1JH3 A;  4K0K D;  4AQY D;  2KTL A;  4II3 A;  2ZM6 D;  4JI3 D;  2VQE D;  1HR0 D;  1VIO A;  3JAM E;  4II2 A;  4JI0 D;  2K6P A;  3FN1 A;  1Y8X B;  4NXN D;  2JAN A;  2UUA D;  1Y8R B;  2IST A;  4X64 D;  4JV5 D;  1N34 D;  2UUB D;  5LMU D;  1N36 D;  1IBM D;  4DV1 D;  1XNR D;  4DR6 D;  2UXB D;  1IBL D;  1KSV A;  1FKA D;  4DR3 D;  4NNJ A;  2L3N A;  1HNZ D;  4DV4 D;  2VQF D;  4JI4 D;  5FLX E;  1J5E D;  1HNX D;  5LL6 S;  4JI1 D;  4DV7 D;  4JI2 D;  4B3S D;  4DR5 D;  3J7A F;  4LGT A;  4JYA D;  4DV3 D;  1IBK D;  4KHP D;  1Y8Q B;  1XNQ D;  4DV2 D;  4DUY D;  5FQ2 B;  2HHH D;  4DV6 D;  5IT9 E;  5A2Q E;  1XMQ D;  1I94 D;  4LF5 D;  2I1S A;  4OUD A;  4B3T D;  5KNL A;  4DV0 D;  1N32 D;  1XMO D;  2UXC D;  4LF7 D;  4JI5 D;  3KBG A;  4W5V B;  3OTO D;  5BR8 D;  4DR1 D;  3J80 E;  2LQ7 A;  4JI6 D;  3DH3 A;  4DR2 D;  2F4V D;  4GKK D;  3ONG A;  1C06 A;  2NVU B;  4X62 D;  3KYD B;  1HNW D;  1H3E A;  3T1Y D;  4DUZ D;  1N33 D;  3T1H D;  3CMM A;  4LF9 D;  4B3M D;  1KSK A;  4LFA D;  3HP7 A;  4LFB D;  4LF4 D;  1P9K A;  4LFC D;  2UU9 D;  4NXM D;  5LMN D;  4X65 D;  4DR4 D;  5IWA D;  4OX9 D;  1C05 A;  3ONH A;  4B3R D;  4YY3 D;  4X66 D;  4LF6 D;  4DV5 D;  4LF8 D;  2E5L D;  4JI8 D;  3KYC B;  4YHH D;  1DM9 A;  3J81 E;  4GKJ D;  2ZTB A; 
#chains in the Genus database with same CATH homology
 4JI7 D;  4DR7 D;  2UXD D;  1FJG D;  2UUC D;  1KSL A;  1H3F A;  1JH3 A;  4K0K D;  4AQY D;  2KTL A;  2ZM6 D;  4JI3 D;  2VQE D;  1HR0 D;  1VIO A;  4JI0 D;  2K6P A;  4NXN D;  2JAN A;  2UUA D;  2IST A;  4X64 D;  4JV5 D;  1N34 D;  2UUB D;  5LMU D;  1N36 D;  1IBM D;  4DV1 D;  1XNR D;  4DR6 D;  2UXB D;  1IBL D;  1KSV A;  1FKA D;  4DR3 D;  2L3N A;  1HNZ D;  4DV4 D;  2VQF D;  4JI4 D;  1J5E D;  1HNX D;  4JI1 D;  4DV7 D;  4JI2 D;  4B3S D;  4DR5 D;  4LGT A;  4JYA D;  4DV3 D;  1IBK D;  4KHP D;  1XNQ D;  4DV2 D;  4DUY D;  2HHH D;  4DV6 D;  1XMQ D;  1I94 D;  4LF5 D;  4OUD A;  4B3T D;  4DV0 D;  1N32 D;  1XMO D;  2UXC D;  4LF7 D;  4JI5 D;  3KBG A;  3OTO D;  5BR8 D;  4DR1 D;  4JI6 D;  3DH3 A;  4DR2 D;  2F4V D;  4GKK D;  1C06 A;  4X62 D;  1HNW D;  1H3E A;  3T1Y D;  4DUZ D;  1N33 D;  3T1H D;  4LF9 D;  4B3M D;  1KSK A;  4LFA D;  3HP7 A;  4LFB D;  4LF4 D;  1P9K A;  4LFC D;  2UU9 D;  4NXM D;  5LMN D;  4X65 D;  4DR4 D;  5IWA D;  4OX9 D;  1C05 A;  4B3R D;  4YY3 D;  4X66 D;  4LF6 D;  4DV5 D;  4LF8 D;  2E5L D;  4JI8 D;  4YHH D;  1DM9 A;  4GKJ D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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